Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 113.99858 * 2 1 4 4 H 1.08996 * 109.47415 * 329.99812 * 3 2 1 5 5 C 1.52995 * 109.47258 * 90.00454 * 3 2 1 6 6 C 1.50701 * 109.46855 * 210.00075 * 3 2 1 7 7 N 1.28654 * 124.72156 * 135.00260 * 6 3 2 8 8 C 1.33556 * 115.76695 * 179.73295 * 7 6 3 9 9 C 1.47271 * 123.13872 * 179.97438 * 8 7 6 10 10 O 1.21632 * 120.00001 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99998 * 359.97438 * 9 8 7 12 12 C 1.46503 * 120.00041 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47148 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.64200 * 305.69745 * 13 12 11 15 15 C 1.55161 * 110.72013 * 182.56209 * 13 12 11 16 16 C 1.54909 * 101.58045 * 206.13551 * 15 13 12 17 17 N 1.47423 * 104.83391 * 37.00527 * 16 15 13 18 18 C 1.36939 * 125.64456 * 155.90582 * 17 16 15 19 19 H 1.08004 * 119.99285 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00492 * 359.97438 * 18 17 16 21 21 N 1.31622 * 119.99559 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46774 * 120.00097 * 22 20 18 25 25 H 1.48503 * 109.46901 * 240.00011 * 22 20 18 26 26 C 1.47313 * 108.73833 * 335.71661 * 17 16 15 27 27 C 1.35206 * 113.71827 * 359.97438 * 8 7 6 28 28 S 1.70771 * 124.72134 * 314.69596 * 6 3 2 29 29 H 1.09000 * 109.47227 * 300.00132 * 1 2 3 30 30 H 1.09004 * 109.47243 * 59.99848 * 1 2 3 31 31 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47451 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46565 * 299.99672 * 5 3 2 34 34 H 1.08996 * 109.47432 * 59.99368 * 5 3 2 35 35 H 0.97000 * 120.00272 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.47229 * 300.00720 * 12 11 9 37 37 H 1.08999 * 109.46774 * 59.99831 * 12 11 9 38 38 H 1.09003 * 111.00016 * 324.20744 * 15 13 12 39 39 H 1.08996 * 111.00606 * 88.01705 * 15 13 12 40 40 H 1.09000 * 110.36816 * 155.85046 * 16 15 13 41 41 H 1.08998 * 110.36484 * 278.05517 * 16 15 13 42 42 H 0.97003 * 119.99742 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.06437 * 241.87152 * 26 17 16 44 44 H 1.08999 * 109.85139 * 120.60921 * 26 17 16 45 45 H 1.08004 * 125.58592 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.3385 1.2639 -0.7104 7 7 3.7325 2.1275 -1.5788 8 6 4.9472 1.9204 -2.0938 9 6 5.5572 2.8068 -3.0994 10 8 6.6682 2.5636 -3.5306 11 7 4.8838 3.8869 -3.5426 12 6 5.4908 4.7690 -4.5425 13 6 4.5252 5.9098 -4.8695 14 1 3.5542 5.5169 -5.1711 15 6 5.1132 6.8271 -5.9742 16 6 4.4056 8.1714 -5.6714 17 7 4.3286 8.2345 -4.2005 18 6 4.2239 9.3785 -3.4552 19 1 4.1733 9.3184 -2.3780 20 6 4.1827 10.6153 -4.0840 21 7 4.2448 10.6885 -5.3967 22 14 4.0391 12.1758 -3.0673 23 1 3.9876 11.8241 -1.6255 24 1 5.2171 13.0432 -3.3230 25 1 2.7993 12.9005 -3.4453 26 6 4.3783 6.8631 -3.6648 27 6 5.5646 0.8210 -1.6059 28 16 4.5334 0.0679 -0.4694 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.6606 2.7673 1.4425 33 1 1.2568 1.8014 1.9563 34 1 2.8829 1.0774 1.9563 35 1 3.9977 4.0807 -3.1991 36 1 6.4194 5.1813 -4.1476 37 1 5.7021 4.2004 -5.4482 38 1 6.1940 6.9220 -5.8688 39 1 4.8502 6.4613 -6.9667 40 1 4.9932 9.0047 -6.0567 41 1 3.4060 8.1803 -6.1060 42 1 4.2156 11.5527 -5.8362 43 1 3.4584 6.6390 -3.1248 44 1 5.2359 6.7560 -3.0007 45 1 6.5478 0.4747 -1.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028542332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -12.678966 kcal Electronic energy + Delta-G solvation = -26562.699458 eV Core-core repulsion = 22707.992742 eV Total energy + Delta-G solvation = -3854.706716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69871 -39.18644 -38.36235 -37.51523 -34.65345 -32.94021 -32.46256 -30.08567 -29.76371 -28.35212 -27.33584 -26.32466 -25.30556 -24.13147 -22.87863 -21.38612 -20.38389 -19.90727 -19.61976 -18.77636 -16.90246 -16.82744 -16.76572 -16.46751 -15.92774 -15.68181 -15.45367 -14.98118 -14.62670 -14.36966 -14.17514 -13.77388 -13.51723 -13.40164 -13.17793 -12.86306 -12.64730 -12.47785 -12.19319 -12.14227 -11.75538 -11.67293 -11.53780 -11.47504 -10.93254 -10.80983 -10.48623 -10.35957 -10.18230 -10.14656 -10.03366 -9.95488 -9.92405 -9.76558 -9.49782 -9.26885 -8.88585 -8.63942 -6.81533 -5.64022 -3.05405 0.22936 0.92857 1.36622 1.71702 2.88257 3.26270 3.33547 3.40389 3.45728 3.48371 3.92296 4.38114 4.49911 4.59793 4.65592 4.86923 4.92805 4.94811 5.00765 5.14553 5.19507 5.27122 5.28472 5.28887 5.43323 5.54306 5.56331 5.67461 5.72215 5.91326 6.08731 6.13238 6.37157 6.45074 6.53584 6.59088 6.61132 6.74988 6.93891 7.08498 7.53326 7.60917 7.64492 7.87226 8.19725 8.37988 9.23833 9.84509 10.49738 11.40097 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.002429 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.997191 B =11525.990953 C =12820.754408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.163 3.837 4 H 0.096 0.904 5 C -0.170 4.170 6 C 0.019 3.981 7 N -0.434 5.434 8 C 0.013 3.987 9 C 0.591 3.409 10 O -0.539 6.539 11 N -0.705 5.705 12 C 0.131 3.869 13 C -0.114 4.114 14 H 0.076 0.924 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.141 3.859 27 C -0.232 4.232 28 S 0.249 5.751 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.012 0.988 42 H 0.251 0.749 43 H 0.020 0.980 44 H 0.025 0.975 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 -24.789 10.806 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.114 0.886 5 C -0.229 4.229 6 C -0.261 4.261 7 N -0.150 5.150 8 C -0.122 4.122 9 C 0.374 3.626 10 O -0.417 6.417 11 N -0.355 5.355 12 C 0.008 3.992 13 C -0.134 4.134 14 H 0.095 0.905 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.015 3.985 27 C -0.374 4.374 28 S 0.506 5.494 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.043 0.957 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.215 -25.302 10.942 27.887 hybrid contribution -0.396 1.722 -0.053 1.767 sum -4.611 -23.580 10.889 26.379 Atomic orbital electron populations 1.22864 0.79673 1.03302 1.00622 1.87885 1.20748 1.26376 1.95138 1.20312 0.88321 0.86129 0.95081 0.88640 1.22308 1.03456 1.02644 0.94460 1.26727 1.02025 0.96774 1.00548 1.66839 1.12908 1.26836 1.08462 1.20422 0.91293 0.97917 1.02603 1.17032 0.84667 0.80482 0.80423 1.90812 1.19047 1.73301 1.58551 1.45919 1.21198 1.25521 1.42841 1.21541 0.96736 0.90154 0.90780 1.22445 0.98278 0.94258 0.98400 0.90539 1.23006 1.00383 0.97978 0.96025 1.21924 0.97433 0.93873 0.84042 1.44589 1.86393 0.99785 1.02336 1.19131 1.42359 0.83277 0.90100 0.90513 1.24789 1.02559 0.97606 0.95868 1.69810 1.57699 1.22984 1.06672 0.85997 0.77276 0.83273 0.78965 1.20554 1.21740 1.21776 1.21381 0.97724 0.85859 0.93532 1.26763 1.07216 1.00106 1.03320 1.82889 1.05217 1.26357 1.34932 0.93458 0.93410 0.89077 0.90458 0.90883 0.91298 0.75397 0.90970 0.91385 0.91799 0.92092 0.87508 0.97035 0.93803 0.96259 0.95739 0.79181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.02 10.17 -35.23 -0.36 -3.38 16 3 C 0.16 1.32 3.23 -27.89 -0.09 1.23 16 4 H 0.10 0.75 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.10 9.51 37.15 0.35 -0.75 16 6 C 0.02 0.19 6.30 -13.61 -0.09 0.10 16 7 N -0.43 -5.41 10.12 -8.51 -0.09 -5.50 16 8 C 0.01 0.18 6.70 -84.53 -0.57 -0.39 16 9 C 0.59 9.20 7.80 -12.59 -0.10 9.10 16 10 O -0.54 -9.71 16.71 5.25 0.09 -9.63 16 11 N -0.70 -10.50 5.43 -61.43 -0.33 -10.83 16 12 C 0.13 2.06 5.00 -4.04 -0.02 2.04 16 13 C -0.11 -1.99 2.98 -88.78 -0.26 -2.25 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.13 -2.55 6.54 -24.58 -0.16 -2.71 16 16 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 17 N -0.60 -15.72 3.40 -169.84 -0.58 -16.30 16 18 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 21 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.14 2.97 6.66 -2.90 -0.02 2.95 16 27 C -0.23 -2.51 10.62 29.65 0.31 -2.20 16 28 S 0.25 2.11 22.74 -107.50 -2.44 -0.34 16 29 H 0.05 0.18 7.87 -51.93 -0.41 -0.22 16 30 H 0.05 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.41 5.77 7.92 -40.82 -0.32 5.45 16 36 H 0.07 1.22 8.00 -51.93 -0.42 0.81 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.53 7.73 -51.93 -0.40 0.13 16 45 H 0.19 1.83 8.03 -52.48 -0.42 1.40 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -33.37 385.83 -9.02 -42.40 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.85 Total: 1.86 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 0.19 Total: 5.23 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.44 Total: -59.22 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.27 Total: -13.01 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.44 Total: -0.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.37 -9.02 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028542332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.716 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds