Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99832 * 2 1 4 4 H 1.09000 * 109.47712 * 330.00120 * 3 2 1 5 5 C 1.53009 * 109.47177 * 90.00222 * 3 2 1 6 6 C 1.50703 * 109.47007 * 209.99964 * 3 2 1 7 7 N 1.29435 * 124.80254 * 314.69699 * 6 3 2 8 8 C 1.30941 * 117.35689 * 179.76725 * 7 6 3 9 9 C 1.35663 * 114.19575 * 0.52208 * 8 7 6 10 10 C 1.46687 * 126.12950 * 179.69404 * 9 8 7 11 11 O 1.21693 * 119.99392 * 162.29184 * 10 9 8 12 12 N 1.34773 * 120.00186 * 342.29489 * 10 9 8 13 13 C 1.46494 * 120.00126 * 2.33945 * 12 10 9 14 14 C 1.46501 * 119.99745 * 182.34739 * 12 10 9 15 15 H 1.08995 * 110.64394 * 1.68361 * 14 12 10 16 16 C 1.55156 * 110.71980 * 125.02142 * 14 12 10 17 17 C 1.54906 * 101.58234 * 153.86094 * 16 14 12 18 18 N 1.47423 * 104.83181 * 322.98962 * 17 16 14 19 19 C 1.36938 * 125.64716 * 204.16166 * 18 17 16 20 20 H 1.07995 * 119.99904 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00037 * 359.95805 * 19 18 17 22 22 N 1.31621 * 119.99871 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47147 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47330 * 120.00089 * 23 21 19 26 26 H 1.48503 * 109.46987 * 240.00059 * 23 21 19 27 27 C 1.47017 * 108.70352 * 24.13189 * 18 17 16 28 28 S 1.70955 * 124.80385 * 135.00579 * 6 3 2 29 29 H 1.08993 * 109.47008 * 60.00140 * 1 2 3 30 30 H 1.09010 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47070 * 299.99830 * 1 2 3 32 32 H 1.08994 * 109.47296 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.46281 * 300.00055 * 5 3 2 34 34 H 1.09000 * 109.46882 * 59.99391 * 5 3 2 35 35 H 1.08007 * 122.90293 * 180.24743 * 8 7 6 36 36 H 1.09000 * 109.47244 * 84.61929 * 13 12 10 37 37 H 1.08999 * 109.47195 * 204.62393 * 13 12 10 38 38 H 1.09005 * 109.47266 * 324.62611 * 13 12 10 39 39 H 1.09002 * 111.00274 * 271.93872 * 16 14 12 40 40 H 1.09004 * 111.00748 * 35.78866 * 16 14 12 41 41 H 1.09003 * 110.37196 * 204.14848 * 17 16 14 42 42 H 1.09009 * 110.46110 * 81.87624 * 17 16 14 43 43 H 0.96997 * 119.99547 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.87937 * 239.52123 * 27 18 17 45 45 H 1.08997 * 109.88549 * 118.35854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 3.3386 1.2639 -0.7104 7 7 4.2454 0.3582 -0.5290 8 6 5.3472 0.4611 -1.2290 9 6 5.3823 1.5362 -2.0557 10 6 6.4864 1.9053 -2.9481 11 8 6.2943 2.6832 -3.8640 12 7 7.7134 1.3828 -2.7538 13 6 7.9330 0.4072 -1.6833 14 6 8.8277 1.7907 -3.6131 15 1 8.5023 2.5402 -4.3345 16 6 10.0120 2.3201 -2.7620 17 6 11.2160 2.0377 -3.6947 18 7 10.8963 0.7541 -4.3455 19 6 11.8070 -0.1214 -4.8740 20 1 11.4705 -1.0401 -5.3312 21 6 13.1628 0.1721 -4.8224 22 7 13.5730 1.2917 -4.2650 23 14 14.4052 -1.0225 -5.5428 24 1 13.6931 -2.1981 -6.1049 25 1 15.1742 -0.3478 -6.6191 26 1 15.3359 -1.4716 -4.4763 27 6 9.4379 0.5693 -4.3324 28 16 3.8643 2.4103 -1.8645 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.6614 2.7669 1.4426 33 1 1.2568 1.8013 1.9563 34 1 2.8829 1.0774 1.9564 35 1 6.1597 -0.2462 -1.1516 36 1 7.6732 -0.5892 -2.0409 37 1 8.9813 0.4245 -1.3854 38 1 7.3077 0.6603 -0.8271 39 1 9.9084 3.3881 -2.5701 40 1 10.1019 1.7640 -1.8288 41 1 12.1340 1.9500 -3.1134 42 1 11.3139 2.8270 -4.4402 43 1 14.5204 1.4966 -4.2286 44 1 9.1847 -0.3434 -3.7928 45 1 9.0619 0.5147 -5.3541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033080615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = 26.082087 kcal Electronic energy + Delta-G solvation = -26974.370452 eV Core-core repulsion = 23121.344541 eV Total energy + Delta-G solvation = -3853.025910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67299 -39.56268 -38.34045 -37.33595 -35.00618 -33.00768 -32.15963 -30.23992 -29.08520 -27.66632 -27.38492 -26.96686 -25.94476 -24.48404 -23.14626 -21.87293 -20.28831 -20.05319 -19.26066 -18.27510 -17.34847 -17.00822 -16.57970 -16.06663 -15.91050 -15.64160 -15.23371 -14.87455 -14.68440 -14.37727 -14.14006 -13.84862 -13.64443 -13.20930 -13.10595 -13.00522 -12.76432 -12.48341 -12.25922 -12.15179 -11.87254 -11.63678 -11.52966 -11.29745 -11.09332 -10.91628 -10.84852 -10.58438 -10.39524 -10.12148 -10.07913 -9.86580 -9.75525 -9.60571 -9.59086 -9.18653 -8.69554 -8.48536 -6.88590 -5.69142 -3.11488 -0.01012 0.81679 1.35766 2.26730 3.05175 3.07026 3.36522 3.38185 3.44039 3.46357 3.68501 4.27324 4.43450 4.47465 4.57458 4.71333 4.85303 4.92448 4.95157 5.05367 5.15267 5.26064 5.27673 5.28198 5.38113 5.47659 5.51857 5.64461 5.66058 5.69845 5.78321 5.85473 6.14363 6.30789 6.48586 6.51463 6.61859 6.64492 6.88366 7.37673 7.40196 7.46999 7.59182 7.80017 8.09942 8.30946 9.17684 9.78084 10.41766 11.34773 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002177 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.384036 B =12859.390017 C =13176.452155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.028 3.972 7 N -0.449 5.449 8 C 0.067 3.933 9 C -0.279 4.279 10 C 0.590 3.410 11 O -0.538 6.538 12 N -0.583 5.583 13 C 0.053 3.947 14 C 0.127 3.873 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.130 3.870 28 S 0.230 5.770 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.204 0.796 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.016 0.984 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.954 1.886 12.415 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.247 4.247 7 N -0.163 5.163 8 C -0.090 4.090 9 C -0.404 4.404 10 C 0.376 3.624 11 O -0.417 6.417 12 N -0.314 5.314 13 C -0.090 4.090 14 C 0.024 3.976 15 H 0.124 0.876 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.003 3.997 28 S 0.488 5.512 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.220 0.780 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -25.299 2.613 11.827 28.049 hybrid contribution 1.185 -1.129 -0.363 1.676 sum -24.114 1.484 11.464 26.741 Atomic orbital electron populations 1.22897 0.80587 1.03379 1.00134 1.88099 1.19647 1.25565 1.94919 1.20464 0.87354 0.86362 0.95303 0.90026 1.22266 1.03358 1.02269 0.94792 1.27337 1.00406 0.96567 1.00432 1.66141 1.00711 1.25217 1.24263 1.23356 0.96392 0.97397 0.91894 1.25847 1.01848 1.03727 1.08946 1.16724 0.81419 0.80998 0.83285 1.90837 1.82894 1.35960 1.31983 1.47609 1.08122 1.42522 1.33135 1.22463 1.04628 0.91910 0.89981 1.22368 0.84613 0.98024 0.92585 0.87569 1.23426 0.96545 0.99766 0.99463 1.21955 0.95579 0.86428 0.93269 1.44442 0.99031 1.20766 1.68639 1.19115 0.86341 0.99089 1.30416 0.90369 1.24802 0.96897 0.97683 1.01296 1.69786 1.13957 1.23904 1.49418 0.85978 0.81273 0.79871 0.78247 1.20511 1.21724 1.21715 1.21519 0.86508 0.94569 0.97126 1.83957 1.07637 1.25832 1.33775 0.93766 0.89081 0.93679 0.91093 0.91169 0.90511 0.77983 0.91613 0.89148 0.90096 0.91887 0.91481 0.87159 0.96591 0.93701 0.95347 0.95539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.46 10.32 -35.23 -0.36 -3.82 16 3 C 0.17 1.35 3.23 -27.88 -0.09 1.26 16 4 H 0.08 0.46 7.78 -51.93 -0.40 0.05 16 5 C -0.17 -1.09 9.51 37.16 0.35 -0.74 16 6 C 0.03 0.30 6.28 -13.29 -0.08 0.21 16 7 N -0.45 -5.56 10.49 -11.50 -0.12 -5.69 16 8 C 0.07 0.80 9.29 -18.85 -0.18 0.62 16 9 C -0.28 -3.71 6.24 -37.09 -0.23 -3.94 16 10 C 0.59 9.52 7.65 -12.85 -0.10 9.42 16 11 O -0.54 -10.39 16.39 5.20 0.09 -10.30 16 12 N -0.58 -9.07 2.88 -173.38 -0.50 -9.57 16 13 C 0.05 0.64 7.52 59.84 0.45 1.09 16 14 C 0.13 2.35 3.36 -66.10 -0.22 2.12 16 15 H 0.11 2.11 6.99 -51.93 -0.36 1.75 16 16 C -0.15 -2.85 6.59 -24.58 -0.16 -3.02 16 17 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 18 N -0.60 -15.25 3.39 -170.07 -0.58 -15.83 16 19 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 23 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.13 2.74 6.88 -3.07 -0.02 2.72 16 28 S 0.23 2.50 23.06 -107.50 -2.48 0.02 16 29 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 30 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.20 2.04 4.37 -52.48 -0.23 1.81 16 36 H 0.07 0.72 7.39 -51.93 -0.38 0.33 16 37 H 0.09 1.16 6.13 -51.93 -0.32 0.84 16 38 H 0.08 0.81 5.05 -51.93 -0.26 0.55 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.18 6.14 -51.93 -0.32 0.86 16 41 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 42 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -33.58 372.12 -8.53 -42.11 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.27 Total: -1.42 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 0.55 Total: 7.96 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.64 Total: -57.03 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.28 Total: -14.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.48 Total: 0.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.58 -8.53 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033080615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.192 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds