Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99671 * 2 1 4 4 H 1.08995 * 109.47064 * 30.00246 * 3 2 1 5 5 C 1.53005 * 109.46923 * 270.00109 * 3 2 1 6 6 C 1.50697 * 109.47006 * 150.00271 * 3 2 1 7 7 N 1.29429 * 124.80376 * 45.02097 * 6 3 2 8 8 C 1.30942 * 117.36355 * 179.68558 * 7 6 3 9 9 C 1.35661 * 114.18888 * 0.53087 * 8 7 6 10 10 C 1.46684 * 126.13100 * 179.78152 * 9 8 7 11 11 O 1.21689 * 120.00099 * 179.68672 * 10 9 8 12 12 N 1.34777 * 120.00220 * 359.69140 * 10 9 8 13 13 C 1.46494 * 120.00340 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47011 * 173.92973 * 13 12 10 15 15 H 1.08998 * 109.99798 * 61.75367 * 14 13 12 16 16 C 1.54325 * 109.88031 * 182.84639 * 14 13 12 17 17 C 1.55155 * 102.94272 * 141.61362 * 16 14 13 18 18 C 1.55132 * 101.48350 * 324.33135 * 17 16 14 19 19 N 1.47020 * 109.88491 * 300.65214 * 14 13 12 20 20 C 1.36940 * 125.64494 * 61.60854 * 19 14 13 21 21 H 1.07995 * 120.00044 * 29.34428 * 20 19 14 22 22 C 1.38806 * 119.99785 * 209.34457 * 20 19 14 23 23 N 1.31626 * 120.00232 * 188.53075 * 22 20 19 24 24 Si 1.86802 * 120.00254 * 8.53520 * 22 20 19 25 25 H 1.48499 * 109.47246 * 174.59030 * 24 22 20 26 26 H 1.48496 * 109.46953 * 54.58911 * 24 22 20 27 27 H 1.48502 * 109.47091 * 294.59163 * 24 22 20 28 28 S 1.70952 * 124.80508 * 224.99938 * 6 3 2 29 29 H 1.08992 * 109.46819 * 299.99601 * 1 2 3 30 30 H 1.09001 * 109.47022 * 60.00277 * 1 2 3 31 31 H 1.09008 * 109.46567 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47105 * 60.00455 * 5 3 2 33 33 H 1.09003 * 109.46942 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46970 * 300.00254 * 5 3 2 35 35 H 1.08003 * 122.90836 * 180.34330 * 8 7 6 36 36 H 0.97009 * 119.99732 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47262 * 53.93402 * 13 12 10 38 38 H 1.09001 * 109.47450 * 293.92901 * 13 12 10 39 39 H 1.09002 * 110.71955 * 259.97459 * 16 14 13 40 40 H 1.09003 * 110.72208 * 23.24882 * 16 14 13 41 41 H 1.08995 * 111.00732 * 82.56882 * 17 16 14 42 42 H 1.09005 * 111.00284 * 206.42533 * 17 16 14 43 43 H 1.09004 * 110.49598 * 278.45670 * 18 17 16 44 44 H 1.09004 * 110.34497 * 156.06304 * 18 17 16 45 45 H 0.97008 * 119.99137 * 4.92078 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.3386 1.2640 0.7103 7 7 4.2433 0.3555 0.5327 8 6 5.3500 0.4649 1.2239 9 6 5.3825 1.5366 2.0551 10 6 6.4864 1.9054 2.9479 11 8 6.3990 2.8989 3.6453 12 7 7.5975 1.1441 2.9959 13 6 8.7002 1.5128 3.8871 14 6 9.7641 0.4134 3.8638 15 1 10.1701 0.3088 2.8577 16 6 10.8968 0.7582 4.8537 17 6 11.2569 -0.6219 5.4642 18 6 9.8654 -1.3050 5.5256 19 7 9.1757 -0.8611 4.3007 20 6 8.1525 -1.5233 3.6763 21 1 8.0177 -1.4256 2.6093 22 6 7.2887 -2.3202 4.4149 23 7 6.4129 -3.0869 3.8004 24 14 7.3690 -2.3045 6.2811 25 1 6.2660 -3.1329 6.8310 26 1 7.2318 -0.9094 6.7707 27 1 8.6732 -2.8589 6.7251 28 16 3.8642 2.4103 1.8645 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.2568 1.8015 -1.9563 33 1 2.6613 2.7670 -1.4426 34 1 2.8828 1.0775 -1.9564 35 1 6.1651 -0.2389 1.1419 36 1 7.6671 0.3520 2.4402 37 1 8.3225 1.6314 4.9027 38 1 9.1405 2.4516 3.5513 39 1 11.7523 1.1825 4.3281 40 1 10.5401 1.4402 5.6256 41 1 11.9372 -1.1715 4.8136 42 1 11.6793 -0.5092 6.4627 43 1 9.3179 -0.9770 6.4093 44 1 9.9753 -2.3895 5.5273 45 1 6.4183 -3.1496 2.8323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027885264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = -6.832930 kcal Electronic energy + Delta-G solvation = -27661.831647 eV Core-core repulsion = 23807.378434 eV Total energy + Delta-G solvation = -3854.453213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.00508 -39.07627 -38.10573 -37.72476 -34.01871 -32.84486 -32.58952 -30.35512 -29.90574 -28.78161 -27.00346 -25.97300 -24.81375 -23.51339 -22.88216 -21.48883 -20.81309 -19.71781 -19.03350 -18.25524 -17.63239 -16.98773 -16.23380 -15.93457 -15.52674 -15.44242 -15.14083 -14.98419 -14.78533 -14.14645 -13.91223 -13.49921 -13.40432 -13.35203 -13.20079 -12.88968 -12.75434 -12.43432 -12.33768 -11.90133 -11.73577 -11.50056 -11.36025 -11.19919 -11.12740 -11.00208 -10.73574 -10.48653 -10.17119 -10.00330 -9.83709 -9.46303 -9.33944 -9.27808 -9.15221 -8.86058 -8.73899 -8.38440 -7.05329 -6.38975 -3.46888 0.38134 1.20396 1.74285 2.68544 3.38011 3.50065 3.53014 3.67301 3.68226 3.81607 4.02102 4.54627 4.55452 4.83874 4.90951 5.04211 5.09602 5.14806 5.18573 5.22279 5.26303 5.39281 5.39489 5.46028 5.52055 5.52613 5.55099 5.78108 5.86645 5.94498 6.04997 6.07265 6.18204 6.21699 6.26871 6.34857 6.60973 6.72285 6.78700 6.91997 6.98647 7.67742 7.79755 8.04514 8.23725 8.63939 8.89010 9.43148 10.17316 11.06759 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.003457 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.370745 B = 8098.079731 C = 9170.653856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.168 3.832 4 H 0.080 0.920 5 C -0.167 4.167 6 C 0.026 3.974 7 N -0.444 5.444 8 C 0.099 3.901 9 C -0.272 4.272 10 C 0.588 3.412 11 O -0.558 6.558 12 N -0.682 5.682 13 C 0.117 3.883 14 C 0.143 3.857 15 H 0.045 0.955 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.109 3.891 19 N -0.603 5.603 20 C -0.328 4.328 21 H 0.067 0.933 22 C -0.001 4.001 23 N -0.915 5.915 24 Si 1.061 2.939 25 H -0.300 1.300 26 H -0.292 1.292 27 H -0.284 1.284 28 S 0.214 5.786 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.183 0.817 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 10.771 -6.776 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.280 6.280 3 C 0.107 3.893 4 H 0.098 0.902 5 C -0.226 4.226 6 C -0.250 4.250 7 N -0.158 5.158 8 C -0.059 4.059 9 C -0.397 4.397 10 C 0.372 3.628 11 O -0.439 6.439 12 N -0.334 5.334 13 C -0.009 4.009 14 C 0.035 3.965 15 H 0.063 0.937 16 C -0.162 4.162 17 C -0.170 4.170 18 C -0.016 4.016 19 N -0.329 5.329 20 C -0.456 4.456 21 H 0.085 0.915 22 C -0.204 4.204 23 N -0.553 5.553 24 Si 0.893 3.107 25 H -0.228 1.228 26 H -0.219 1.219 27 H -0.211 1.211 28 S 0.472 5.528 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.200 0.800 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.538 11.110 -4.926 13.355 hybrid contribution 1.233 -0.344 -1.561 2.019 sum -4.304 10.766 -6.487 13.285 Atomic orbital electron populations 1.22883 0.80827 1.03333 0.99901 1.88144 1.19450 1.25509 1.94866 1.20433 0.87463 0.86335 0.95110 0.90168 1.22255 1.03156 1.02153 0.95000 1.27247 1.00440 0.96479 1.00818 1.66009 1.00627 1.24617 1.24571 1.22291 0.96000 0.95748 0.91866 1.25875 1.01755 1.03405 1.08626 1.16692 0.81421 0.83271 0.81413 1.90771 1.81210 1.27460 1.44496 1.45864 1.15776 1.28425 1.43358 1.21996 0.87464 0.97344 0.94091 1.21349 0.91548 0.86533 0.97027 0.93718 1.22521 0.97527 0.97529 0.98617 1.22772 0.98005 0.96137 1.00057 1.22215 0.90757 0.98409 0.90200 1.44825 1.40055 1.19039 1.29005 1.19774 1.06264 1.27667 0.91853 0.91546 1.26131 0.92272 0.95719 1.06293 1.70917 1.35241 1.38196 1.10962 0.83919 0.74983 0.75739 0.76065 1.22779 1.21933 1.21114 1.83720 1.08464 1.26264 1.34398 0.93844 0.93870 0.89120 0.91336 0.91217 0.90558 0.79986 0.74898 0.91643 0.92784 0.91411 0.91299 0.91367 0.91695 0.95846 0.92124 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.94 10.32 -35.23 -0.36 -5.31 16 3 C 0.17 2.00 3.23 -27.88 -0.09 1.91 16 4 H 0.08 0.73 7.78 -51.93 -0.40 0.32 16 5 C -0.17 -1.59 9.51 37.16 0.35 -1.24 16 6 C 0.03 0.39 6.28 -13.29 -0.08 0.31 16 7 N -0.44 -7.97 10.49 -11.50 -0.12 -8.09 16 8 C 0.10 1.81 10.93 -18.85 -0.21 1.60 16 9 C -0.27 -5.04 6.48 -37.09 -0.24 -5.28 16 10 C 0.59 12.05 7.79 -12.85 -0.10 11.95 16 11 O -0.56 -12.55 16.95 5.20 0.09 -12.47 16 12 N -0.68 -13.53 4.79 -61.62 -0.30 -13.83 16 13 C 0.12 2.19 5.22 -4.04 -0.02 2.17 16 14 C 0.14 2.61 3.37 -66.95 -0.23 2.38 16 15 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.12 -1.84 6.47 -24.90 -0.16 -2.00 16 17 C -0.13 -2.05 7.10 -24.46 -0.17 -2.22 16 18 C 0.11 2.22 4.52 -2.41 -0.01 2.21 16 19 N -0.60 -13.38 2.86 -162.44 -0.47 -13.84 16 20 C -0.33 -8.37 8.49 -15.06 -0.13 -8.50 16 21 H 0.07 1.74 6.80 -52.49 -0.36 1.38 16 22 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 23 N -0.91 -27.30 13.70 55.49 0.76 -26.54 16 24 Si 1.06 26.37 24.71 -169.99 -4.20 22.17 16 25 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 26 H -0.29 -7.27 7.05 56.52 0.40 -6.87 16 27 H -0.28 -6.41 5.58 56.52 0.32 -6.10 16 28 S 0.21 3.23 23.01 -107.50 -2.47 0.76 16 29 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 31 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.18 3.28 7.15 -52.48 -0.38 2.91 16 36 H 0.41 8.20 4.53 -40.82 -0.18 8.01 16 37 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.99 7.83 -51.93 -0.41 0.58 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.51 5.44 -51.93 -0.28 0.23 16 44 H 0.06 1.31 6.63 -51.93 -0.34 0.97 16 45 H 0.26 7.79 8.73 -40.82 -0.36 7.43 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -33.25 374.23 -8.16 -41.41 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.64 Total: 5.60 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.09 Total: 4.49 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.12 Total: -62.30 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.77 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.20 Total: 22.17 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.47 Total: 0.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.25 -8.16 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027885264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.576 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds