Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99671 * 2 1 4 4 H 1.08995 * 109.47064 * 30.00246 * 3 2 1 5 5 C 1.53005 * 109.46923 * 270.00109 * 3 2 1 6 6 C 1.50697 * 109.47006 * 150.00271 * 3 2 1 7 7 N 1.29429 * 124.80376 * 45.02097 * 6 3 2 8 8 C 1.30942 * 117.36355 * 179.68558 * 7 6 3 9 9 C 1.35661 * 114.18888 * 0.53087 * 8 7 6 10 10 C 1.46684 * 126.13100 * 179.78152 * 9 8 7 11 11 O 1.21689 * 120.00099 * 179.68672 * 10 9 8 12 12 N 1.34777 * 120.00220 * 359.69140 * 10 9 8 13 13 C 1.46494 * 120.00340 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47011 * 173.92973 * 13 12 10 15 15 H 1.08998 * 109.99798 * 61.75367 * 14 13 12 16 16 C 1.54325 * 109.88031 * 182.84639 * 14 13 12 17 17 C 1.55155 * 102.94272 * 141.61362 * 16 14 13 18 18 C 1.55132 * 101.48350 * 324.33135 * 17 16 14 19 19 N 1.47020 * 109.88491 * 300.65214 * 14 13 12 20 20 C 1.36940 * 125.64494 * 61.60854 * 19 14 13 21 21 H 1.07995 * 120.00044 * 29.34428 * 20 19 14 22 22 C 1.38806 * 119.99785 * 209.34457 * 20 19 14 23 23 N 1.31626 * 120.00232 * 188.53075 * 22 20 19 24 24 Si 1.86802 * 120.00254 * 8.53520 * 22 20 19 25 25 H 1.48499 * 109.47246 * 174.59030 * 24 22 20 26 26 H 1.48496 * 109.46953 * 54.58911 * 24 22 20 27 27 H 1.48502 * 109.47091 * 294.59163 * 24 22 20 28 28 S 1.70952 * 124.80508 * 224.99938 * 6 3 2 29 29 H 1.08992 * 109.46819 * 299.99601 * 1 2 3 30 30 H 1.09001 * 109.47022 * 60.00277 * 1 2 3 31 31 H 1.09008 * 109.46567 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47105 * 60.00455 * 5 3 2 33 33 H 1.09003 * 109.46942 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46970 * 300.00254 * 5 3 2 35 35 H 1.08003 * 122.90836 * 180.34330 * 8 7 6 36 36 H 0.97009 * 119.99732 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47262 * 53.93402 * 13 12 10 38 38 H 1.09001 * 109.47450 * 293.92901 * 13 12 10 39 39 H 1.09002 * 110.71955 * 259.97459 * 16 14 13 40 40 H 1.09003 * 110.72208 * 23.24882 * 16 14 13 41 41 H 1.08995 * 111.00732 * 82.56882 * 17 16 14 42 42 H 1.09005 * 111.00284 * 206.42533 * 17 16 14 43 43 H 1.09004 * 110.49598 * 278.45670 * 18 17 16 44 44 H 1.09004 * 110.34497 * 156.06304 * 18 17 16 45 45 H 0.97008 * 119.99137 * 4.92078 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.3386 1.2640 0.7103 7 7 4.2433 0.3555 0.5327 8 6 5.3500 0.4649 1.2239 9 6 5.3825 1.5366 2.0551 10 6 6.4864 1.9054 2.9479 11 8 6.3990 2.8989 3.6453 12 7 7.5975 1.1441 2.9959 13 6 8.7002 1.5128 3.8871 14 6 9.7641 0.4134 3.8638 15 1 10.1701 0.3088 2.8577 16 6 10.8968 0.7582 4.8537 17 6 11.2569 -0.6219 5.4642 18 6 9.8654 -1.3050 5.5256 19 7 9.1757 -0.8611 4.3007 20 6 8.1525 -1.5233 3.6763 21 1 8.0177 -1.4256 2.6093 22 6 7.2887 -2.3202 4.4149 23 7 6.4129 -3.0869 3.8004 24 14 7.3690 -2.3045 6.2811 25 1 6.2660 -3.1329 6.8310 26 1 7.2318 -0.9094 6.7707 27 1 8.6732 -2.8589 6.7251 28 16 3.8642 2.4103 1.8645 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.2568 1.8015 -1.9563 33 1 2.6613 2.7670 -1.4426 34 1 2.8828 1.0775 -1.9564 35 1 6.1651 -0.2389 1.1419 36 1 7.6671 0.3520 2.4402 37 1 8.3225 1.6314 4.9027 38 1 9.1405 2.4516 3.5513 39 1 11.7523 1.1825 4.3281 40 1 10.5401 1.4402 5.6256 41 1 11.9372 -1.1715 4.8136 42 1 11.6793 -0.5092 6.4627 43 1 9.3179 -0.9770 6.4093 44 1 9.9753 -2.3895 5.5273 45 1 6.4183 -3.1496 2.8323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027885264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = -31.502568 kcal Electronic energy + Delta-G solvation = -27662.901403 eV Core-core repulsion = 23807.378434 eV Total energy + Delta-G solvation = -3855.522968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39655 -40.51450 -39.43875 -38.96122 -35.60732 -34.79860 -33.63358 -31.70809 -31.63053 -30.16295 -27.82288 -27.09990 -26.37048 -25.26921 -24.07668 -22.93552 -22.15719 -21.31180 -20.43694 -19.75174 -19.27321 -18.39778 -17.38460 -17.27514 -16.88282 -16.74545 -16.51805 -16.39108 -16.13345 -15.48796 -15.41906 -15.23982 -15.06886 -14.86704 -14.28815 -14.17778 -13.84220 -13.61559 -13.33690 -13.26905 -13.00511 -12.81713 -12.75609 -12.69665 -12.64136 -12.18886 -12.07124 -12.01303 -11.53634 -11.48930 -11.28672 -11.18839 -10.91534 -10.72033 -10.69229 -10.54673 -10.18134 -9.94259 -8.97724 -8.52374 -5.53726 -0.95686 -0.05912 0.43433 1.28563 1.37948 1.47828 1.65653 2.00758 2.29269 2.53039 2.76856 2.92737 3.21047 3.30317 3.63638 3.70490 3.85748 3.97124 3.99232 4.02310 4.05431 4.16033 4.31638 4.41765 4.45592 4.55527 4.61399 4.65080 4.73648 4.75272 4.79243 4.86042 4.88189 5.02049 5.04172 5.14792 5.21122 5.25873 5.42850 5.47819 5.70343 6.10290 6.22352 6.41445 6.51654 6.84455 7.03524 7.47138 8.19799 8.93425 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.003457 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.370745 B = 8098.079731 C = 9170.653856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.399 6.399 3 C 0.160 3.840 4 H 0.114 0.886 5 C -0.161 4.161 6 C 0.035 3.965 7 N -0.478 5.478 8 C 0.100 3.900 9 C -0.312 4.312 10 C 0.585 3.415 11 O -0.583 6.583 12 N -0.687 5.687 13 C 0.117 3.883 14 C 0.139 3.861 15 H 0.052 0.948 16 C -0.114 4.114 17 C -0.117 4.117 18 C 0.095 3.905 19 N -0.622 5.622 20 C -0.292 4.292 21 H 0.053 0.947 22 C -0.057 4.057 23 N -0.960 5.960 24 Si 1.089 2.911 25 H -0.319 1.319 26 H -0.295 1.295 27 H -0.249 1.249 28 S 0.268 5.732 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.172 0.828 36 H 0.408 0.592 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.017 0.983 44 H 0.044 0.956 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 12.937 -6.695 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.319 6.319 3 C 0.099 3.901 4 H 0.132 0.868 5 C -0.220 4.220 6 C -0.240 4.240 7 N -0.193 5.193 8 C -0.058 4.058 9 C -0.436 4.436 10 C 0.371 3.629 11 O -0.467 6.467 12 N -0.337 5.337 13 C -0.008 4.008 14 C 0.033 3.967 15 H 0.070 0.930 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.029 4.029 19 N -0.349 5.349 20 C -0.421 4.421 21 H 0.070 0.930 22 C -0.252 4.252 23 N -0.603 5.603 24 Si 0.918 3.082 25 H -0.249 1.249 26 H -0.223 1.223 27 H -0.174 1.174 28 S 0.526 5.474 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.189 0.811 36 H 0.247 0.753 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.738 13.308 -4.833 14.931 hybrid contribution 0.965 -0.936 -1.687 2.158 sum -3.773 12.372 -6.521 14.485 Atomic orbital electron populations 1.23111 0.78610 1.04133 1.01726 1.88091 1.21995 1.26625 1.95149 1.20849 0.86103 0.86681 0.96469 0.86804 1.22247 1.04338 1.02123 0.93307 1.28083 1.01050 0.95232 0.99641 1.66061 1.01156 1.26279 1.25778 1.22198 0.96196 0.95504 0.91943 1.25842 1.03337 1.04942 1.09474 1.16927 0.81808 0.82882 0.81273 1.90736 1.81783 1.28464 1.45692 1.45955 1.16235 1.28197 1.43347 1.22051 0.87236 0.98750 0.92786 1.21571 0.92239 0.84439 0.98482 0.92987 1.22560 0.97108 0.97442 0.98071 1.22732 0.94907 0.95680 1.02244 1.22338 0.93642 0.98064 0.88878 1.45001 1.39537 1.20966 1.29352 1.19711 1.05760 1.25354 0.91317 0.92971 1.26912 0.92940 0.96661 1.08725 1.70988 1.37928 1.41311 1.10044 0.83587 0.75913 0.75251 0.73416 1.24876 1.22283 1.17363 1.83399 1.05806 1.24903 1.33246 0.92638 0.91326 0.89008 0.88564 0.89728 0.92798 0.81108 0.75256 0.93833 0.90215 0.87773 0.90430 0.90382 0.88616 0.96533 0.93778 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -10.50 10.32 -148.98 -1.54 -12.04 16 3 C 0.16 3.51 3.23 29.85 0.10 3.61 16 4 H 0.11 1.69 7.78 -2.39 -0.02 1.67 16 5 C -0.16 -2.74 9.51 71.98 0.68 -2.05 16 6 C 0.03 1.04 6.28 88.46 0.56 1.60 16 7 N -0.48 -17.62 10.49 -190.30 -2.00 -19.62 16 8 C 0.10 3.86 10.93 84.23 0.92 4.78 16 9 C -0.31 -11.83 6.48 23.88 0.15 -11.67 16 10 C 0.59 24.46 7.79 86.45 0.67 25.14 16 11 O -0.58 -26.40 16.95 -4.31 -0.07 -26.47 16 12 N -0.69 -27.68 4.79 -467.08 -2.24 -29.92 16 13 C 0.12 4.27 5.22 86.38 0.45 4.72 16 14 C 0.14 4.81 3.37 45.34 0.15 4.96 16 15 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.11 -2.91 6.47 31.78 0.21 -2.70 16 17 C -0.12 -3.20 7.10 32.06 0.23 -2.97 16 18 C 0.10 3.71 4.52 86.93 0.39 4.10 16 19 N -0.62 -27.15 2.86 -667.83 -1.91 -29.07 16 20 C -0.29 -15.24 8.49 84.03 0.71 -14.53 16 21 H 0.05 2.85 6.80 -2.91 -0.02 2.83 16 22 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 23 N -0.96 -60.01 13.70 21.65 0.30 -59.71 16 24 Si 1.09 54.33 24.71 68.60 1.70 56.03 16 25 H -0.32 -16.85 7.11 99.48 0.71 -16.14 16 26 H -0.30 -14.67 7.05 99.48 0.70 -13.97 16 27 H -0.25 -10.84 5.58 99.48 0.56 -10.29 16 28 S 0.27 7.88 23.01 -56.49 -1.30 6.58 16 29 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 31 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.10 1.11 7.87 -2.39 -0.02 1.09 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.17 6.71 7.15 -2.91 -0.02 6.69 16 36 H 0.41 16.88 4.53 -92.70 -0.42 16.46 16 37 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 1.90 7.83 -2.39 -0.02 1.88 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.02 0.69 5.44 -2.38 -0.01 0.68 16 44 H 0.04 1.84 6.63 -2.38 -0.02 1.83 16 45 H 0.25 15.73 8.73 -92.70 -0.81 14.92 16 Total: -1.00 -75.88 374.23 0.25 -75.63 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.40 Total: 24.82 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.92 Total: 13.77 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -5.85 Total: -138.31 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.61 Total: -38.51 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 1.70 Total: 56.03 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -1.30 Total: 6.58 kcal Total: -75.88 0.25 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027885264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.126 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds