Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 113.99858 * 2 1 4 4 H 1.08996 * 109.47415 * 329.99812 * 3 2 1 5 5 C 1.52995 * 109.47258 * 90.00454 * 3 2 1 6 6 C 1.50701 * 109.46855 * 210.00075 * 3 2 1 7 7 N 1.28654 * 124.72156 * 135.00260 * 6 3 2 8 8 C 1.33556 * 115.76695 * 179.73295 * 7 6 3 9 9 C 1.47271 * 123.13872 * 179.97438 * 8 7 6 10 10 O 1.21632 * 120.00001 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99998 * 359.97438 * 9 8 7 12 12 C 1.46503 * 120.00041 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47148 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.64200 * 305.69745 * 13 12 11 15 15 C 1.55161 * 110.72013 * 182.56209 * 13 12 11 16 16 C 1.54909 * 101.58045 * 206.13551 * 15 13 12 17 17 N 1.47423 * 104.83391 * 37.00527 * 16 15 13 18 18 C 1.36939 * 125.64456 * 155.90582 * 17 16 15 19 19 H 1.08004 * 119.99285 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00492 * 359.97438 * 18 17 16 21 21 N 1.31622 * 119.99559 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46774 * 120.00097 * 22 20 18 25 25 H 1.48503 * 109.46901 * 240.00011 * 22 20 18 26 26 C 1.47313 * 108.73833 * 335.71661 * 17 16 15 27 27 C 1.35206 * 113.71827 * 359.97438 * 8 7 6 28 28 S 1.70771 * 124.72134 * 314.69596 * 6 3 2 29 29 H 1.09000 * 109.47227 * 300.00132 * 1 2 3 30 30 H 1.09004 * 109.47243 * 59.99848 * 1 2 3 31 31 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47451 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46565 * 299.99672 * 5 3 2 34 34 H 1.08996 * 109.47432 * 59.99368 * 5 3 2 35 35 H 0.97000 * 120.00272 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.47229 * 300.00720 * 12 11 9 37 37 H 1.08999 * 109.46774 * 59.99831 * 12 11 9 38 38 H 1.09003 * 111.00016 * 324.20744 * 15 13 12 39 39 H 1.08996 * 111.00606 * 88.01705 * 15 13 12 40 40 H 1.09000 * 110.36816 * 155.85046 * 16 15 13 41 41 H 1.08998 * 110.36484 * 278.05517 * 16 15 13 42 42 H 0.97003 * 119.99742 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.06437 * 241.87152 * 26 17 16 44 44 H 1.08999 * 109.85139 * 120.60921 * 26 17 16 45 45 H 1.08004 * 125.58592 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.3385 1.2639 -0.7104 7 7 3.7325 2.1275 -1.5788 8 6 4.9472 1.9204 -2.0938 9 6 5.5572 2.8068 -3.0994 10 8 6.6682 2.5636 -3.5306 11 7 4.8838 3.8869 -3.5426 12 6 5.4908 4.7690 -4.5425 13 6 4.5252 5.9098 -4.8695 14 1 3.5542 5.5169 -5.1711 15 6 5.1132 6.8271 -5.9742 16 6 4.4056 8.1714 -5.6714 17 7 4.3286 8.2345 -4.2005 18 6 4.2239 9.3785 -3.4552 19 1 4.1733 9.3184 -2.3780 20 6 4.1827 10.6153 -4.0840 21 7 4.2448 10.6885 -5.3967 22 14 4.0391 12.1758 -3.0673 23 1 3.9876 11.8241 -1.6255 24 1 5.2171 13.0432 -3.3230 25 1 2.7993 12.9005 -3.4453 26 6 4.3783 6.8631 -3.6648 27 6 5.5646 0.8210 -1.6059 28 16 4.5334 0.0679 -0.4694 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.6606 2.7673 1.4425 33 1 1.2568 1.8014 1.9563 34 1 2.8829 1.0774 1.9563 35 1 3.9977 4.0807 -3.1991 36 1 6.4194 5.1813 -4.1476 37 1 5.7021 4.2004 -5.4482 38 1 6.1940 6.9220 -5.8688 39 1 4.8502 6.4613 -6.9667 40 1 4.9932 9.0047 -6.0567 41 1 3.4060 8.1803 -6.1060 42 1 4.2156 11.5527 -5.8362 43 1 3.4584 6.6390 -3.1248 44 1 5.2359 6.7560 -3.0007 45 1 6.5478 0.4747 -1.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028542332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -36.111735 kcal Electronic energy + Delta-G solvation = -26563.715579 eV Core-core repulsion = 22707.992742 eV Total energy + Delta-G solvation = -3855.722837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66264 -40.19891 -39.30495 -38.87965 -36.13677 -34.34237 -33.56129 -31.69944 -30.75551 -29.97873 -27.82733 -27.64509 -26.68116 -25.39418 -24.05181 -22.36486 -21.93729 -21.32727 -20.80628 -19.79849 -18.84224 -17.84771 -17.43321 -17.26759 -17.06101 -16.74056 -16.66716 -16.32938 -16.07207 -15.61510 -15.24745 -15.12712 -14.68278 -14.30641 -14.25914 -14.00243 -13.64824 -13.56993 -13.40639 -13.27839 -13.16333 -12.95503 -12.81802 -12.71223 -12.63186 -12.05739 -11.99581 -11.95924 -11.85291 -11.62571 -11.45067 -11.22178 -10.96422 -10.86840 -10.75887 -10.65933 -10.28591 -9.90958 -8.89615 -7.78507 -5.22838 -0.58964 0.18402 0.57067 0.76445 1.45582 1.46767 1.57127 2.08861 2.18478 2.37030 2.48605 3.22608 3.30871 3.57145 3.62947 3.77674 3.94908 3.99965 4.04138 4.05720 4.10716 4.22905 4.42212 4.51857 4.58166 4.61397 4.63410 4.68791 4.72475 4.77184 4.85445 4.88437 4.91696 5.02596 5.11183 5.19959 5.27537 5.37062 5.46345 5.65021 5.81565 6.01917 6.19766 6.30975 6.51214 7.03058 7.10420 7.77336 8.41238 9.23680 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.002429 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.997191 B =11525.990953 C =12820.754408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.162 3.838 4 H 0.094 0.906 5 C -0.167 4.167 6 C 0.002 3.998 7 N -0.455 5.455 8 C -0.015 4.015 9 C 0.590 3.410 10 O -0.571 6.571 11 N -0.702 5.702 12 C 0.142 3.858 13 C -0.095 4.095 14 H 0.093 0.907 15 C -0.121 4.121 16 C 0.152 3.848 17 N -0.628 5.628 18 C -0.239 4.239 19 H 0.078 0.922 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.268 1.268 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.139 3.861 27 C -0.237 4.237 28 S 0.324 5.676 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.073 0.927 41 H -0.010 1.010 42 H 0.247 0.753 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 -26.749 12.275 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.101 3.899 4 H 0.112 0.888 5 C -0.225 4.225 6 C -0.277 4.277 7 N -0.172 5.172 8 C -0.150 4.150 9 C 0.375 3.625 10 O -0.451 6.451 11 N -0.352 5.352 12 C 0.019 3.981 13 C -0.114 4.114 14 H 0.111 0.889 15 C -0.160 4.160 16 C 0.027 3.973 17 N -0.354 5.354 18 C -0.368 4.368 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.809 3.191 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.014 3.986 27 C -0.380 4.380 28 S 0.582 5.418 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.008 0.992 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.894 -27.295 12.437 30.392 hybrid contribution -0.240 2.225 -0.434 2.280 sum -5.135 -25.070 12.003 28.265 Atomic orbital electron populations 1.23056 0.78291 1.04434 1.01272 1.87850 1.22252 1.26119 1.95251 1.20381 0.87440 0.86409 0.95658 0.88809 1.22295 1.04483 1.02204 0.93562 1.27188 1.03358 0.97015 1.00099 1.66801 1.12816 1.28096 1.09514 1.20180 0.92392 0.98819 1.03641 1.17342 0.84267 0.80486 0.80441 1.90782 1.20327 1.74132 1.59844 1.45850 1.21319 1.25349 1.42650 1.21329 0.95520 0.89740 0.91534 1.22280 0.99456 0.93673 0.95972 0.88856 1.22851 0.99865 0.95095 0.98148 1.21736 0.96251 0.95865 0.83424 1.44909 1.86359 1.01083 1.03078 1.19480 1.42115 0.84598 0.90583 0.90414 1.25642 1.02749 1.00624 0.97040 1.70061 1.58501 1.23256 1.08066 0.84974 0.76827 0.79198 0.78115 1.19204 1.21769 1.21740 1.21517 0.97561 0.84541 0.95009 1.27042 1.07948 0.99576 1.03396 1.82627 1.02762 1.23965 1.32422 0.92101 0.93507 0.87744 0.91189 0.89242 0.90830 0.74887 0.92291 0.90005 0.91660 0.89030 0.90918 0.99165 0.94289 0.95756 0.96224 0.78340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 113.37 1.23 1.43 16 2 O -0.40 -5.43 10.17 -148.98 -1.52 -6.94 16 3 C 0.16 2.36 3.23 29.85 0.10 2.46 16 4 H 0.09 1.37 7.79 -2.39 -0.02 1.35 16 5 C -0.17 -1.84 9.51 71.98 0.68 -1.15 16 6 C 0.00 0.04 6.30 88.57 0.56 0.60 16 7 N -0.46 -10.98 10.12 -180.83 -1.83 -12.81 16 8 C -0.01 -0.38 6.70 40.56 0.27 -0.11 16 9 C 0.59 18.13 7.80 86.62 0.68 18.81 16 10 O -0.57 -20.43 16.71 -4.13 -0.07 -20.50 16 11 N -0.70 -20.38 5.43 -466.51 -2.53 -22.91 16 12 C 0.14 4.29 5.00 86.38 0.43 4.73 16 13 C -0.09 -3.16 2.98 -9.60 -0.03 -3.19 16 14 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 15 C -0.12 -4.44 6.54 31.99 0.21 -4.24 16 16 C 0.15 7.59 5.89 86.86 0.51 8.10 16 17 N -0.63 -33.13 3.40 -691.25 -2.35 -35.48 16 18 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 21 N -0.95 -57.31 10.09 21.65 0.22 -57.09 16 22 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 26 C 0.14 5.82 6.66 86.67 0.58 6.39 16 27 C -0.24 -4.81 10.62 67.12 0.71 -4.10 16 28 S 0.32 4.77 22.74 -56.49 -1.28 3.48 16 29 H 0.06 0.33 7.87 -2.39 -0.02 0.31 16 30 H 0.05 0.39 8.09 -2.38 -0.02 0.37 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.68 7.87 -2.38 -0.02 0.66 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.41 11.34 7.92 -92.71 -0.73 10.60 16 36 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 39 H 0.09 2.83 8.14 -2.39 -0.02 2.82 16 40 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.02 0.85 7.73 -2.39 -0.02 0.83 16 45 H 0.20 3.56 8.03 -2.91 -0.02 3.54 16 Total: -1.00 -73.23 385.83 0.19 -73.05 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.27 Total: 17.44 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 7.26 Total: 13.41 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.49 Total: -128.29 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.58 Total: -27.44 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.28 Total: 3.48 kcal Total: -73.23 0.19 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028542332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.933 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds