Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99709 * 2 1 4 4 H 1.09004 * 109.46884 * 329.99991 * 3 2 1 5 5 C 1.52992 * 109.47538 * 89.99730 * 3 2 1 6 6 C 1.50699 * 109.46979 * 210.00222 * 3 2 1 7 7 N 1.28647 * 124.72060 * 135.28932 * 6 3 2 8 8 C 1.33562 * 115.76598 * 180.18439 * 7 6 3 9 9 C 1.47264 * 123.14491 * 179.82847 * 8 7 6 10 10 O 1.21633 * 120.00306 * 179.73168 * 9 8 7 11 11 N 1.34777 * 119.99695 * 359.73899 * 9 8 7 12 12 C 1.46499 * 119.99693 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46991 * 174.10747 * 12 11 9 14 14 H 1.09003 * 109.87432 * 56.87340 * 13 12 11 15 15 C 1.54321 * 109.88369 * 177.89120 * 13 12 11 16 16 C 1.55156 * 102.94327 * 141.60823 * 15 13 12 17 17 C 1.54910 * 101.58246 * 324.49574 * 16 15 13 18 18 N 1.47026 * 109.87973 * 295.69985 * 13 12 11 19 19 C 1.36929 * 125.65218 * 61.62069 * 18 13 12 20 20 H 1.08000 * 119.99741 * 324.05282 * 19 18 13 21 21 C 1.38808 * 120.00451 * 144.05347 * 19 18 13 22 22 N 1.31616 * 120.00515 * 162.29655 * 21 19 18 23 23 Si 1.86803 * 119.99527 * 342.30254 * 21 19 18 24 24 H 1.48495 * 109.47215 * 93.98387 * 23 21 19 25 25 H 1.48501 * 109.46936 * 213.98216 * 23 21 19 26 26 H 1.48495 * 109.47097 * 333.98153 * 23 21 19 27 27 C 1.35210 * 113.71352 * 359.56504 * 8 7 6 28 28 S 1.70774 * 124.72024 * 315.02060 * 6 3 2 29 29 H 1.08999 * 109.47400 * 60.00267 * 1 2 3 30 30 H 1.09002 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47625 * 300.00111 * 1 2 3 32 32 H 1.09002 * 109.47454 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47280 * 300.00436 * 5 3 2 34 34 H 1.09009 * 109.46781 * 59.99721 * 5 3 2 35 35 H 0.97000 * 120.00333 * 0.26754 * 11 9 8 36 36 H 1.09000 * 109.46961 * 294.09757 * 12 11 9 37 37 H 1.08992 * 109.47403 * 54.10634 * 12 11 9 38 38 H 1.09003 * 110.72098 * 259.97386 * 15 13 12 39 39 H 1.09001 * 110.72056 * 23.24129 * 15 13 12 40 40 H 1.08995 * 111.00627 * 82.57525 * 16 15 13 41 41 H 1.09003 * 111.00068 * 206.42620 * 16 15 13 42 42 H 1.08995 * 110.36531 * 155.84696 * 17 16 15 43 43 H 1.09002 * 110.36682 * 278.06298 * 17 16 15 44 44 H 0.96998 * 120.00395 * 180.02562 * 22 21 19 45 45 H 1.08006 * 125.58405 * 180.19145 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3386 1.2640 -0.7105 7 7 3.7346 2.1305 -1.5749 8 6 4.9451 1.9177 -2.0977 9 6 5.5554 2.8045 -3.1026 10 8 6.6646 2.5588 -3.5371 11 7 4.8849 3.8885 -3.5407 12 6 5.4918 4.7703 -4.5408 13 6 4.4752 5.8302 -4.9703 14 1 4.1279 6.3852 -4.0988 15 6 5.1215 6.7968 -5.9848 16 6 3.9710 7.0653 -6.9906 17 6 3.2632 5.6879 -7.0284 18 7 3.3371 5.1874 -5.6436 19 6 2.4870 4.2748 -5.0785 20 1 2.8641 3.5523 -4.3698 21 6 1.1407 4.2783 -5.4163 22 7 0.3965 3.2220 -5.1657 23 14 0.3851 5.7822 -6.2267 24 1 0.4128 5.6159 -7.7021 25 1 -1.0203 5.9357 -5.7723 26 1 1.1619 6.9903 -5.8501 27 6 5.5602 0.8151 -1.6139 28 16 4.5303 0.0637 -0.4753 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6613 2.7671 1.4424 33 1 1.2568 1.8015 1.9562 34 1 2.8829 1.0776 1.9563 35 1 4.0020 4.0867 -3.1913 36 1 6.3664 5.2589 -4.1114 37 1 5.7928 4.1831 -5.4082 38 1 5.4292 7.7207 -5.4951 39 1 5.9672 6.3234 -6.4837 40 1 3.2998 7.8395 -6.6188 41 1 4.3641 7.3297 -7.9723 42 1 2.2236 5.8040 -7.3348 43 1 3.7846 5.0120 -7.7062 44 1 -0.5442 3.2243 -5.4021 45 1 6.5412 0.4660 -1.9005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027886821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -28.242301 kcal Electronic energy + Delta-G solvation = -27871.520077 eV Core-core repulsion = 24016.138484 eV Total energy + Delta-G solvation = -3855.381593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60003 -40.21520 -39.41388 -38.87099 -35.58594 -34.62164 -33.55318 -31.77655 -31.13110 -30.61650 -27.81184 -27.35390 -26.35026 -25.52422 -24.08837 -22.47083 -21.91951 -21.39006 -20.75830 -19.84269 -18.75361 -17.94626 -17.55694 -17.38775 -17.18333 -16.73843 -16.48549 -16.35629 -16.07960 -15.47097 -15.21953 -15.01317 -14.81145 -14.66837 -14.20219 -13.99828 -13.87082 -13.64873 -13.63133 -13.27478 -13.05843 -12.96282 -12.93833 -12.65818 -12.62525 -12.27891 -12.11326 -12.06229 -11.73694 -11.53006 -11.39583 -11.21458 -10.90935 -10.83856 -10.66465 -10.62424 -10.14323 -9.80303 -8.74898 -8.14368 -5.55917 -0.56192 0.22698 0.58205 0.84403 1.29230 1.38178 1.50045 2.14307 2.37696 2.40833 2.47165 3.06570 3.27260 3.35073 3.64676 3.90155 3.97526 4.01712 4.08057 4.08626 4.14556 4.25411 4.31508 4.45490 4.49073 4.56988 4.60522 4.69558 4.72905 4.73939 4.83821 4.86480 4.88229 4.98432 4.99515 5.13409 5.17967 5.29855 5.46324 5.48784 5.90469 6.00912 6.24274 6.31762 6.62470 6.84370 7.13066 7.56602 8.21756 9.03350 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.004104 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.504791 B = 6821.409644 C = 8718.525708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.160 3.840 4 H 0.076 0.924 5 C -0.159 4.159 6 C 0.000 4.000 7 N -0.458 5.458 8 C -0.016 4.016 9 C 0.582 3.418 10 O -0.579 6.579 11 N -0.692 5.692 12 C 0.118 3.882 13 C 0.138 3.862 14 H 0.048 0.952 15 C -0.108 4.108 16 C -0.124 4.124 17 C 0.104 3.896 18 N -0.618 5.618 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.024 4.024 22 N -0.947 5.947 23 Si 0.949 3.051 24 H -0.287 1.287 25 H -0.313 1.313 26 H -0.254 1.254 27 C -0.238 4.238 28 S 0.327 5.673 29 H 0.031 0.969 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.022 0.978 43 H 0.028 0.972 44 H 0.259 0.741 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -1.057 12.372 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.099 3.901 4 H 0.094 0.906 5 C -0.217 4.217 6 C -0.279 4.279 7 N -0.175 5.175 8 C -0.152 4.152 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.343 5.343 12 C -0.008 4.008 13 C 0.032 3.968 14 H 0.066 0.934 15 C -0.147 4.147 16 C -0.163 4.163 17 C -0.020 4.020 18 N -0.344 5.344 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.220 4.220 22 N -0.592 5.592 23 Si 0.780 3.220 24 H -0.215 1.215 25 H -0.243 1.243 26 H -0.178 1.178 27 C -0.381 4.381 28 S 0.585 5.415 29 H 0.049 0.951 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.481 -1.902 12.574 14.274 hybrid contribution -1.203 1.123 -1.441 2.187 sum 5.279 -0.780 11.133 12.346 Atomic orbital electron populations 1.23025 0.78504 1.04441 1.00881 1.87810 1.22091 1.26158 1.95271 1.20394 0.87397 0.86150 0.96202 0.90635 1.22243 1.04569 1.02313 0.92558 1.27184 1.03439 0.97035 1.00219 1.66845 1.12617 1.29339 1.08686 1.20317 0.92228 0.99151 1.03484 1.17411 0.84373 0.80819 0.80759 1.90701 1.20605 1.74412 1.60407 1.46175 1.21398 1.25250 1.41437 1.22028 0.96510 0.91808 0.90412 1.21517 0.87425 0.91708 0.96152 0.93443 1.22518 0.97400 0.98993 0.95747 1.22752 0.97392 0.95216 1.00893 1.22073 0.97453 0.95263 0.87196 1.44857 1.32609 1.49264 1.07712 1.18736 0.87664 1.06814 1.23572 0.91331 1.26037 0.96747 0.99031 1.00196 1.69960 1.07289 1.29460 1.52504 0.85741 0.76012 0.82988 0.77255 1.21481 1.24261 1.17834 1.27021 1.07988 0.99339 1.03715 1.82244 1.02704 1.24088 1.32460 0.95055 0.87320 0.91437 0.90958 0.89150 0.90202 0.74675 0.90182 0.93415 0.87900 0.89689 0.91585 0.88077 0.96003 0.95397 0.93159 0.78047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 113.37 1.23 1.78 16 2 O -0.39 -10.10 10.17 -148.98 -1.52 -11.61 16 3 C 0.16 4.30 3.23 29.85 0.10 4.40 16 4 H 0.08 2.36 7.79 -2.38 -0.02 2.34 16 5 C -0.16 -2.99 9.51 71.98 0.68 -2.30 16 6 C 0.00 0.00 6.30 88.57 0.56 0.56 16 7 N -0.46 -17.72 10.12 -180.83 -1.83 -19.55 16 8 C -0.02 -0.62 6.70 40.56 0.27 -0.35 16 9 C 0.58 24.87 7.80 86.62 0.68 25.55 16 10 O -0.58 -26.13 16.70 -4.14 -0.07 -26.20 16 11 N -0.69 -29.39 4.35 -466.52 -2.03 -31.42 16 12 C 0.12 4.44 5.15 86.38 0.44 4.89 16 13 C 0.14 5.12 3.30 45.34 0.15 5.27 16 14 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 15 C -0.11 -2.96 6.48 31.78 0.21 -2.76 16 16 C -0.12 -3.74 7.08 31.99 0.23 -3.51 16 17 C 0.10 4.32 6.24 86.85 0.54 4.86 16 18 N -0.62 -28.78 2.67 -668.24 -1.79 -30.56 16 19 C -0.24 -13.37 9.50 84.03 0.80 -12.57 16 20 H 0.07 4.17 5.53 -2.91 -0.02 4.15 16 21 C -0.02 -1.40 5.45 84.86 0.46 -0.94 16 22 N -0.95 -59.38 13.97 21.65 0.30 -59.08 16 23 Si 0.95 47.04 24.83 68.60 1.70 48.74 16 24 H -0.29 -13.95 6.81 99.48 0.68 -13.27 16 25 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 26 H -0.25 -11.76 7.06 99.48 0.70 -11.06 16 27 C -0.24 -7.19 10.62 67.12 0.71 -6.48 16 28 S 0.33 7.87 22.73 -56.49 -1.28 6.58 16 29 H 0.03 0.77 8.08 -2.39 -0.02 0.75 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.33 7.87 -2.39 -0.02 1.32 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.41 18.89 5.84 -92.71 -0.54 18.35 16 36 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.08 2.10 7.85 -2.39 -0.02 2.08 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.02 1.00 3.21 -2.39 -0.01 0.99 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.20 5.31 8.03 -2.91 -0.02 5.29 16 Total: -1.00 -75.71 376.50 0.99 -74.72 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.44 Total: 29.96 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 7.06 Total: 18.40 kcal Atomic # 7 Polarization: -135.26 SS G_CDS: -5.34 Total: -140.61 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.58 Total: -37.81 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.70 Total: 48.74 kcal Atomic # 16 Polarization: 7.87 SS G_CDS: -1.28 Total: 6.58 kcal Total: -75.71 0.99 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027886821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.477 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds