Wall clock time and date at job start Sat Apr 11 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 116.99277 * 2 1 4 4 C 1.37565 * 120.82077 * 179.97438 * 3 2 1 5 5 C 1.38043 * 114.24871 * 179.97438 * 4 3 2 6 6 C 1.47112 * 127.76086 * 180.02562 * 5 4 3 7 7 O 1.21640 * 120.00056 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00079 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00021 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47693 * 325.00216 * 9 8 6 11 11 C 1.53002 * 109.47084 * 85.00416 * 9 8 6 12 12 C 1.53005 * 109.47266 * 204.99773 * 9 8 6 13 13 H 1.08996 * 109.52681 * 299.92336 * 12 9 8 14 14 C 1.53044 * 109.49829 * 179.83685 * 12 9 8 15 15 C 1.53068 * 109.65672 * 178.75101 * 14 12 9 16 16 C 1.53183 * 109.29754 * 61.15852 * 15 14 12 17 17 N 1.46932 * 108.89292 * 305.57515 * 16 15 14 18 18 C 1.36928 * 120.63263 * 233.55624 * 17 16 15 19 19 H 1.08006 * 120.00005 * 152.61244 * 18 17 16 20 20 C 1.38813 * 120.00031 * 332.61376 * 18 17 16 21 21 N 1.31624 * 119.99744 * 159.35055 * 20 18 17 22 22 Si 1.86794 * 120.00066 * 339.35175 * 20 18 17 23 23 H 1.48497 * 109.47178 * 92.90746 * 22 20 18 24 24 H 1.48508 * 109.47073 * 212.90280 * 22 20 18 25 25 H 1.48498 * 109.47289 * 332.90222 * 22 20 18 26 26 C 1.46933 * 118.73463 * 53.53642 * 17 16 15 27 27 S 1.77229 * 104.47766 * 0.26166 * 5 4 3 28 28 N 1.30360 * 120.82831 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47127 * 299.99448 * 1 2 3 30 30 H 1.09000 * 109.47985 * 59.99927 * 1 2 3 31 31 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 32 32 H 1.08006 * 122.87722 * 359.97438 * 4 3 2 33 33 H 0.96996 * 120.00454 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.46949 * 299.99919 * 11 9 8 35 35 H 1.08999 * 109.47479 * 59.99584 * 11 9 8 36 36 H 1.08998 * 109.47631 * 180.02562 * 11 9 8 37 37 H 1.09003 * 109.46379 * 298.71255 * 14 12 9 38 38 H 1.08998 * 109.45459 * 58.67878 * 14 12 9 39 39 H 1.08994 * 109.39123 * 301.27654 * 15 14 12 40 40 H 1.09008 * 109.62179 * 181.17269 * 15 14 12 41 41 H 1.09001 * 109.59178 * 185.71612 * 16 15 14 42 42 H 1.09010 * 109.58838 * 65.43147 * 16 15 14 43 43 H 0.97000 * 119.99778 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.58657 * 66.18173 * 26 17 16 45 45 H 1.08996 * 109.58153 * 186.46277 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2116 0.0000 4 6 3.4187 1.3034 0.0005 5 6 3.9004 2.5971 -0.0001 6 6 5.3046 3.0356 -0.0003 7 8 6.1992 2.2113 0.0006 8 7 5.6000 4.3505 -0.0015 9 6 6.9984 4.7871 -0.0011 10 1 7.5959 4.0925 0.5893 11 6 7.5235 4.8177 -1.4379 12 6 7.0953 6.1877 0.6071 13 1 6.4994 6.8834 0.0165 14 6 8.5565 6.6428 0.6115 15 6 8.6539 8.0563 1.1907 16 6 8.1426 8.0480 2.6347 17 7 6.7895 7.4757 2.6570 18 6 5.7529 8.1578 3.2360 19 1 4.7414 7.9948 2.8942 20 6 6.0021 9.0587 4.2623 21 7 5.1209 9.9946 4.5448 22 14 7.5881 8.9427 5.2423 23 1 8.6122 9.8291 4.6334 24 1 7.3365 9.3665 6.6432 25 1 8.0765 7.5404 5.2295 26 6 6.5698 6.1577 2.0457 27 16 2.4468 3.6111 0.0065 28 7 1.3519 2.3150 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0643 0.4375 0.0014 33 1 4.8868 5.0078 -0.0026 34 1 7.4545 3.8199 -1.8713 35 1 6.9262 5.5124 -2.0284 36 1 8.5641 5.1421 -1.4377 37 1 9.1476 5.9606 1.2226 38 1 8.9402 6.6415 -0.4087 39 1 8.0453 8.7350 0.5932 40 1 9.6922 8.3879 1.1744 41 1 8.1143 9.0679 3.0183 42 1 8.8054 7.4431 3.2536 43 1 5.2948 10.6239 5.2622 44 1 7.1049 5.3973 2.6146 45 1 5.5040 5.9295 2.0429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025422793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:16 Heat of formation + Delta-G solvation = -4.911956 kcal Electronic energy + Delta-G solvation = -27310.858302 eV Core-core repulsion = 23456.488389 eV Total energy + Delta-G solvation = -3854.369913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.54405 -39.97580 -38.26125 -36.72101 -35.52357 -33.20543 -31.95929 -31.11633 -30.70655 -29.05339 -28.30664 -25.65438 -25.06048 -23.74333 -22.23837 -21.75021 -20.71495 -20.29582 -19.48281 -18.76239 -17.96634 -16.90068 -16.54214 -16.38856 -16.19552 -15.45020 -15.19562 -15.00179 -14.44765 -14.33425 -13.93075 -13.72056 -13.66976 -13.63319 -13.25215 -13.00897 -12.74566 -12.42600 -12.35844 -12.12997 -11.79207 -11.68716 -11.44307 -11.40794 -11.35672 -11.10655 -10.82455 -10.62042 -10.46499 -10.32190 -10.14192 -10.00782 -9.88751 -9.67920 -9.46390 -9.20627 -8.67172 -8.62215 -7.00072 -5.97467 -3.33351 -0.13057 0.89163 1.26047 1.94671 2.56613 2.86620 3.10119 3.30526 3.47589 3.50584 4.29364 4.51174 4.60685 4.72339 4.81679 4.91718 4.95292 5.05953 5.09762 5.18529 5.21631 5.33917 5.38871 5.40994 5.52790 5.56742 5.78366 5.80652 5.83465 5.92706 6.02761 6.05609 6.20335 6.25598 6.32967 6.36620 6.53332 6.56640 6.66367 6.69170 6.69251 6.93764 7.25856 7.90138 7.93041 8.29520 8.91126 9.69637 10.07419 11.18386 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003004 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.142256 B = 9317.565280 C =10720.532435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.303 3.697 4 C -0.130 4.130 5 C -0.182 4.182 6 C 0.595 3.405 7 O -0.518 6.518 8 N -0.707 5.707 9 C 0.148 3.852 10 H 0.092 0.908 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.102 4.102 15 C -0.134 4.134 16 C 0.123 3.877 17 N -0.605 5.605 18 C -0.261 4.261 19 H 0.085 0.915 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.156 3.844 27 S 0.302 5.698 28 N -0.510 5.510 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.403 0.597 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.023 0.977 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 -15.594 -13.216 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.090 3.910 4 C -0.168 4.168 5 C -0.314 4.314 6 C 0.379 3.621 7 O -0.395 6.395 8 N -0.358 5.358 9 C 0.044 3.956 10 H 0.110 0.890 11 C -0.221 4.221 12 C -0.135 4.135 13 H 0.097 0.903 14 C -0.140 4.140 15 C -0.173 4.173 16 C -0.002 4.002 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.030 3.970 27 S 0.452 5.548 28 N -0.352 5.352 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.195 0.805 33 H 0.238 0.762 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.465 -14.696 -13.076 19.974 hybrid contribution 1.122 -0.987 0.696 1.648 sum -2.344 -15.684 -12.380 20.118 Atomic orbital electron populations 1.22997 0.76602 1.03659 1.02692 1.86311 1.23082 1.22477 1.88249 1.19906 0.89792 0.85314 0.95987 1.20739 0.92322 0.98564 1.05166 1.26060 0.99561 0.97850 1.07902 1.16621 0.85201 0.83144 0.77180 1.90843 1.46648 1.52586 1.49388 1.45975 1.10050 1.05956 1.73815 1.21159 0.80418 0.96920 0.97056 0.89000 1.22221 1.01801 1.02100 0.96026 1.21996 0.98323 0.93690 0.99499 0.90283 1.21451 0.94969 0.97371 1.00206 1.21999 0.99949 0.96311 0.99079 1.21355 0.86601 0.98307 0.93968 1.44325 1.05501 1.16224 1.66753 1.18893 0.88518 1.18853 1.12617 0.89709 1.25265 0.97086 0.97428 0.97721 1.69836 1.36561 1.16574 1.32093 0.86954 0.84010 0.78273 0.79394 1.21641 1.23226 1.19596 1.20908 0.98829 0.87489 0.89815 1.85206 0.89708 1.11507 1.68392 1.76438 1.26872 1.01148 1.30765 0.91971 0.92081 0.87962 0.80520 0.76224 0.92375 0.92320 0.90950 0.92346 0.92354 0.91710 0.92651 0.91040 0.95819 0.92769 0.95932 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.32 16 2 O -0.30 -3.04 10.52 -19.66 -0.21 -3.24 16 3 C 0.30 3.46 7.36 -18.42 -0.14 3.32 16 4 C -0.13 -1.45 10.09 -39.90 -0.40 -1.86 16 5 C -0.18 -2.12 6.74 -36.05 -0.24 -2.36 16 6 C 0.60 7.76 7.77 -12.66 -0.10 7.66 16 7 O -0.52 -8.12 16.61 5.24 0.09 -8.03 16 8 N -0.71 -8.47 4.47 -54.98 -0.25 -8.72 16 9 C 0.15 1.84 2.16 -67.93 -0.15 1.70 16 10 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 11 C -0.16 -1.74 9.14 37.16 0.34 -1.40 16 12 C -0.11 -1.64 1.98 -90.50 -0.18 -1.82 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.10 -1.42 4.85 -26.67 -0.13 -1.55 16 15 C -0.13 -2.21 6.09 -26.60 -0.16 -2.37 16 16 C 0.12 2.59 4.20 -3.71 -0.02 2.58 16 17 N -0.60 -13.75 2.77 -172.31 -0.48 -14.23 16 18 C -0.26 -7.05 10.03 -15.06 -0.15 -7.20 16 19 H 0.09 2.43 8.06 -52.48 -0.42 2.00 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.40 13.97 55.49 0.78 -26.62 16 22 Si 0.88 22.20 24.34 -169.99 -4.14 18.06 16 23 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.27 -6.73 6.64 56.52 0.38 -6.36 16 26 C 0.16 2.87 5.55 -3.71 -0.02 2.85 16 27 S 0.30 3.31 23.27 -107.50 -2.50 0.81 16 28 N -0.51 -6.10 11.03 29.19 0.32 -5.78 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.18 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.40 4.37 7.78 -40.82 -0.32 4.05 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.70 6.41 -51.93 -0.33 0.37 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.68 6.37 -51.93 -0.33 0.35 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.07 1.67 4.49 -51.93 -0.23 1.43 16 42 H 0.02 0.50 7.07 -51.92 -0.37 0.14 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.10 7.44 -51.93 -0.39 0.71 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -32.13 371.91 -7.78 -39.91 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.62 Total: 0.78 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.38 Total: 1.45 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.37 Total: -55.35 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.12 Total: -11.27 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.50 Total: 0.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.13 -7.78 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025422793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.000 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds