Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00140 * 2 1 4 4 H 1.08996 * 109.47087 * 330.00427 * 3 2 1 5 5 C 1.53006 * 109.47016 * 89.99764 * 3 2 1 6 6 C 1.50691 * 109.47609 * 209.99911 * 3 2 1 7 7 N 1.28647 * 124.72498 * 135.28489 * 6 3 2 8 8 C 1.33554 * 115.76912 * 180.15476 * 7 6 3 9 9 C 1.47274 * 123.14125 * 179.82839 * 8 7 6 10 10 O 1.21629 * 119.99929 * 179.73095 * 9 8 7 11 11 N 1.34777 * 119.99688 * 359.72946 * 9 8 7 12 12 C 1.46504 * 119.99427 * 180.02562 * 11 9 8 13 13 C 1.52997 * 110.64182 * 300.69873 * 12 11 9 14 14 C 1.55163 * 110.86719 * 177.45118 * 12 11 9 15 15 C 1.54904 * 101.58073 * 277.06821 * 14 12 11 16 16 N 1.47421 * 104.83620 * 322.98869 * 15 14 12 17 17 C 1.36936 * 125.65035 * 204.09628 * 16 15 14 18 18 H 1.08003 * 119.99872 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99824 * 0.04033 * 17 16 15 20 20 N 1.31611 * 120.00200 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99647 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47242 * 90.00411 * 21 19 17 23 23 H 1.48497 * 109.47394 * 210.00240 * 21 19 17 24 24 H 1.48505 * 109.47356 * 330.00480 * 21 19 17 25 25 C 1.47025 * 108.70178 * 24.13268 * 16 15 14 26 26 C 1.35206 * 113.71682 * 359.56002 * 8 7 6 27 27 S 1.70774 * 124.71853 * 314.97479 * 6 3 2 28 28 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.08988 * 109.47300 * 299.99935 * 1 2 3 30 30 H 1.09005 * 109.46784 * 60.00229 * 1 2 3 31 31 H 1.09000 * 109.47231 * 300.00641 * 5 3 2 32 32 H 1.09001 * 109.46786 * 59.99933 * 5 3 2 33 33 H 1.08995 * 109.47158 * 180.02562 * 5 3 2 34 34 H 0.96991 * 120.00318 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47153 * 181.69032 * 13 12 11 36 36 H 1.09001 * 109.46832 * 61.69223 * 13 12 11 37 37 H 1.09004 * 109.47261 * 301.69204 * 13 12 11 38 38 H 1.08995 * 111.00334 * 35.14471 * 14 12 11 39 39 H 1.08999 * 111.00142 * 158.99183 * 14 12 11 40 40 H 1.09007 * 110.36208 * 204.15318 * 15 14 12 41 41 H 1.08996 * 110.45982 * 81.88497 * 15 14 12 42 42 H 0.97004 * 119.99847 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.88484 * 239.52534 * 25 16 15 44 44 H 1.08998 * 110.01061 * 118.42466 * 25 16 15 45 45 H 1.08006 * 125.58734 * 180.23438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2176 1.7714 1.4426 6 6 3.3386 1.2640 -0.7103 7 7 3.7347 2.1305 -1.5748 8 6 4.9455 1.9181 -2.0970 9 6 5.5558 2.8050 -3.1019 10 8 6.6653 2.5596 -3.5358 11 7 4.8849 3.8885 -3.5406 12 6 5.4919 4.7704 -4.5406 13 6 6.8118 5.3453 -4.0227 14 6 4.5158 5.9089 -4.9387 15 6 3.6343 5.2056 -6.0007 16 7 4.5600 4.3258 -6.7371 17 6 4.3799 3.8689 -8.0154 18 1 5.1198 3.2253 -8.4680 19 6 3.2467 4.2332 -8.7294 20 7 2.3456 5.0181 -8.1781 21 14 3.0008 3.6093 -10.4729 22 1 2.2618 2.3217 -10.4383 23 1 2.2217 4.6063 -11.2502 24 1 4.3233 3.4038 -11.1163 25 6 5.7082 4.0195 -5.8715 26 6 5.5608 0.8159 -1.6127 27 16 4.5308 0.0643 -0.4742 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.2568 1.8014 1.9564 32 1 2.8829 1.0774 1.9564 33 1 2.6606 2.7673 1.4426 34 1 4.0001 4.0839 -3.1948 35 1 7.2313 6.0209 -4.7682 36 1 7.5128 4.5323 -3.8336 37 1 6.6315 5.8923 -3.0972 38 1 3.9187 6.2281 -4.0846 39 1 5.0543 6.7510 -5.3735 40 1 3.1928 5.9404 -6.6741 41 1 2.8539 4.6168 -5.5187 42 1 1.5538 5.2730 -8.6772 43 1 6.6298 4.3601 -6.3436 44 1 5.7608 2.9465 -5.6873 45 1 6.5425 0.4674 -1.8982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046319399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -3.685608 kcal Electronic energy + Delta-G solvation = -27597.413529 eV Core-core repulsion = 23743.096794 eV Total energy + Delta-G solvation = -3854.316735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59310 -39.31315 -38.37156 -37.07176 -33.97235 -32.82572 -31.80204 -30.08278 -29.69716 -28.61985 -27.23078 -25.96340 -25.59278 -24.07153 -23.31812 -21.40584 -20.34539 -19.91363 -19.22095 -18.52805 -16.98883 -16.69585 -16.40847 -16.26652 -15.77381 -15.41958 -15.09599 -14.62820 -14.42840 -14.06240 -13.77652 -13.60564 -13.30374 -13.12886 -13.07131 -12.76567 -12.63450 -12.19069 -12.08313 -11.99324 -11.93727 -11.68419 -11.50836 -11.43483 -10.90124 -10.83056 -10.39388 -10.30469 -10.24367 -10.05261 -10.00616 -9.96210 -9.76148 -9.63866 -9.36034 -9.05345 -8.61064 -8.54907 -6.76263 -5.60456 -3.00697 0.40111 1.09075 1.52596 1.92486 3.02265 3.43555 3.48284 3.50356 3.51470 3.57866 4.05199 4.51521 4.54374 4.69808 4.77497 4.95733 5.06886 5.07849 5.16017 5.23752 5.28464 5.35797 5.37406 5.43376 5.54765 5.61589 5.70932 5.75238 5.79387 6.08770 6.21621 6.27859 6.41115 6.50236 6.55856 6.65193 6.75123 6.86544 7.15458 7.29815 7.52193 7.68027 7.85734 7.94295 8.39839 8.51621 9.27868 9.88635 10.53908 11.43855 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.003159 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.561131 B = 8861.872674 C = 9931.940699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.168 4.168 6 C 0.017 3.983 7 N -0.432 5.432 8 C 0.017 3.983 9 C 0.594 3.406 10 O -0.533 6.533 11 N -0.687 5.687 12 C 0.157 3.843 13 C -0.150 4.150 14 C -0.145 4.145 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.217 4.217 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.137 3.863 26 C -0.232 4.232 27 S 0.241 5.759 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.011 0.989 42 H 0.251 0.749 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -6.437 22.686 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.227 4.227 6 C -0.262 4.262 7 N -0.149 5.149 8 C -0.118 4.118 9 C 0.377 3.623 10 O -0.410 6.410 11 N -0.337 5.337 12 C 0.071 3.929 13 C -0.208 4.208 14 C -0.184 4.184 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.345 4.345 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.574 5.574 21 Si 0.744 3.256 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.011 3.989 26 C -0.374 4.374 27 S 0.498 5.502 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.125 -7.168 22.648 23.755 hybrid contribution -0.478 0.445 -1.464 1.603 sum -0.603 -6.724 21.183 22.233 Atomic orbital electron populations 1.22863 0.79712 1.03322 1.00567 1.87893 1.20723 1.26345 1.95114 1.20290 0.88425 0.86193 0.94909 0.88701 1.22294 1.03299 1.02458 0.94633 1.26699 1.01978 0.96722 1.00828 1.66836 1.12775 1.27295 1.08012 1.20527 0.91167 0.97923 1.02203 1.16961 0.84796 0.80304 0.80243 1.90772 1.19310 1.72803 1.58158 1.45810 1.20708 1.25236 1.41935 1.21415 0.93309 0.90332 0.87798 1.22050 0.97012 1.01202 1.00567 1.23348 0.98241 0.96688 1.00160 1.21936 0.90015 0.93858 0.91417 1.44501 1.20030 1.56611 1.11851 1.19099 1.03992 1.23654 0.87774 0.90565 1.24751 0.96885 1.00432 0.98716 1.69779 1.11584 1.39844 1.36157 0.86074 0.77628 0.77819 0.84029 1.21757 1.21677 1.20698 1.21594 0.91606 0.97254 0.88460 1.26736 1.07239 1.00048 1.03378 1.82808 1.05595 1.26685 1.35117 0.89088 0.93583 0.93305 0.91009 0.91331 0.90656 0.75843 0.91652 0.90838 0.93138 0.91846 0.90416 0.87417 0.97128 0.93857 0.95088 0.95061 0.79224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.64 10.17 -35.23 -0.36 -3.99 16 3 C 0.16 1.53 3.23 -27.88 -0.09 1.44 16 4 H 0.10 0.88 7.79 -51.93 -0.40 0.48 16 5 C -0.17 -1.17 9.51 37.16 0.35 -0.81 16 6 C 0.02 0.20 6.30 -13.62 -0.09 0.12 16 7 N -0.43 -6.28 10.12 -8.51 -0.09 -6.36 16 8 C 0.02 0.27 6.70 -84.52 -0.57 -0.30 16 9 C 0.59 10.82 7.01 -12.59 -0.09 10.73 16 10 O -0.53 -10.75 13.68 5.25 0.07 -10.68 16 11 N -0.69 -12.36 5.15 -47.01 -0.24 -12.61 16 12 C 0.16 3.00 0.81 -129.98 -0.11 2.89 16 13 C -0.15 -2.48 8.36 37.16 0.31 -2.17 16 14 C -0.15 -2.77 6.09 -24.58 -0.15 -2.92 16 15 C 0.15 3.76 5.87 -2.53 -0.01 3.74 16 16 N -0.60 -16.21 3.39 -170.08 -0.58 -16.78 16 17 C -0.22 -6.31 10.27 -15.06 -0.15 -6.47 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 19 C -0.01 -0.37 5.49 -17.44 -0.10 -0.47 16 20 N -0.92 -27.34 10.09 55.49 0.56 -26.78 16 21 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.14 3.21 6.16 -3.06 -0.02 3.19 16 26 C -0.23 -3.00 10.62 29.65 0.31 -2.68 16 27 S 0.24 2.46 22.74 -107.50 -2.44 0.02 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.23 7.87 -51.94 -0.41 -0.18 16 30 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.41 6.90 8.01 -40.82 -0.33 6.57 16 35 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 36 H 0.07 1.30 6.26 -51.93 -0.33 0.97 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 40 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 44 H 0.03 0.79 6.68 -51.93 -0.35 0.45 16 45 H 0.19 2.22 8.03 -52.48 -0.42 1.80 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -33.72 378.81 -8.38 -42.10 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.69 Total: 4.09 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.70 Total: 7.60 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.35 Total: -62.54 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.29 Total: -14.67 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.44 Total: 0.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.72 -8.38 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046319399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.410 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds