Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99709 * 2 1 4 4 H 1.09004 * 109.46884 * 329.99991 * 3 2 1 5 5 C 1.52992 * 109.47538 * 89.99730 * 3 2 1 6 6 C 1.50699 * 109.46979 * 210.00222 * 3 2 1 7 7 N 1.28647 * 124.72060 * 135.28932 * 6 3 2 8 8 C 1.33562 * 115.76598 * 180.18439 * 7 6 3 9 9 C 1.47264 * 123.14491 * 179.82847 * 8 7 6 10 10 O 1.21633 * 120.00306 * 179.73168 * 9 8 7 11 11 N 1.34777 * 119.99695 * 359.73899 * 9 8 7 12 12 C 1.46499 * 119.99693 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46991 * 174.10747 * 12 11 9 14 14 H 1.09003 * 109.87432 * 56.87340 * 13 12 11 15 15 C 1.54321 * 109.88369 * 177.89120 * 13 12 11 16 16 C 1.55156 * 102.94327 * 141.60823 * 15 13 12 17 17 C 1.54910 * 101.58246 * 324.49574 * 16 15 13 18 18 N 1.47026 * 109.87973 * 295.69985 * 13 12 11 19 19 C 1.36929 * 125.65218 * 61.62069 * 18 13 12 20 20 H 1.08000 * 119.99741 * 324.05282 * 19 18 13 21 21 C 1.38808 * 120.00451 * 144.05347 * 19 18 13 22 22 N 1.31616 * 120.00515 * 162.29655 * 21 19 18 23 23 Si 1.86803 * 119.99527 * 342.30254 * 21 19 18 24 24 H 1.48495 * 109.47215 * 93.98387 * 23 21 19 25 25 H 1.48501 * 109.46936 * 213.98216 * 23 21 19 26 26 H 1.48495 * 109.47097 * 333.98153 * 23 21 19 27 27 C 1.35210 * 113.71352 * 359.56504 * 8 7 6 28 28 S 1.70774 * 124.72024 * 315.02060 * 6 3 2 29 29 H 1.08999 * 109.47400 * 60.00267 * 1 2 3 30 30 H 1.09002 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47625 * 300.00111 * 1 2 3 32 32 H 1.09002 * 109.47454 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47280 * 300.00436 * 5 3 2 34 34 H 1.09009 * 109.46781 * 59.99721 * 5 3 2 35 35 H 0.97000 * 120.00333 * 0.26754 * 11 9 8 36 36 H 1.09000 * 109.46961 * 294.09757 * 12 11 9 37 37 H 1.08992 * 109.47403 * 54.10634 * 12 11 9 38 38 H 1.09003 * 110.72098 * 259.97386 * 15 13 12 39 39 H 1.09001 * 110.72056 * 23.24129 * 15 13 12 40 40 H 1.08995 * 111.00627 * 82.57525 * 16 15 13 41 41 H 1.09003 * 111.00068 * 206.42620 * 16 15 13 42 42 H 1.08995 * 110.36531 * 155.84696 * 17 16 15 43 43 H 1.09002 * 110.36682 * 278.06298 * 17 16 15 44 44 H 0.96998 * 120.00395 * 180.02562 * 22 21 19 45 45 H 1.08006 * 125.58405 * 180.19145 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3386 1.2640 -0.7105 7 7 3.7346 2.1305 -1.5749 8 6 4.9451 1.9177 -2.0977 9 6 5.5554 2.8045 -3.1026 10 8 6.6646 2.5588 -3.5371 11 7 4.8849 3.8885 -3.5407 12 6 5.4918 4.7703 -4.5408 13 6 4.4752 5.8302 -4.9703 14 1 4.1279 6.3852 -4.0988 15 6 5.1215 6.7968 -5.9848 16 6 3.9710 7.0653 -6.9906 17 6 3.2632 5.6879 -7.0284 18 7 3.3371 5.1874 -5.6436 19 6 2.4870 4.2748 -5.0785 20 1 2.8641 3.5523 -4.3698 21 6 1.1407 4.2783 -5.4163 22 7 0.3965 3.2220 -5.1657 23 14 0.3851 5.7822 -6.2267 24 1 0.4128 5.6159 -7.7021 25 1 -1.0203 5.9357 -5.7723 26 1 1.1619 6.9903 -5.8501 27 6 5.5602 0.8151 -1.6139 28 16 4.5303 0.0637 -0.4753 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6613 2.7671 1.4424 33 1 1.2568 1.8015 1.9562 34 1 2.8829 1.0776 1.9563 35 1 4.0020 4.0867 -3.1913 36 1 6.3664 5.2589 -4.1114 37 1 5.7928 4.1831 -5.4082 38 1 5.4292 7.7207 -5.4951 39 1 5.9672 6.3234 -6.4837 40 1 3.2998 7.8395 -6.6188 41 1 4.3641 7.3297 -7.9723 42 1 2.2236 5.8040 -7.3348 43 1 3.7846 5.0120 -7.7062 44 1 -0.5442 3.2243 -5.4021 45 1 6.5412 0.4660 -1.9005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027886821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -4.035451 kcal Electronic energy + Delta-G solvation = -27870.470389 eV Core-core repulsion = 24016.138484 eV Total energy + Delta-G solvation = -3854.331905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22855 -38.80602 -38.10204 -37.51590 -33.99377 -32.62563 -32.49533 -29.95611 -29.73508 -29.32976 -26.91208 -25.99644 -24.77608 -23.97740 -22.69979 -21.08208 -20.58722 -19.78382 -19.37325 -18.41892 -17.00254 -16.37894 -16.29361 -16.14271 -15.81038 -15.46185 -15.06466 -14.93309 -14.55796 -14.00158 -13.94945 -13.41573 -13.32088 -13.02652 -12.96078 -12.77019 -12.50715 -12.40512 -12.22682 -11.95072 -11.75830 -11.73532 -11.32447 -11.26948 -11.10964 -10.90129 -10.71196 -10.47154 -10.18623 -9.93105 -9.82989 -9.69419 -9.58153 -9.51256 -9.46452 -8.81055 -8.56855 -8.30290 -6.82508 -5.98357 -3.43413 0.66878 1.36907 1.79312 2.22344 3.30663 3.34429 3.44002 3.49494 3.77130 3.86515 4.37093 4.51689 4.83190 4.93789 5.01455 5.13665 5.15401 5.26072 5.31542 5.35452 5.42691 5.45058 5.47262 5.53723 5.58217 5.65058 5.70357 5.83853 5.95683 5.97062 6.02760 6.10717 6.13318 6.27027 6.34069 6.40154 6.59338 6.85687 6.86876 6.97552 7.05635 7.60392 7.89554 8.19060 8.34803 8.72249 8.84644 9.65526 10.23185 11.15731 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.004104 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.504791 B = 6821.409644 C = 8718.525708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.162 3.838 4 H 0.100 0.900 5 C -0.167 4.167 6 C 0.026 3.974 7 N -0.420 5.420 8 C 0.021 3.979 9 C 0.588 3.412 10 O -0.556 6.556 11 N -0.686 5.686 12 C 0.115 3.885 13 C 0.143 3.857 14 H 0.048 0.952 15 C -0.120 4.120 16 C -0.136 4.136 17 C 0.117 3.883 18 N -0.601 5.601 19 C -0.255 4.255 20 H 0.096 0.904 21 C 0.036 3.964 22 N -0.899 5.899 23 Si 0.887 3.113 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.269 1.269 27 C -0.237 4.237 28 S 0.226 5.774 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.421 0.579 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.262 0.738 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 -2.016 11.526 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.100 3.900 4 H 0.118 0.882 5 C -0.225 4.225 6 C -0.253 4.253 7 N -0.136 5.136 8 C -0.114 4.114 9 C 0.371 3.629 10 O -0.436 6.436 11 N -0.338 5.338 12 C -0.011 4.011 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.007 4.007 18 N -0.327 5.327 19 C -0.383 4.383 20 H 0.113 0.887 21 C -0.165 4.165 22 N -0.541 5.541 23 Si 0.719 3.281 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.194 1.194 27 C -0.379 4.379 28 S 0.483 5.517 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.169 -2.894 11.729 13.140 hybrid contribution -0.871 1.581 -1.241 2.191 sum 4.298 -1.312 10.488 11.410 Atomic orbital electron populations 1.22857 0.79773 1.03069 1.00771 1.87857 1.20723 1.26411 1.95122 1.20309 0.88636 0.86340 0.94689 0.88220 1.22282 1.03100 1.02330 0.94820 1.26708 1.01768 0.96305 1.00560 1.66885 1.12139 1.27323 1.07239 1.20473 0.91163 0.97746 1.02058 1.17046 0.84564 0.80739 0.80565 1.90745 1.19778 1.73802 1.59271 1.46071 1.21746 1.24775 1.41212 1.22003 0.95742 0.92204 0.91180 1.21284 0.88718 0.91233 0.95221 0.93386 1.22484 0.97774 0.98591 0.97051 1.22780 0.97558 0.98509 0.98576 1.21889 0.97902 0.92362 0.88544 1.44706 1.32308 1.49442 1.06254 1.18756 0.87134 1.07086 1.25286 0.88729 1.25430 0.96035 0.96716 0.98328 1.69825 1.07179 1.27502 1.49558 0.86745 0.77395 0.85711 0.78264 1.21647 1.23286 1.19436 1.26658 1.07083 1.00259 1.03880 1.82680 1.06061 1.27446 1.35494 0.92848 0.89319 0.93828 0.90730 0.91125 0.91543 0.73786 0.92694 0.91486 0.91390 0.91225 0.91615 0.91552 0.94115 0.95125 0.92785 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.42 16 2 O -0.38 -5.02 10.17 -35.23 -0.36 -5.37 16 3 C 0.16 2.16 3.23 -27.89 -0.09 2.07 16 4 H 0.10 1.45 7.79 -51.93 -0.40 1.05 16 5 C -0.17 -1.68 9.51 37.15 0.35 -1.32 16 6 C 0.03 0.41 6.30 -13.61 -0.09 0.32 16 7 N -0.42 -7.79 10.12 -8.51 -0.09 -7.87 16 8 C 0.02 0.40 6.70 -84.52 -0.57 -0.17 16 9 C 0.59 12.14 7.80 -12.59 -0.10 12.04 16 10 O -0.56 -12.28 16.70 5.25 0.09 -12.19 16 11 N -0.69 -14.07 4.35 -61.43 -0.27 -14.33 16 12 C 0.11 2.17 5.15 -4.04 -0.02 2.15 16 13 C 0.14 2.73 3.30 -66.95 -0.22 2.51 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.12 -1.87 6.48 -24.90 -0.16 -2.03 16 16 C -0.14 -2.29 7.08 -24.58 -0.17 -2.46 16 17 C 0.12 2.51 6.24 -2.53 -0.02 2.50 16 18 N -0.60 -14.01 2.67 -162.57 -0.43 -14.45 16 19 C -0.25 -6.92 9.50 -15.06 -0.14 -7.06 16 20 H 0.10 2.72 5.53 -52.49 -0.29 2.43 16 21 C 0.04 1.01 5.45 -17.43 -0.10 0.92 16 22 N -0.90 -26.92 13.97 55.49 0.78 -26.14 16 23 Si 0.89 22.23 24.83 -169.99 -4.22 18.01 16 24 H -0.29 -7.17 6.81 56.52 0.38 -6.78 16 25 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.27 -6.54 7.06 56.52 0.40 -6.14 16 27 C -0.24 -3.63 10.62 29.65 0.31 -3.32 16 28 S 0.23 2.90 22.73 -107.50 -2.44 0.46 16 29 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.42 9.12 5.84 -40.82 -0.24 8.88 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.95 3.21 -51.93 -0.17 0.78 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.19 2.55 8.03 -52.48 -0.42 2.13 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -33.09 376.50 -7.73 -40.82 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.55 Total: 7.83 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 0.09 Total: 7.57 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.01 Total: -62.79 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.27 Total: -17.57 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.22 Total: 18.01 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.44 Total: 0.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.09 -7.73 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027886821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.785 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds