Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99478 * 2 1 4 4 H 1.09003 * 109.46967 * 30.00236 * 3 2 1 5 5 C 1.52992 * 109.47448 * 269.99930 * 3 2 1 6 6 C 1.50696 * 109.46799 * 149.99699 * 3 2 1 7 7 N 1.29430 * 124.80571 * 45.02940 * 6 3 2 8 8 C 1.30949 * 117.36818 * 179.68609 * 7 6 3 9 9 C 1.35657 * 114.18661 * 0.52211 * 8 7 6 10 10 C 1.46687 * 126.13117 * 179.78716 * 9 8 7 11 11 O 1.21680 * 120.00484 * 184.41343 * 10 9 8 12 12 N 1.34777 * 119.99755 * 4.41855 * 10 9 8 13 13 C 1.46506 * 120.00138 * 354.16927 * 12 10 9 14 14 C 1.46498 * 120.00045 * 174.17625 * 12 10 9 15 15 H 1.08999 * 110.91700 * 8.94175 * 14 12 10 16 16 C 1.55152 * 111.00238 * 245.03675 * 14 12 10 17 17 C 1.54324 * 103.10282 * 277.51631 * 16 14 12 18 18 N 1.47018 * 107.27336 * 337.71860 * 17 16 14 19 19 C 1.36933 * 125.64922 * 178.90528 * 18 17 16 20 20 H 1.08000 * 119.99949 * 175.02327 * 19 18 17 21 21 C 1.38810 * 120.00014 * 355.02727 * 19 18 17 22 22 N 1.31615 * 120.00292 * 5.02107 * 21 19 18 23 23 Si 1.86806 * 119.99694 * 185.02686 * 21 19 18 24 24 H 1.48501 * 109.47053 * 95.00139 * 23 21 19 25 25 H 1.48506 * 109.46948 * 214.99612 * 23 21 19 26 26 H 1.48500 * 109.47227 * 334.99622 * 23 21 19 27 27 C 1.47430 * 108.70066 * 358.94120 * 18 17 16 28 28 S 1.70953 * 124.80553 * 225.00004 * 6 3 2 29 29 H 1.09009 * 109.46574 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47400 * 299.99696 * 1 2 3 31 31 H 1.09004 * 109.46984 * 60.00372 * 1 2 3 32 32 H 1.09001 * 109.47161 * 59.99886 * 5 3 2 33 33 H 1.08999 * 109.47313 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47287 * 300.00110 * 5 3 2 35 35 H 1.07998 * 122.90585 * 180.34520 * 8 7 6 36 36 H 1.08996 * 109.47518 * 184.58938 * 13 12 10 37 37 H 1.09006 * 109.46934 * 304.59343 * 13 12 10 38 38 H 1.08997 * 109.46898 * 64.58519 * 13 12 10 39 39 H 1.09000 * 110.72240 * 159.06294 * 16 14 12 40 40 H 1.09001 * 110.72321 * 35.96679 * 16 14 12 41 41 H 1.09000 * 109.88142 * 97.14050 * 17 16 14 42 42 H 1.09005 * 109.88246 * 218.14487 * 17 16 14 43 43 H 0.97001 * 120.00345 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36485 * 142.96877 * 27 18 17 45 45 H 1.09001 * 110.36185 * 265.28983 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 3.3385 1.2640 0.7105 7 7 4.2432 0.3557 0.5328 8 6 5.3499 0.4650 1.2242 9 6 5.3824 1.5367 2.0554 10 6 6.4862 1.9056 2.9482 11 8 6.3653 2.8485 3.7078 12 7 7.6345 1.2002 2.9272 13 6 7.7358 -0.0100 2.1077 14 6 8.7812 1.6436 3.7238 15 1 8.4998 2.4580 4.3913 16 6 9.9660 2.0566 2.8111 17 6 10.6411 0.7083 2.4826 18 7 10.2578 -0.2405 3.5382 19 6 10.6326 -1.5559 3.6034 20 1 10.3642 -2.1518 4.4632 21 6 11.3574 -2.1234 2.5645 22 7 11.7696 -1.3746 1.5637 23 14 11.7477 -3.9501 2.5868 24 1 10.7235 -4.6847 1.8016 25 1 13.0875 -4.1774 1.9879 26 1 11.7425 -4.4404 3.9886 27 6 9.4023 0.4587 4.5143 28 16 3.8640 2.4104 1.8646 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.2568 1.8015 -1.9563 33 1 2.6612 2.7671 -1.4424 34 1 2.8829 1.0777 -1.9563 35 1 6.1650 -0.2387 1.1421 36 1 8.7012 -0.4858 2.2802 37 1 6.9369 -0.7003 2.3788 38 1 7.6446 0.2556 1.0546 39 1 10.6537 2.7123 3.3450 40 1 9.6035 2.5378 1.9027 41 1 10.2943 0.3462 1.5148 42 1 11.7242 0.8304 2.4661 43 1 12.2765 -1.7711 0.8379 44 1 8.6190 -0.2067 4.8773 45 1 10.0011 0.8302 5.3458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033080612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = 31.448478 kcal Electronic energy + Delta-G solvation = -27657.064668 eV Core-core repulsion = 23804.271461 eV Total energy + Delta-G solvation = -3852.793206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50294 -39.46782 -38.23238 -37.44360 -34.48661 -32.90166 -32.16046 -30.08925 -29.13880 -27.78442 -27.22014 -26.75501 -25.73157 -24.40757 -22.88125 -21.95326 -20.19511 -20.09057 -19.08459 -18.07121 -17.20845 -16.93571 -16.44826 -15.84157 -15.74720 -15.38990 -15.29787 -14.72833 -14.66113 -14.24320 -14.02638 -13.81935 -13.49223 -13.09981 -12.90860 -12.76590 -12.62911 -12.20058 -12.08485 -12.01837 -11.85132 -11.76325 -11.41519 -11.12268 -11.00197 -10.86560 -10.82535 -10.50238 -10.18589 -10.16762 -10.01265 -9.79492 -9.72762 -9.52904 -9.42326 -9.02797 -8.72948 -8.30750 -6.92836 -5.82683 -3.17845 0.16045 0.99054 1.53297 2.45792 3.26102 3.30993 3.35159 3.41596 3.42854 3.49397 3.85679 4.39061 4.41434 4.66621 4.69611 4.91048 4.95203 5.01588 5.17323 5.26198 5.28703 5.35880 5.37438 5.39130 5.43142 5.59555 5.61800 5.81613 5.82678 5.87077 5.99193 6.12961 6.28055 6.42055 6.48283 6.57413 6.71034 6.73399 6.99375 7.46087 7.50695 7.58841 7.66647 7.73295 8.12471 8.28332 9.10302 9.69335 10.34118 11.27969 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.003005 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.884343 B = 9314.085448 C =10543.170438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.168 3.832 4 H 0.081 0.919 5 C -0.168 4.168 6 C 0.027 3.973 7 N -0.449 5.449 8 C 0.061 3.939 9 C -0.277 4.277 10 C 0.588 3.412 11 O -0.550 6.550 12 N -0.570 5.570 13 C 0.033 3.967 14 C 0.124 3.876 15 H 0.103 0.897 16 C -0.156 4.156 17 C 0.171 3.829 18 N -0.602 5.602 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.910 3.090 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.125 3.875 28 S 0.217 5.783 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.215 0.785 36 H 0.148 0.852 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.254 0.746 44 H 0.047 0.953 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.691 7.777 -3.994 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.106 3.894 4 H 0.099 0.901 5 C -0.227 4.227 6 C -0.249 4.249 7 N -0.163 5.163 8 C -0.095 4.095 9 C -0.401 4.401 10 C 0.375 3.625 11 O -0.431 6.431 12 N -0.300 5.300 13 C -0.109 4.109 14 C 0.019 3.981 15 H 0.120 0.880 16 C -0.195 4.195 17 C 0.046 3.954 18 N -0.329 5.329 19 C -0.364 4.364 20 H 0.097 0.903 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.206 1.206 27 C -0.002 4.002 28 S 0.474 5.526 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.230 0.770 36 H 0.166 0.834 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.071 8.442 -3.655 22.079 hybrid contribution 0.823 -1.464 -0.198 1.691 sum -19.249 6.978 -3.853 20.834 Atomic orbital electron populations 1.22890 0.80727 1.03317 1.00043 1.88114 1.19527 1.25608 1.94909 1.20451 0.87420 0.86269 0.95256 0.90137 1.22262 1.03275 1.02284 0.94863 1.27337 1.00472 0.96376 1.00668 1.66188 1.00777 1.25162 1.24149 1.24018 0.96579 0.97451 0.91495 1.25840 1.01670 1.03541 1.09093 1.16775 0.81339 0.82602 0.81832 1.90786 1.81696 1.29834 1.40771 1.47448 1.11305 1.25949 1.45258 1.22991 1.08414 0.86185 0.93351 1.22431 0.84463 0.97974 0.93187 0.87950 1.23283 0.96738 1.00315 0.99197 1.21277 0.97466 0.84229 0.92394 1.44659 1.56354 1.07598 1.24311 1.19048 1.30136 0.84143 1.03025 0.90294 1.24814 1.00175 0.98132 0.96864 1.69966 1.41398 1.33618 1.11431 0.86127 0.77498 0.84782 0.77530 1.21433 1.21752 1.20640 1.21989 0.93367 0.92391 0.92420 1.83828 1.08172 1.26338 1.34217 0.89128 0.93834 0.93743 0.91243 0.91132 0.90481 0.76981 0.83446 0.92131 0.92316 0.91170 0.91846 0.92724 0.94008 0.93573 0.93457 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.36 -4.00 10.32 -35.23 -0.36 -4.37 16 3 C 0.17 1.62 3.22 -27.89 -0.09 1.53 16 4 H 0.08 0.56 7.78 -51.93 -0.40 0.16 16 5 C -0.17 -1.35 9.51 37.15 0.35 -1.00 16 6 C 0.03 0.34 6.28 -13.29 -0.08 0.26 16 7 N -0.45 -6.69 10.49 -11.50 -0.12 -6.81 16 8 C 0.06 0.92 9.55 -18.85 -0.18 0.74 16 9 C -0.28 -4.30 6.44 -37.10 -0.24 -4.54 16 10 C 0.59 10.39 7.64 -12.85 -0.10 10.30 16 11 O -0.55 -10.89 16.37 5.21 0.09 -10.80 16 12 N -0.57 -10.02 2.91 -172.72 -0.50 -10.52 16 13 C 0.03 0.56 7.42 59.85 0.44 1.00 16 14 C 0.12 2.23 3.68 -65.53 -0.24 1.99 16 15 H 0.10 1.82 7.04 -51.93 -0.37 1.45 16 16 C -0.16 -2.85 6.53 -24.90 -0.16 -3.01 16 17 C 0.17 3.82 4.32 -3.07 -0.01 3.81 16 18 N -0.60 -13.98 1.89 -169.77 -0.32 -14.30 16 19 C -0.24 -6.05 9.86 -15.06 -0.15 -6.20 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 22 N -0.92 -25.08 10.34 55.49 0.57 -24.50 16 23 Si 0.91 21.02 29.56 -169.99 -5.02 16.00 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.13 2.47 6.42 -2.27 -0.01 2.46 16 28 S 0.22 2.71 23.01 -107.50 -2.47 0.24 16 29 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.18 16 32 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.21 3.06 3.56 -52.49 -0.19 2.87 16 36 H 0.15 3.06 3.60 -51.93 -0.19 2.88 16 37 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 38 H 0.06 0.93 6.57 -51.93 -0.34 0.59 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.32 6.29 -51.93 -0.33 1.00 16 42 H 0.04 1.05 7.65 -51.93 -0.40 0.66 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -30.75 369.27 -8.34 -39.10 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.28 Total: 1.98 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 0.52 Total: 8.43 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.37 Total: -56.13 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.28 Total: -15.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.47 Total: 0.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.75 -8.34 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033080612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.545 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds