Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35965 * 117.00046 * 2 1 4 4 C 1.37560 * 120.83065 * 180.02562 * 3 2 1 5 5 C 1.38031 * 114.25506 * 179.97438 * 4 3 2 6 6 C 1.47116 * 127.76401 * 179.97438 * 5 4 3 7 7 O 1.21630 * 119.99629 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00331 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00249 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.46676 * 325.00306 * 9 8 6 11 11 C 1.53000 * 109.46858 * 84.99666 * 9 8 6 12 12 C 1.52992 * 109.47190 * 205.00206 * 9 8 6 13 13 H 1.09006 * 109.50035 * 60.06139 * 12 9 8 14 14 C 1.53040 * 109.52580 * 180.14492 * 12 9 8 15 15 C 1.53039 * 109.54198 * 181.32921 * 14 12 9 16 16 C 1.53622 * 109.24473 * 298.51455 * 15 14 12 17 17 N 1.46924 * 108.54399 * 54.84806 * 16 15 14 18 18 C 1.36946 * 120.62919 * 126.37114 * 17 16 15 19 19 H 1.08001 * 119.99879 * 207.53220 * 18 17 16 20 20 C 1.38814 * 119.99719 * 27.52961 * 18 17 16 21 21 N 1.31620 * 119.99709 * 25.84717 * 20 18 17 22 22 Si 1.86797 * 119.99712 * 205.56717 * 20 18 17 23 23 H 1.48493 * 109.47196 * 60.00574 * 22 20 18 24 24 H 1.48500 * 109.46719 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47268 * 299.99796 * 22 20 18 26 26 C 1.46928 * 118.74378 * 306.10142 * 17 16 15 27 27 S 1.77239 * 104.47996 * 0.26105 * 5 4 3 28 28 N 1.30370 * 120.82156 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46652 * 299.99586 * 1 2 3 30 30 H 1.08994 * 109.47254 * 60.00005 * 1 2 3 31 31 H 1.09005 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08005 * 122.87404 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99869 * 0.02562 * 8 6 5 34 34 H 1.08999 * 109.46590 * 60.00835 * 11 9 8 35 35 H 1.09006 * 109.46656 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47590 * 300.00087 * 11 9 8 37 37 H 1.08999 * 109.46221 * 301.35296 * 14 12 9 38 38 H 1.09003 * 109.45556 * 61.30999 * 14 12 9 39 39 H 1.09004 * 109.49499 * 58.58593 * 15 14 12 40 40 H 1.08994 * 109.49949 * 178.64805 * 15 14 12 41 41 H 1.09007 * 109.73672 * 295.11836 * 16 15 14 42 42 H 1.08997 * 109.67035 * 174.54572 * 16 15 14 43 43 H 0.96992 * 120.00366 * 4.05609 * 21 20 18 44 44 H 1.08992 * 109.58848 * 173.64203 * 26 17 16 45 45 H 1.08997 * 109.58525 * 294.06878 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 -0.0010 6 6 5.3049 3.0353 -0.0011 7 8 6.1993 2.2110 -0.0012 8 7 5.6003 4.3503 -0.0011 9 6 6.9988 4.7869 -0.0018 10 1 7.5968 4.0914 0.5873 11 6 7.5223 4.8189 -1.4391 12 6 7.0963 6.1866 0.6080 13 1 6.7245 6.1640 1.6324 14 6 8.5564 6.6454 0.6046 15 6 8.6588 8.0318 1.2446 16 6 7.8359 9.0326 0.4192 17 7 6.4630 8.5231 0.3004 18 6 5.3961 9.3017 0.6621 19 1 4.4802 8.8396 0.9997 20 6 5.4919 10.6849 0.5947 21 7 6.3342 11.2460 -0.2469 22 14 4.4198 11.7499 1.6927 23 1 4.7068 11.4394 3.1162 24 1 4.7107 13.1821 1.4296 25 1 2.9891 11.4749 1.4047 26 6 6.2561 7.1645 -0.2195 27 16 2.4470 3.6111 0.0071 28 7 1.3520 2.3149 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0644 0.4374 -0.0006 33 1 4.8870 5.0077 -0.0007 34 1 6.9243 5.5144 -2.0280 35 1 8.5627 5.1442 -1.4396 36 1 7.4528 3.8217 -1.8735 37 1 9.1607 5.9379 1.1722 38 1 8.9200 6.6916 -0.4220 39 1 8.2722 7.9918 2.2630 40 1 9.7018 8.3476 1.2636 41 1 8.2735 9.1386 -0.5736 42 1 7.8245 10.0002 0.9210 43 1 6.8450 10.6958 -0.8609 44 1 5.2020 6.8991 -0.1391 45 1 6.5674 7.1213 -1.2631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025422791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = -31.926236 kcal Electronic energy + Delta-G solvation = -27292.216331 eV Core-core repulsion = 23436.674991 eV Total energy + Delta-G solvation = -3855.541340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50681 -41.03578 -39.65332 -37.61373 -36.88872 -34.90235 -33.07969 -32.21150 -32.02137 -29.61167 -28.99968 -27.04680 -26.47768 -24.99960 -23.98014 -22.99298 -21.83714 -21.21845 -20.16477 -19.83858 -19.30193 -18.81965 -17.47948 -17.36259 -17.22235 -16.39116 -16.28384 -16.05344 -15.80914 -15.53995 -15.42483 -15.28215 -14.96885 -14.54446 -14.50340 -14.36100 -13.90515 -13.69658 -13.56899 -13.03983 -12.90557 -12.73889 -12.61225 -12.56537 -12.18230 -12.11119 -12.01382 -11.91211 -11.88430 -11.72301 -11.61073 -11.46888 -11.26568 -11.05307 -10.97418 -10.39920 -10.28414 -9.56385 -8.85842 -8.22370 -5.34490 -1.08482 -0.03566 0.35186 1.01611 1.60263 1.62633 1.67050 1.81833 1.85370 2.21926 2.67527 3.24443 3.33925 3.48420 3.71001 3.85580 3.89228 3.96725 4.04688 4.26100 4.27462 4.32887 4.33819 4.36859 4.50282 4.55262 4.58894 4.69818 4.74654 4.76432 4.89606 4.92631 4.95579 5.05020 5.11883 5.18955 5.26114 5.29083 5.37553 5.40159 5.59793 5.88377 5.88760 6.20021 6.43736 6.82713 7.10602 7.82435 8.27552 9.04527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.002978 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.992213 B = 9401.457789 C =11201.081022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.301 3.699 4 C -0.123 4.123 5 C -0.191 4.191 6 C 0.599 3.401 7 O -0.544 6.544 8 N -0.706 5.706 9 C 0.158 3.842 10 H 0.094 0.906 11 C -0.162 4.162 12 C -0.100 4.100 13 H 0.066 0.934 14 C -0.097 4.097 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.616 5.616 18 C -0.353 4.353 19 H 0.053 0.947 20 C -0.075 4.075 21 N -0.943 5.943 22 Si 1.110 2.890 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.275 1.275 26 C 0.151 3.849 27 S 0.309 5.691 28 N -0.522 5.522 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.189 0.811 33 H 0.406 0.594 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.006 0.994 42 H 0.039 0.961 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -21.032 0.567 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.207 6.207 3 C 0.088 3.912 4 C -0.161 4.161 5 C -0.323 4.323 6 C 0.384 3.616 7 O -0.423 6.423 8 N -0.357 5.357 9 C 0.054 3.946 10 H 0.112 0.888 11 C -0.220 4.220 12 C -0.120 4.120 13 H 0.085 0.915 14 C -0.135 4.135 15 C -0.166 4.166 16 C 0.027 3.973 17 N -0.340 5.340 18 C -0.483 4.483 19 H 0.071 0.929 20 C -0.272 4.272 21 N -0.586 5.586 22 Si 0.935 3.065 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.025 3.975 27 S 0.458 5.542 28 N -0.365 5.365 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.206 0.794 33 H 0.242 0.758 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.265 -18.700 1.013 19.748 hybrid contribution 0.560 -2.211 -0.648 2.371 sum -5.705 -20.912 0.366 21.679 Atomic orbital electron populations 1.23255 0.75026 1.05674 1.02494 1.86319 1.24642 1.21753 1.87946 1.20005 0.89932 0.85636 0.95585 1.20895 0.92500 0.98666 1.04066 1.25891 0.99015 0.98365 1.09026 1.16719 0.85514 0.82895 0.76516 1.90821 1.47506 1.53122 1.50849 1.46082 1.10264 1.06006 1.73367 1.21032 0.80572 0.95023 0.97935 0.88818 1.22243 1.02517 1.01961 0.95301 1.21759 0.97890 0.92666 0.99726 0.91548 1.21436 0.94576 0.95960 1.01538 1.21998 0.99492 0.96104 0.99014 1.20940 0.84447 0.96196 0.95742 1.44324 1.01685 1.12984 1.75033 1.20199 0.95630 0.90787 1.41707 0.92916 1.27052 1.02864 0.96834 1.00411 1.70904 1.29950 1.38332 1.19373 0.82907 0.74596 0.74210 0.74761 1.20781 1.22130 1.20127 1.21106 0.97229 0.84381 0.94757 1.85238 0.89307 1.11142 1.68467 1.76429 1.27306 1.01538 1.31197 0.92216 0.92194 0.84910 0.79378 0.75777 0.92322 0.89830 0.92437 0.90052 0.91242 0.93183 0.90791 0.97612 0.94201 0.93506 0.93313 0.95655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.43 113.37 1.18 1.56 16 2 O -0.30 -5.58 10.51 -93.16 -0.98 -6.56 16 3 C 0.30 6.41 7.36 84.75 0.62 7.04 16 4 C -0.12 -2.57 10.09 22.06 0.22 -2.35 16 5 C -0.19 -4.30 6.74 24.55 0.17 -4.13 16 6 C 0.60 15.25 7.77 86.57 0.67 15.92 16 7 O -0.54 -16.44 16.61 -4.13 -0.07 -16.51 16 8 N -0.71 -17.22 4.99 -446.11 -2.23 -19.45 16 9 C 0.16 3.93 2.41 44.99 0.11 4.04 16 10 H 0.09 2.32 7.58 -2.38 -0.02 2.31 16 11 C -0.16 -3.80 8.79 71.98 0.63 -3.17 16 12 C -0.10 -2.92 2.33 -10.72 -0.02 -2.95 16 13 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 14 C -0.10 -2.70 4.77 30.62 0.15 -2.55 16 15 C -0.13 -4.33 6.10 30.82 0.19 -4.14 16 16 C 0.15 6.86 4.72 86.51 0.41 7.27 16 17 N -0.62 -29.09 2.85 -698.25 -1.99 -31.07 16 18 C -0.35 -18.97 9.49 84.03 0.80 -18.17 16 19 H 0.05 2.80 7.95 -2.91 -0.02 2.78 16 20 C -0.07 -4.17 4.66 84.86 0.40 -3.77 16 21 N -0.94 -56.48 12.46 21.65 0.27 -56.21 16 22 Si 1.11 49.99 29.99 68.60 2.06 52.05 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.15 5.56 5.29 86.36 0.46 6.02 16 27 S 0.31 6.64 23.27 -56.49 -1.31 5.32 16 28 N -0.52 -11.88 11.03 -175.20 -1.93 -13.82 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.41 9.58 6.33 -92.71 -0.59 8.99 16 34 H 0.06 1.46 6.32 -2.39 -0.02 1.45 16 35 H 0.08 1.77 6.46 -2.38 -0.02 1.75 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.85 6.50 -2.39 -0.02 1.83 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.01 0.27 7.87 -2.38 -0.02 0.25 16 42 H 0.04 2.08 6.31 -2.39 -0.02 2.06 16 43 H 0.25 15.49 6.69 -92.71 -0.62 14.87 16 44 H 0.05 1.76 6.52 -2.39 -0.02 1.75 16 45 H 0.03 0.95 6.18 -2.39 -0.01 0.93 16 Total: -1.00 -67.18 371.84 0.38 -66.81 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.58 Total: 18.82 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.97 Total: 0.62 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -5.88 Total: -120.55 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.05 Total: -23.07 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.06 Total: 52.05 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.31 Total: 5.32 kcal Total: -67.18 0.38 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025422791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.883 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds