Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00019 * 2 1 4 4 H 1.09003 * 109.47320 * 29.99936 * 3 2 1 5 5 C 1.53003 * 109.47103 * 270.00015 * 3 2 1 6 6 C 1.50705 * 109.47063 * 150.00005 * 3 2 1 7 7 N 1.29425 * 124.80242 * 44.97604 * 6 3 2 8 8 C 1.30948 * 117.36317 * 179.72555 * 7 6 3 9 9 C 1.35668 * 114.18951 * 0.52992 * 8 7 6 10 10 C 1.46681 * 126.12995 * 179.78323 * 9 8 7 11 11 O 1.21686 * 119.99746 * 179.68515 * 10 9 8 12 12 N 1.34775 * 120.00050 * 359.68884 * 10 9 8 13 13 C 1.46497 * 119.99944 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47114 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.92180 * 57.44684 * 14 13 12 16 16 C 1.55155 * 111.00532 * 181.35298 * 14 13 12 17 17 C 1.54327 * 102.94571 * 153.57522 * 16 14 13 18 18 N 1.47024 * 107.26774 * 337.80617 * 17 16 14 19 19 C 1.36941 * 125.64618 * 179.20447 * 18 17 16 20 20 H 1.08005 * 119.99780 * 179.68989 * 19 18 17 21 21 C 1.38813 * 119.99913 * 359.69358 * 19 18 17 22 22 N 1.31616 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99719 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47341 * 89.99896 * 23 21 19 25 25 H 1.48503 * 109.46756 * 209.99724 * 23 21 19 26 26 H 1.48496 * 109.46957 * 329.99498 * 23 21 19 27 27 C 1.47426 * 108.70449 * 358.94057 * 18 17 16 28 28 S 1.70945 * 124.80287 * 224.99797 * 6 3 2 29 29 H 1.08999 * 109.46888 * 299.99744 * 1 2 3 30 30 H 1.08999 * 109.47304 * 59.99644 * 1 2 3 31 31 H 1.08995 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46953 * 60.00159 * 5 3 2 33 33 H 1.09000 * 109.46832 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47163 * 299.99658 * 5 3 2 35 35 H 1.07993 * 122.90385 * 180.34498 * 8 7 6 36 36 H 0.97000 * 120.00160 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.46937 * 60.00106 * 13 12 10 38 38 H 1.09002 * 109.47231 * 300.00009 * 13 12 10 39 39 H 1.08999 * 110.71965 * 271.93488 * 16 14 13 40 40 H 1.09000 * 110.72417 * 35.03508 * 16 14 13 41 41 H 1.08995 * 109.88184 * 218.39040 * 17 16 14 42 42 H 1.09002 * 109.88385 * 97.22047 * 17 16 14 43 43 H 0.97001 * 119.99407 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.36518 * 142.96440 * 27 18 17 45 45 H 1.08995 * 110.36673 * 265.17549 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2429 0.3549 0.5334 8 6 5.3493 0.4639 1.2252 9 6 5.3821 1.5358 2.0563 10 6 6.4857 1.9042 2.9495 11 8 6.3985 2.8979 3.6465 12 7 7.5964 1.1423 2.9981 13 6 8.6988 1.5106 3.8898 14 6 9.8287 0.4882 3.7530 15 1 10.1717 0.4230 2.7204 16 6 11.0033 0.8260 4.7088 17 6 11.6578 -0.5502 4.9522 18 7 10.6423 -1.5735 4.6640 19 6 10.8287 -2.9278 4.7444 20 1 10.0144 -3.5995 4.5159 21 6 12.0643 -3.4372 5.1195 22 7 13.0567 -2.6186 5.3975 23 14 12.3188 -5.2846 5.2285 24 1 12.7837 -5.7985 3.9152 25 1 13.3384 -5.5834 6.2660 26 1 11.0368 -5.9403 5.5910 27 6 9.3881 -0.9002 4.2803 28 16 3.8642 2.4102 1.8645 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2568 1.8014 -1.9563 33 1 2.6614 2.7669 -1.4425 34 1 2.8830 1.0775 -1.9563 35 1 6.1640 -0.2403 1.1436 36 1 7.6661 0.3505 2.4422 37 1 8.3436 1.5244 4.9202 38 1 9.0695 2.4995 3.6200 39 1 11.7060 1.5080 4.2302 40 1 10.6316 1.2497 5.6418 41 1 11.9794 -0.6293 5.9906 42 1 12.5116 -0.6775 4.2867 43 1 13.9202 -2.9747 5.6593 44 1 8.8814 -1.4610 3.4949 45 1 8.7366 -0.7894 5.1470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028542968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -34.539477 kcal Electronic energy + Delta-G solvation = -26199.337393 eV Core-core repulsion = 22343.682734 eV Total energy + Delta-G solvation = -3855.654659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38190 -40.48037 -39.26559 -38.92773 -36.11892 -34.41633 -33.55343 -31.89266 -30.91726 -29.62599 -27.82123 -27.31306 -26.89256 -25.22675 -24.03180 -22.71643 -21.90278 -21.41858 -20.52357 -19.47932 -18.89222 -18.41359 -17.36516 -17.19524 -16.69362 -16.63997 -16.51053 -16.32748 -16.06223 -15.64014 -15.32211 -15.17211 -14.83078 -14.58559 -14.15435 -13.96663 -13.82286 -13.59391 -13.43522 -13.25985 -13.03617 -12.79810 -12.72034 -12.63931 -12.59561 -12.03154 -12.00676 -11.98061 -11.85544 -11.56675 -11.49556 -11.43989 -10.89848 -10.70231 -10.67166 -10.52705 -10.23985 -9.99795 -8.89076 -7.84900 -5.20116 -0.92910 -0.03315 0.50282 1.31048 1.45946 1.47591 1.56174 2.04352 2.11896 2.49587 2.78224 2.96828 3.33369 3.57893 3.63796 3.70003 3.83699 4.00672 4.02328 4.03963 4.04783 4.10753 4.44065 4.48439 4.57690 4.62642 4.67645 4.70439 4.78836 4.80425 4.89207 4.91413 4.92839 5.05243 5.09059 5.23315 5.26485 5.43442 5.46348 5.69051 5.79108 6.11029 6.20842 6.33527 6.55023 6.99571 7.11090 7.78846 8.42794 9.25537 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.002155 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.476597 B =12988.812182 C =14388.152764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.395 6.395 3 C 0.158 3.842 4 H 0.111 0.889 5 C -0.164 4.164 6 C 0.037 3.963 7 N -0.480 5.480 8 C 0.101 3.899 9 C -0.315 4.315 10 C 0.596 3.404 11 O -0.574 6.574 12 N -0.702 5.702 13 C 0.146 3.854 14 C -0.096 4.096 15 H 0.092 0.908 16 C -0.122 4.122 17 C 0.182 3.818 18 N -0.629 5.629 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.270 1.270 27 C 0.136 3.864 28 S 0.262 5.738 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.201 0.799 36 H 0.413 0.587 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.003 0.997 42 H 0.013 0.987 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.309 13.093 -13.501 31.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.314 6.314 3 C 0.097 3.903 4 H 0.128 0.872 5 C -0.223 4.223 6 C -0.238 4.238 7 N -0.194 5.194 8 C -0.058 4.058 9 C -0.440 4.440 10 C 0.382 3.618 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.022 3.978 14 C -0.115 4.115 15 H 0.110 0.890 16 C -0.161 4.161 17 C 0.057 3.943 18 N -0.355 5.355 19 C -0.370 4.370 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.195 1.195 27 C 0.011 3.989 28 S 0.521 5.479 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.031 0.969 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -25.703 13.993 -12.875 31.972 hybrid contribution 1.428 -2.131 0.148 2.569 sum -24.275 11.862 -12.727 29.866 Atomic orbital electron populations 1.23096 0.78732 1.04165 1.01588 1.88058 1.21782 1.26470 1.95140 1.20800 0.86590 0.86692 0.96205 0.87164 1.22259 1.04189 1.02134 0.93743 1.27929 1.00908 0.95323 0.99629 1.66123 1.01436 1.26496 1.25384 1.22587 0.96273 0.95955 0.90986 1.25750 1.02861 1.05134 1.10235 1.16819 0.81444 0.82592 0.80936 1.90824 1.81550 1.28027 1.45185 1.45711 1.16164 1.29220 1.44228 1.21271 0.84842 0.97995 0.93704 1.22429 0.94749 0.93884 1.00482 0.88959 1.22719 0.97097 0.96949 0.99290 1.20929 0.90650 0.85816 0.96894 1.44805 1.08829 1.01823 1.80067 1.19463 0.96551 0.82288 1.38709 0.89938 1.25661 0.96042 1.02268 1.02197 1.70190 1.02388 1.33923 1.53568 0.85085 0.77451 0.79795 0.77051 1.21136 1.22251 1.19466 1.21773 0.88380 0.92167 0.96598 1.83833 1.06326 1.24919 1.32809 0.92576 0.91873 0.88812 0.89076 0.89975 0.92555 0.78251 0.74988 0.91734 0.89979 0.89454 0.90958 0.97854 0.96852 0.94467 0.93272 0.96403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.73 10.32 -148.98 -1.54 -8.27 16 3 C 0.16 2.10 3.23 29.85 0.10 2.20 16 4 H 0.11 0.79 7.78 -2.39 -0.02 0.78 16 5 C -0.16 -1.68 9.51 71.98 0.68 -1.00 16 6 C 0.04 0.68 6.28 88.46 0.56 1.23 16 7 N -0.48 -10.86 10.49 -190.30 -2.00 -12.85 16 8 C 0.10 2.10 10.93 84.23 0.92 3.02 16 9 C -0.32 -7.05 6.48 23.88 0.15 -6.89 16 10 C 0.60 15.65 7.79 86.45 0.67 16.32 16 11 O -0.57 -18.80 16.97 -4.30 -0.07 -18.87 16 12 N -0.70 -16.36 5.39 -467.10 -2.52 -18.88 16 13 C 0.15 3.73 5.12 86.38 0.44 4.17 16 14 C -0.10 -2.88 3.10 -9.40 -0.03 -2.91 16 15 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 16 C -0.12 -4.18 6.42 31.78 0.20 -3.98 16 17 C 0.18 8.90 5.37 86.73 0.47 9.36 16 18 N -0.63 -31.87 3.39 -691.97 -2.35 -34.21 16 19 C -0.24 -13.48 10.28 84.03 0.86 -12.62 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 22 N -0.95 -57.63 10.31 21.65 0.22 -57.41 16 23 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.14 5.18 6.41 86.86 0.56 5.74 16 28 S 0.26 4.74 23.01 -56.49 -1.30 3.44 16 29 H 0.06 0.34 8.08 -2.39 -0.02 0.32 16 30 H 0.06 0.31 7.87 -2.39 -0.02 0.29 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.55 7.87 -2.39 -0.02 0.53 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.20 3.18 7.15 -2.91 -0.02 3.15 16 36 H 0.41 7.98 7.05 -92.71 -0.65 7.33 16 37 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 41 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16 42 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16 Total: -1.00 -76.44 385.95 0.11 -76.33 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.35 Total: 10.10 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 7.28 Total: 12.57 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.64 Total: -123.36 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.61 Total: -27.14 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.30 Total: 3.44 kcal Total: -76.44 0.11 -76.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028542968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.794 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds