Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 6 6 C 1.50704 * 109.47175 * 149.99736 * 3 2 1 7 7 N 1.28642 * 124.71954 * 224.99936 * 6 3 2 8 8 C 1.33564 * 115.76612 * 179.97438 * 7 6 3 9 9 C 1.47268 * 123.14186 * 179.97438 * 8 7 6 10 10 O 1.21626 * 120.00115 * 179.97438 * 9 8 7 11 11 N 1.34785 * 119.99925 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99910 * 180.02562 * 11 9 8 13 13 C 1.53002 * 110.88766 * 62.42413 * 12 11 9 14 14 C 1.55150 * 111.00237 * 186.35041 * 12 11 9 15 15 C 1.54319 * 102.94489 * 82.57337 * 14 12 11 16 16 N 1.47022 * 107.27333 * 22.18669 * 15 14 12 17 17 C 1.36933 * 125.65002 * 181.02058 * 16 15 14 18 18 H 1.08006 * 119.99860 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00328 * 0.05074 * 17 16 15 20 20 N 1.31618 * 119.99693 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47501 * 60.00320 * 21 19 17 23 23 H 1.48500 * 109.46854 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47401 * 299.99593 * 21 19 17 25 25 C 1.47422 * 108.70030 * 1.06632 * 16 15 14 26 26 C 1.35203 * 113.71521 * 359.97438 * 8 7 6 27 27 S 1.70772 * 124.71978 * 44.69458 * 6 3 2 28 28 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 31 31 H 1.08997 * 109.47039 * 60.00317 * 5 3 2 32 32 H 1.09001 * 109.47285 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47263 * 299.99960 * 5 3 2 34 34 H 0.96993 * 119.99784 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.47031 * 60.70089 * 13 12 11 36 36 H 1.08997 * 109.46864 * 180.70112 * 13 12 11 37 37 H 1.08998 * 109.47331 * 300.70423 * 13 12 11 38 38 H 1.09004 * 110.72184 * 200.93286 * 14 12 11 39 39 H 1.09001 * 110.72546 * 324.20562 * 14 12 11 40 40 H 1.09004 * 109.87964 * 262.77579 * 15 14 12 41 41 H 1.09002 * 109.88535 * 141.60730 * 15 14 12 42 42 H 0.96994 * 119.99814 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36703 * 217.03019 * 25 16 15 44 44 H 1.09005 * 110.46554 * 94.75373 * 25 16 15 45 45 H 1.08006 * 125.58203 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 7 3.7325 2.1275 1.5788 8 6 4.9448 1.9171 2.0984 9 6 5.5547 2.8036 3.1038 10 8 6.6634 2.5572 3.5392 11 7 4.8844 3.8879 3.5415 12 6 5.4914 4.7701 4.5413 13 6 6.7729 5.4073 4.0003 14 6 4.4854 5.8540 5.0105 15 6 3.6558 5.1152 6.0817 16 7 4.4680 3.9877 6.5619 17 6 4.0836 3.0715 7.5042 18 1 4.7564 2.2765 7.7905 19 6 2.8291 3.1642 8.0913 20 7 2.0093 4.1330 7.7425 21 14 2.3046 1.9140 9.3763 22 1 3.2432 1.9623 10.5261 23 1 0.9319 2.2321 9.8449 24 1 2.3219 0.5541 8.7799 25 6 5.7651 4.0074 5.8616 26 6 5.5596 0.8142 1.6150 27 16 4.5275 0.0597 0.4804 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.2570 1.8013 -1.9563 32 1 2.6615 2.7668 -1.4425 33 1 2.8831 1.0773 -1.9563 34 1 4.0005 4.0845 3.1940 35 1 6.5380 6.0033 3.1184 36 1 7.2112 6.0479 4.7656 37 1 7.4824 4.6248 3.7315 38 1 5.0100 6.7038 5.4474 39 1 3.8507 6.1746 4.1844 40 1 2.7296 4.7444 5.6426 41 1 3.4326 5.7898 6.9082 42 1 1.1326 4.1976 8.1525 43 1 6.0978 2.9910 5.6507 44 1 6.5113 4.5343 6.4564 45 1 6.5409 0.4654 1.9013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046319401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -5.105282 kcal Electronic energy + Delta-G solvation = -27848.775697 eV Core-core repulsion = 23994.397401 eV Total energy + Delta-G solvation = -3854.378296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51241 -39.24634 -38.31388 -37.01637 -33.88921 -32.76259 -31.78454 -30.05997 -29.66571 -28.61471 -27.17502 -25.90301 -25.56612 -24.02829 -23.31596 -21.36512 -20.29707 -19.81061 -19.22278 -18.45041 -16.96246 -16.63619 -16.34680 -16.17313 -15.71233 -15.33806 -15.03740 -14.57266 -14.38886 -14.04002 -13.79825 -13.59161 -13.24279 -13.16703 -13.02747 -12.78012 -12.61212 -12.04441 -11.97165 -11.94471 -11.84877 -11.73113 -11.59910 -11.37814 -10.85738 -10.82379 -10.40703 -10.30424 -10.18260 -10.06506 -9.95214 -9.92543 -9.69215 -9.59480 -9.39391 -8.97726 -8.57103 -8.44747 -6.73307 -5.64492 -2.95965 0.47393 1.16214 1.59546 2.00713 3.08746 3.45136 3.48621 3.50345 3.57371 3.67943 4.11404 4.56278 4.58396 4.75590 4.83674 5.00560 5.10102 5.12679 5.20508 5.26550 5.33558 5.40467 5.42569 5.43772 5.54113 5.67357 5.75367 5.78784 5.82415 6.06658 6.19743 6.20484 6.39691 6.45521 6.59370 6.70999 6.73649 6.87528 7.17526 7.36614 7.60820 7.64039 7.86295 8.00563 8.32885 8.59374 9.29990 9.90156 10.56562 11.47644 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.003781 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.396843 B = 7403.799234 C = 8781.517629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.168 4.168 6 C 0.017 3.983 7 N -0.431 5.431 8 C 0.019 3.981 9 C 0.596 3.404 10 O -0.536 6.536 11 N -0.681 5.681 12 C 0.154 3.846 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.287 1.287 25 C 0.131 3.869 26 C -0.232 4.232 27 S 0.238 5.762 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.406 0.594 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -3.823 -21.374 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.226 4.226 6 C -0.262 4.262 7 N -0.148 5.148 8 C -0.116 4.116 9 C 0.379 3.621 10 O -0.414 6.414 11 N -0.330 5.330 12 C 0.068 3.932 13 C -0.207 4.207 14 C -0.185 4.185 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.004 3.996 26 C -0.374 4.374 27 S 0.495 5.505 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.242 0.758 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.008 -4.616 -21.363 21.879 hybrid contribution -0.676 0.234 1.360 1.536 sum 0.332 -4.382 -20.003 20.480 Atomic orbital electron populations 1.22863 0.79744 1.03299 1.00555 1.87893 1.20701 1.26360 1.95109 1.20289 0.88462 0.86194 0.94870 0.88712 1.22288 1.03240 1.02437 0.94669 1.26691 1.01992 0.96750 1.00778 1.66837 1.12687 1.27482 1.07761 1.20526 0.91014 0.97978 1.02112 1.16921 0.84740 0.80211 0.80220 1.90756 1.19520 1.72897 1.58196 1.45618 1.20697 1.25118 1.41530 1.21552 0.92993 0.90300 0.88395 1.21990 0.97368 1.00724 1.00663 1.23224 0.97944 0.97182 1.00106 1.21146 0.92181 0.88486 0.92844 1.44423 1.11953 1.30752 1.45741 1.19017 0.98594 1.04719 1.12618 0.90697 1.24746 0.96666 0.98731 1.00352 1.69940 1.08600 1.32977 1.45768 0.86222 0.77507 0.80767 0.81442 1.21197 1.21636 1.21336 1.21891 0.89493 0.98842 0.89335 1.26716 1.07202 0.99964 1.03551 1.82775 1.05832 1.26401 1.35493 0.93278 0.89112 0.93621 0.91051 0.90682 0.91351 0.75837 0.93104 0.91710 0.91063 0.90795 0.91732 0.93655 0.93831 0.93883 0.92670 0.95635 0.79275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.38 -3.93 10.16 -35.23 -0.36 -4.29 16 3 C 0.16 1.66 3.23 -27.88 -0.09 1.57 16 4 H 0.10 0.96 7.79 -51.93 -0.40 0.56 16 5 C -0.17 -1.25 9.51 37.16 0.35 -0.90 16 6 C 0.02 0.22 6.30 -13.61 -0.09 0.13 16 7 N -0.43 -6.64 10.12 -8.51 -0.09 -6.73 16 8 C 0.02 0.32 6.70 -84.52 -0.57 -0.25 16 9 C 0.60 11.25 7.19 -12.59 -0.09 11.16 16 10 O -0.54 -11.06 13.48 5.25 0.07 -10.99 16 11 N -0.68 -12.60 5.17 -46.73 -0.24 -12.84 16 12 C 0.15 2.91 0.82 -129.67 -0.11 2.80 16 13 C -0.15 -2.38 8.62 37.16 0.32 -2.06 16 14 C -0.15 -2.73 5.99 -24.90 -0.15 -2.88 16 15 C 0.18 4.38 5.36 -3.07 -0.02 4.37 16 16 N -0.60 -16.09 3.39 -170.07 -0.58 -16.67 16 17 C -0.22 -6.48 10.28 -15.06 -0.15 -6.63 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.68 10.31 55.49 0.57 -27.11 16 21 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C 0.13 3.01 6.11 -2.53 -0.02 3.00 16 26 C -0.23 -3.18 10.62 29.65 0.31 -2.86 16 27 S 0.24 2.61 22.73 -107.50 -2.44 0.16 16 28 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.25 7.87 -51.93 -0.41 -0.15 16 31 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.41 7.22 8.01 -40.82 -0.33 6.89 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 37 H 0.07 1.22 6.45 -51.93 -0.34 0.89 16 38 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 40 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 41 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.06 1.37 6.31 -51.93 -0.33 1.04 16 44 H 0.03 0.58 8.03 -51.93 -0.42 0.17 16 45 H 0.19 2.35 8.03 -52.48 -0.42 1.93 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.10 379.53 -8.39 -42.49 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.74 Total: 3.89 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 0.71 Total: 8.40 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.33 Total: -63.34 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.29 Total: -15.28 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.44 Total: 0.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.10 -8.39 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046319401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.384 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds