Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99583 * 2 1 4 4 H 1.08993 * 109.47027 * 29.99862 * 3 2 1 5 5 C 1.53002 * 109.47078 * 269.99897 * 3 2 1 6 6 C 1.50695 * 109.46867 * 149.99993 * 3 2 1 7 7 N 1.29433 * 124.80458 * 44.97560 * 6 3 2 8 8 C 1.30947 * 117.36150 * 179.72650 * 7 6 3 9 9 C 1.35657 * 114.19171 * 0.52901 * 8 7 6 10 10 C 1.46688 * 126.12949 * 179.78557 * 9 8 7 11 11 O 1.21685 * 119.99992 * 179.68620 * 10 9 8 12 12 N 1.34772 * 119.99787 * 359.68520 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47382 * 89.99627 * 24 22 20 26 26 H 1.48497 * 109.47458 * 210.00077 * 24 22 20 27 27 H 1.48502 * 109.47300 * 329.99908 * 24 22 20 28 28 S 1.70954 * 124.80492 * 224.99941 * 6 3 2 29 29 H 1.09003 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47673 * 299.99751 * 1 2 3 31 31 H 1.09001 * 109.47451 * 60.00314 * 1 2 3 32 32 H 1.08994 * 109.46933 * 179.97438 * 5 3 2 33 33 H 1.09005 * 109.46854 * 300.00226 * 5 3 2 34 34 H 1.09004 * 109.47234 * 59.99939 * 5 3 2 35 35 H 1.08004 * 122.90075 * 180.34790 * 8 7 6 36 36 H 0.96996 * 120.00164 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 38 38 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 39 39 H 1.08999 * 110.71908 * 336.76021 * 16 14 13 40 40 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 41 41 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 42 42 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 43 43 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 44 44 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 45 45 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3385 1.2640 0.7104 7 7 4.2428 0.3551 0.5334 8 6 5.3492 0.4641 1.2253 9 6 5.3819 1.5359 2.0562 10 6 6.4856 1.9045 2.9495 11 8 6.3983 2.8981 3.6465 12 7 7.5962 1.1426 2.9981 13 6 8.6987 1.5110 3.8898 14 6 9.8737 0.5563 3.6694 15 1 10.1495 0.5418 2.6150 16 6 9.4887 -0.8653 4.1306 17 6 10.7952 -1.3849 4.7893 18 6 11.3512 -0.0918 5.4363 19 7 11.0231 0.9821 4.4812 20 6 11.6804 2.1782 4.3684 21 1 11.5162 2.8052 3.5046 22 6 12.5577 2.5846 5.3644 23 7 12.7575 1.8206 6.4174 24 14 13.4548 4.2158 5.2103 25 1 12.6405 5.2895 5.8344 26 1 14.7672 4.1260 5.8993 27 1 13.6699 4.5288 3.7747 28 16 3.8641 2.4104 1.8646 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.6604 2.7674 -1.4425 33 1 2.8829 1.0775 -1.9563 34 1 1.2567 1.8014 -1.9564 35 1 6.1640 -0.2401 1.1437 36 1 7.6659 0.3508 2.4423 37 1 8.3659 1.4445 4.9257 38 1 9.0145 2.5317 3.6745 39 1 8.6795 -0.8281 4.8599 40 1 9.2127 -1.4858 3.2780 41 1 11.4832 -1.7728 4.0380 42 1 10.5800 -2.1392 5.5462 43 1 12.4308 -0.1668 5.5667 44 1 10.8658 0.0917 6.3949 45 1 13.3703 2.1047 7.1136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027885265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = -9.753784 kcal Electronic energy + Delta-G solvation = -26508.269228 eV Core-core repulsion = 22653.689358 eV Total energy + Delta-G solvation = -3854.579870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.38021 -39.32133 -38.31319 -37.60087 -34.38315 -32.92204 -32.49253 -30.54783 -29.50467 -28.41033 -27.26045 -26.26511 -24.88599 -23.91026 -23.23446 -21.60280 -20.32125 -19.82347 -19.40684 -18.57098 -17.63051 -16.71053 -16.53301 -16.09224 -15.79271 -15.54679 -15.24982 -14.83617 -14.62284 -14.38742 -14.17362 -13.86665 -13.61976 -13.42075 -13.11550 -13.02421 -12.72912 -12.16292 -12.14052 -11.91805 -11.85993 -11.76099 -11.48194 -11.39184 -10.96704 -10.81620 -10.53677 -10.25817 -10.20457 -10.10152 -9.91255 -9.85882 -9.73564 -9.68869 -9.62585 -9.24503 -8.78738 -8.60269 -6.87573 -5.78804 -3.15599 -0.00836 0.83156 1.38810 2.27103 3.20230 3.30693 3.38440 3.41770 3.45416 3.46277 3.66780 4.27435 4.46561 4.57575 4.65753 4.78370 4.85553 4.92668 5.01421 5.15705 5.25772 5.28354 5.29713 5.36153 5.46877 5.59051 5.67710 5.77022 5.77969 5.98913 6.09298 6.20725 6.42728 6.48963 6.53742 6.61719 6.64559 6.74674 7.00123 7.38170 7.49757 7.57098 7.61125 7.77431 8.22231 8.27642 9.14991 9.75424 10.41968 11.32802 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002228 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.061787 B =12564.279233 C =13376.221234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.026 3.974 7 N -0.449 5.449 8 C 0.086 3.914 9 C -0.279 4.279 10 C 0.585 3.415 11 O -0.535 6.535 12 N -0.707 5.707 13 C 0.109 3.891 14 C 0.151 3.849 15 H 0.039 0.961 16 C -0.129 4.129 17 C -0.148 4.148 18 C 0.171 3.829 19 N -0.588 5.588 20 C -0.235 4.235 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.915 5.915 24 Si 0.911 3.089 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 S 0.236 5.764 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.183 0.817 36 H 0.397 0.603 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.967 -4.404 -13.359 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.249 4.249 7 N -0.163 5.163 8 C -0.073 4.073 9 C -0.404 4.404 10 C 0.369 3.631 11 O -0.413 6.413 12 N -0.358 5.358 13 C -0.015 4.015 14 C 0.043 3.957 15 H 0.057 0.943 16 C -0.167 4.167 17 C -0.187 4.187 18 C 0.046 3.954 19 N -0.312 5.312 20 C -0.363 4.363 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.561 5.561 24 Si 0.741 3.259 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.206 1.206 28 S 0.494 5.506 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.283 -3.218 -12.625 26.680 hybrid contribution 1.026 0.048 -0.273 1.063 sum -22.256 -3.170 -12.897 25.918 Atomic orbital electron populations 1.22896 0.80595 1.03364 1.00149 1.88098 1.19643 1.25588 1.94926 1.20463 0.87354 0.86350 0.95302 0.89991 1.22268 1.03356 1.02289 0.94797 1.27304 1.00435 0.96353 1.00832 1.66028 1.00706 1.25403 1.24192 1.22252 0.96120 0.96523 0.92385 1.26024 1.02149 1.03356 1.08889 1.16736 0.81312 0.83533 0.81545 1.90867 1.80686 1.26303 1.43469 1.45932 1.16833 1.28487 1.44517 1.22378 0.85050 1.01317 0.92796 1.21147 0.87306 0.91445 0.95825 0.94300 1.22660 0.98316 0.95948 0.99740 1.23024 0.96473 0.99530 0.99662 1.21480 1.00294 0.82809 0.90785 1.44496 1.29845 1.16428 1.40429 1.18991 1.19481 0.94716 1.03104 0.90592 1.24911 1.00657 0.98447 0.95871 1.69938 1.39193 1.36876 1.10106 0.86135 0.78829 0.83408 0.77487 1.21366 1.21630 1.20565 1.84023 1.07661 1.25565 1.33327 0.89093 0.93754 0.93683 0.91067 0.90534 0.91167 0.79972 0.76940 0.91600 0.90717 0.91761 0.92291 0.92254 0.92266 0.90728 0.95642 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.43 10.32 -35.23 -0.36 -3.80 16 3 C 0.17 1.35 3.23 -27.88 -0.09 1.26 16 4 H 0.08 0.46 7.78 -51.93 -0.40 0.06 16 5 C -0.17 -1.11 9.51 37.16 0.35 -0.76 16 6 C 0.03 0.28 6.28 -13.29 -0.08 0.19 16 7 N -0.45 -5.49 10.49 -11.50 -0.12 -5.61 16 8 C 0.09 0.99 10.93 -18.85 -0.21 0.78 16 9 C -0.28 -3.66 6.48 -37.09 -0.24 -3.90 16 10 C 0.59 9.46 7.79 -12.85 -0.10 9.36 16 11 O -0.53 -10.79 16.96 5.20 0.09 -10.70 16 12 N -0.71 -10.58 5.39 -61.62 -0.33 -10.91 16 13 C 0.11 2.07 5.09 -4.04 -0.02 2.05 16 14 C 0.15 2.92 3.22 -66.95 -0.22 2.70 16 15 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.13 -2.08 6.07 -24.83 -0.15 -2.23 16 17 C -0.15 -2.66 7.10 -24.52 -0.17 -2.83 16 18 C 0.17 4.02 5.42 -2.53 -0.01 4.01 16 19 N -0.59 -14.38 3.13 -162.57 -0.51 -14.88 16 20 C -0.23 -6.37 9.73 -15.06 -0.15 -6.52 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 23 N -0.92 -26.46 10.54 55.49 0.58 -25.87 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 S 0.24 2.60 23.01 -107.50 -2.47 0.12 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 35 H 0.18 1.60 7.15 -52.48 -0.38 1.22 16 36 H 0.40 4.63 6.96 -40.82 -0.28 4.34 16 37 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 38 H 0.07 1.62 7.86 -51.93 -0.41 1.21 16 39 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 1.96 6.86 -51.93 -0.36 1.60 16 44 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -33.70 385.31 -9.24 -42.94 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.81 Total: 0.65 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.09 Total: 5.21 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.38 Total: -57.28 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.28 Total: -14.50 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.47 Total: 0.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.70 -9.24 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027885265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.185 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds