Wall clock time and date at job start Sat Apr 11 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00002 * 2 1 4 4 H 1.09002 * 109.47438 * 30.00413 * 3 2 1 5 5 C 1.53004 * 109.47292 * 269.99984 * 3 2 1 6 6 C 1.50699 * 109.47193 * 150.00185 * 3 2 1 7 7 N 1.28649 * 124.72039 * 224.72018 * 6 3 2 8 8 C 1.33566 * 115.76528 * 179.82436 * 7 6 3 9 9 C 1.47263 * 123.13994 * 180.21718 * 8 7 6 10 10 O 1.21640 * 119.99975 * 173.44971 * 9 8 7 11 11 N 1.34769 * 120.00167 * 353.45229 * 9 8 7 12 12 C 1.46504 * 120.00218 * 2.76675 * 11 9 8 13 13 C 1.46503 * 120.00188 * 182.76620 * 11 9 8 14 14 H 1.09005 * 110.88547 * 356.11879 * 13 11 9 15 15 C 1.55153 * 111.00882 * 119.99837 * 13 11 9 16 16 C 1.54317 * 102.94647 * 153.57919 * 15 13 11 17 17 N 1.47023 * 107.26932 * 337.80534 * 16 15 13 18 18 C 1.36938 * 125.65055 * 178.89192 * 17 16 15 19 19 H 1.08001 * 120.00523 * 180.02562 * 18 17 16 20 20 C 1.38816 * 119.99589 * 0.03140 * 18 17 16 21 21 N 1.31615 * 120.00317 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99635 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47155 * 60.00256 * 22 20 18 24 24 H 1.48502 * 109.47110 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47441 * 300.00212 * 22 20 18 26 26 C 1.47426 * 108.70329 * 358.94492 * 17 16 15 27 27 C 1.35208 * 113.71694 * 0.45959 * 8 7 6 28 28 S 1.70776 * 124.72088 * 45.02517 * 6 3 2 29 29 H 1.08998 * 109.47178 * 59.99862 * 1 2 3 30 30 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46521 * 299.99802 * 1 2 3 32 32 H 1.09007 * 109.46932 * 60.00114 * 5 3 2 33 33 H 1.08991 * 109.47484 * 300.00118 * 5 3 2 34 34 H 1.08999 * 109.47142 * 179.97438 * 5 3 2 35 35 H 1.08991 * 109.47130 * 84.00180 * 12 11 9 36 36 H 1.09002 * 109.47169 * 204.00727 * 12 11 9 37 37 H 1.09007 * 109.46634 * 323.99964 * 12 11 9 38 38 H 1.09002 * 110.72067 * 271.94594 * 15 13 11 39 39 H 1.09007 * 110.71947 * 35.20986 * 15 13 11 40 40 H 1.08994 * 109.88657 * 97.22736 * 16 15 13 41 41 H 1.09003 * 109.88471 * 218.24309 * 16 15 13 42 42 H 0.96994 * 120.00143 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.36313 * 265.28652 * 26 17 16 44 44 H 1.09003 * 110.36906 * 142.96505 * 26 17 16 45 45 H 1.08003 * 125.58668 * 179.73469 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 3.7347 2.1303 1.5749 8 6 4.9453 1.9176 2.0975 9 6 5.5552 2.8038 3.1031 10 8 6.6076 2.4940 3.6286 11 7 4.9473 3.9581 3.4414 12 6 3.6501 4.3024 2.8538 13 6 5.5835 4.8685 4.3967 14 1 6.5043 4.4376 4.7900 15 6 5.8493 6.2544 3.7518 16 6 5.8439 7.2073 4.9656 17 7 5.0907 6.5424 6.0391 18 6 4.8731 7.0483 7.2928 19 1 4.3047 6.4793 8.0136 20 6 5.3831 8.2926 7.6373 21 7 6.0762 8.9859 6.7591 22 14 5.0856 8.9829 9.3474 23 1 5.6659 8.0646 10.3598 24 1 5.7289 10.3165 9.4616 25 1 3.6251 9.1168 9.5801 26 6 4.6097 5.2403 5.5425 27 6 5.5608 0.8155 1.6130 28 16 4.5308 0.0641 0.4743 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.2568 1.8015 -1.9564 33 1 2.8829 1.0776 -1.9564 34 1 2.6606 2.7673 -1.4425 35 1 2.8545 3.8205 3.4219 36 1 3.5137 5.3835 2.8827 37 1 3.6173 3.9596 1.8196 38 1 6.8192 6.2688 3.2546 39 1 5.0532 6.5141 3.0539 40 1 6.8661 7.3971 5.2926 41 1 5.3602 8.1466 4.6974 42 1 6.4328 9.8551 7.0000 43 1 3.5926 5.3320 5.1613 44 1 4.6529 4.4927 6.3347 45 1 6.5424 0.4671 1.8984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033082023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:25 Heat of formation + Delta-G solvation = 15.326690 kcal Electronic energy + Delta-G solvation = -27317.079940 eV Core-core repulsion = 23463.587641 eV Total energy + Delta-G solvation = -3853.492299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81192 -39.22160 -38.37884 -37.19236 -34.73097 -32.92256 -32.04746 -29.96604 -29.22853 -27.74140 -27.32668 -26.58256 -25.85740 -24.53410 -23.48154 -21.35216 -20.09573 -20.05574 -19.32538 -18.36265 -16.98863 -16.83646 -16.74376 -16.15251 -15.93698 -15.79999 -15.38425 -14.63152 -14.34701 -14.18541 -14.02923 -13.72899 -13.40620 -13.18359 -12.85733 -12.84693 -12.76303 -12.41383 -12.35152 -12.13538 -12.09773 -11.86036 -11.67749 -11.47033 -10.92784 -10.80409 -10.73084 -10.37763 -10.27587 -10.11811 -9.96588 -9.88328 -9.76040 -9.67884 -9.56843 -9.16349 -8.59066 -8.25108 -6.81607 -5.68701 -3.02780 0.27915 0.97938 1.41374 1.78604 2.89259 3.24437 3.37572 3.43426 3.47280 3.48755 3.91811 4.38615 4.53294 4.58432 4.63998 4.85038 4.91472 4.94411 5.06098 5.17578 5.25569 5.26085 5.39986 5.42830 5.49928 5.55817 5.64121 5.70073 5.72974 5.84544 5.95569 6.23420 6.27210 6.35459 6.53541 6.54255 6.64210 6.75243 6.97700 7.19107 7.56878 7.61454 7.65002 7.84478 8.25761 8.30924 9.23823 9.83689 10.49184 11.42895 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.002415 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.502123 B =11591.674974 C =12180.919592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.164 3.836 4 H 0.095 0.905 5 C -0.170 4.170 6 C 0.011 3.989 7 N -0.426 5.426 8 C 0.018 3.982 9 C 0.587 3.413 10 O -0.539 6.539 11 N -0.581 5.581 12 C 0.075 3.925 13 C 0.121 3.879 14 H 0.107 0.893 15 C -0.152 4.152 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.133 3.867 27 C -0.231 4.231 28 S 0.245 5.755 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.041 0.959 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -18.699 -20.387 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.268 4.268 7 N -0.143 5.143 8 C -0.117 4.117 9 C 0.372 3.628 10 O -0.417 6.417 11 N -0.311 5.311 12 C -0.068 4.068 13 C 0.018 3.982 14 H 0.125 0.875 15 C -0.191 4.191 16 C 0.055 3.945 17 N -0.330 5.330 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.005 3.995 27 C -0.373 4.373 28 S 0.503 5.497 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.086 -19.232 -20.460 29.513 hybrid contribution -0.005 1.302 1.637 2.092 sum -9.090 -17.930 -18.823 27.540 Atomic orbital electron populations 1.22861 0.79710 1.03319 1.00551 1.87897 1.20707 1.26370 1.95119 1.20288 0.88348 0.86143 0.94967 0.88723 1.22307 1.03379 1.02552 0.94598 1.26932 1.01946 0.96724 1.01168 1.67275 1.12975 1.25639 1.08432 1.20452 0.91323 0.97665 1.02222 1.17094 0.83956 0.80723 0.81032 1.90809 1.22724 1.73768 1.54405 1.47645 1.21217 1.19135 1.43054 1.22224 0.83378 1.00948 1.00257 1.22530 0.97608 0.88914 0.89188 0.87533 1.23254 1.00703 0.95329 0.99853 1.21136 0.97143 0.92409 0.83793 1.44377 1.62246 1.15230 1.11112 1.19013 1.28838 1.00086 0.87694 0.90439 1.24809 1.00159 0.97184 0.98256 1.69945 1.40103 1.13605 1.33354 0.86172 0.77636 0.78116 0.83671 1.21132 1.21591 1.21184 1.21736 0.94752 0.89269 0.93707 1.26741 1.07289 0.99962 1.03314 1.82864 1.05516 1.26494 1.34869 0.93525 0.89093 0.93397 0.90966 0.91302 0.90569 0.92843 0.91332 0.88407 0.91903 0.92014 0.93301 0.93654 0.93670 0.95872 0.94091 0.79240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -2.94 10.17 -35.23 -0.36 -3.30 16 3 C 0.16 1.23 3.23 -27.88 -0.09 1.14 16 4 H 0.09 0.67 7.79 -51.93 -0.40 0.26 16 5 C -0.17 -0.96 9.51 37.16 0.35 -0.61 16 6 C 0.01 0.11 6.30 -13.61 -0.09 0.02 16 7 N -0.43 -5.25 6.75 -8.51 -0.06 -5.31 16 8 C 0.02 0.26 6.49 -84.52 -0.55 -0.29 16 9 C 0.59 10.22 7.65 -12.60 -0.10 10.12 16 10 O -0.54 -10.89 16.11 5.24 0.08 -10.80 16 11 N -0.58 -9.99 2.91 -172.80 -0.50 -10.49 16 12 C 0.07 1.07 8.05 59.85 0.48 1.56 16 13 C 0.12 2.41 3.44 -65.78 -0.23 2.19 16 14 H 0.11 2.33 7.01 -51.93 -0.36 1.96 16 15 C -0.15 -3.03 6.49 -24.90 -0.16 -3.19 16 16 C 0.18 4.50 5.37 -3.07 -0.02 4.48 16 17 N -0.60 -15.93 3.39 -170.07 -0.58 -16.51 16 18 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.51 10.31 55.49 0.57 -26.94 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.13 2.93 6.79 -2.53 -0.02 2.91 16 27 C -0.23 -2.65 10.62 29.65 0.31 -2.33 16 28 S 0.25 2.12 22.74 -107.50 -2.44 -0.32 16 29 H 0.05 0.16 7.87 -51.93 -0.41 -0.25 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.07 0.30 7.87 -51.92 -0.41 -0.10 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.99 6.36 -51.93 -0.33 0.66 16 37 H 0.10 1.28 5.26 -51.93 -0.27 1.00 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.13 6.47 -51.92 -0.34 0.79 16 40 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 41 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.02 0.50 6.94 -51.93 -0.36 0.14 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.19 1.99 8.04 -52.48 -0.42 1.57 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -33.76 375.38 -8.48 -42.24 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.58 Total: -1.95 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 0.75 Total: 10.25 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.57 Total: -59.25 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.27 Total: -14.10 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.44 Total: -0.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.76 -8.48 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033082023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.567 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds