Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.47195 * 109.47245 * 240.00152 * 2 1 3 5 5 N 2.60795 * 109.47308 * 240.00084 * 2 1 3 6 6 C 1.50696 * 109.47174 * 119.99711 * 2 1 3 7 7 O 1.21282 * 119.99570 * 120.00150 * 6 2 1 8 8 N 1.34775 * 120.00301 * 300.00282 * 6 2 1 9 9 C 1.46499 * 119.99887 * 180.02562 * 8 6 2 10 10 C 1.53004 * 109.47098 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47463 * 179.97438 * 10 9 8 12 12 H 1.09004 * 110.88361 * 57.42398 * 11 10 9 13 13 C 1.55151 * 111.04050 * 181.33005 * 11 10 9 14 14 C 1.54338 * 103.02507 * 153.39563 * 13 11 10 15 15 N 1.47021 * 107.26155 * 338.14263 * 14 13 11 16 16 C 1.34781 * 125.64992 * 178.84864 * 15 14 13 17 17 O 1.21274 * 120.00344 * 179.69253 * 16 15 14 18 18 C 1.50701 * 119.99423 * 359.69048 * 16 15 14 19 19 S 1.81001 * 109.46896 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99894 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48490 * 109.46901 * 150.00205 * 24 22 20 28 28 C 1.47422 * 108.70588 * 358.58342 * 15 14 13 29 29 H 1.09000 * 109.46958 * 299.99983 * 1 2 3 30 30 H 1.09002 * 109.47111 * 59.99989 * 1 2 3 31 31 H 1.08997 * 109.46629 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00103 * 359.97438 * 8 6 2 33 33 H 1.08998 * 109.47862 * 60.00102 * 9 8 6 34 34 H 1.09000 * 109.46885 * 299.99559 * 9 8 6 35 35 H 1.09007 * 109.47218 * 59.99365 * 10 9 8 36 36 H 1.08997 * 109.47161 * 300.00007 * 10 9 8 37 37 H 1.09003 * 110.72492 * 271.95627 * 13 11 10 38 38 H 1.09003 * 110.72257 * 35.05062 * 13 11 10 39 39 H 1.08996 * 109.99183 * 218.66499 * 14 13 11 40 40 H 1.08998 * 109.77679 * 97.49207 * 14 13 11 41 41 H 1.09001 * 109.47454 * 60.00304 * 18 16 15 42 42 H 1.09003 * 109.47322 * 299.99933 * 18 16 15 43 43 H 0.97001 * 119.99662 * 179.97438 * 23 22 20 44 44 H 1.09003 * 110.37421 * 143.19407 * 28 15 14 45 45 H 1.08997 * 110.36947 * 265.51777 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0323 -0.7103 1.2305 7 8 2.7296 -1.6964 1.1191 8 7 1.7067 -0.2499 2.4546 9 6 2.1956 -0.9402 3.6507 10 6 1.6860 -0.2187 4.9000 11 6 2.1960 -0.9399 6.1492 12 1 3.2847 -0.9934 6.1498 13 6 1.6721 -0.2564 7.4398 14 6 1.6670 -1.4090 8.4663 15 7 1.6257 -2.6680 7.7083 16 6 1.6314 -3.9062 8.2408 17 8 1.5888 -4.8780 7.5167 18 6 1.6908 -4.0827 9.7363 19 16 1.6848 -5.8480 10.1360 20 6 1.7575 -5.7638 11.8945 21 1 1.7901 -4.8039 12.3883 22 6 1.7729 -6.9312 12.6452 23 7 1.7336 -8.1013 12.0433 24 14 1.8506 -6.8420 14.5094 25 1 3.2700 -6.8368 14.9460 26 1 1.1855 -5.5980 14.9736 27 1 1.1583 -8.0200 15.0906 28 6 1.5706 -2.3520 6.2694 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.1494 0.5390 2.5436 33 1 3.2856 -0.9397 3.6506 34 1 1.8326 -1.9680 3.6508 35 1 0.5959 -0.2186 4.9004 36 1 2.0492 0.8090 4.8996 37 1 2.3457 0.5406 7.7549 38 1 0.6638 0.1296 7.2899 39 1 0.7888 -1.3332 9.1073 40 1 2.5738 -1.3693 9.0698 41 1 0.8251 -3.6034 10.1934 42 1 2.6034 -3.6267 10.1201 43 1 1.7447 -8.9171 12.5679 44 1 2.1541 -3.0751 5.6994 45 1 0.5372 -2.3400 5.9229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -55.095991 kcal Electronic energy + Delta-G solvation = -25493.047304 eV Core-core repulsion = 21636.501248 eV Total energy + Delta-G solvation = -3856.546056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61319 -39.88756 -37.72911 -37.04266 -35.73566 -34.13112 -32.84918 -32.42943 -30.26014 -29.59873 -27.48658 -25.91089 -25.48382 -24.27755 -22.60482 -21.58543 -20.58935 -19.35785 -18.61287 -17.77982 -17.70991 -16.69093 -16.59582 -16.13270 -15.95766 -15.37906 -14.91319 -14.80496 -14.63341 -14.41046 -14.04408 -13.91797 -13.67193 -13.57061 -13.29533 -13.14551 -12.92094 -12.83249 -12.63509 -12.59557 -12.41284 -12.38595 -12.10416 -11.89662 -11.78009 -11.43834 -11.07336 -11.04609 -11.00631 -10.99118 -10.76276 -10.39416 -9.81798 -9.63575 -9.41748 -9.06775 -8.52003 -8.23329 -6.50450 -6.21644 -3.92481 1.95777 1.98911 2.33976 2.78137 2.91443 3.05840 3.22062 3.24917 3.25897 3.30099 3.61163 4.02213 4.03906 4.16992 4.20228 4.29914 4.34167 4.34626 4.67038 4.73780 4.82914 4.96347 4.97158 5.04358 5.07001 5.13403 5.15353 5.28019 5.34390 5.43297 5.49835 5.53707 5.57955 5.62379 5.70430 5.79390 5.83275 5.93534 5.94818 6.13239 6.41509 6.80754 7.09788 7.58642 7.59147 7.65824 8.34977 8.55333 9.23432 10.85774 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.001665 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.650475 B =16814.033381 C =17607.907884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.141 0.859 4 C 0.218 3.782 5 N -0.408 5.408 6 C 0.520 3.480 7 O -0.522 6.522 8 N -0.723 5.723 9 C 0.113 3.887 10 C -0.117 4.117 11 C -0.100 4.100 12 H 0.090 0.910 13 C -0.124 4.124 14 C 0.101 3.899 15 N -0.628 5.628 16 C 0.548 3.452 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.282 1.282 28 C 0.110 3.890 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 27.882 -17.336 33.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.159 0.841 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.303 3.697 7 O -0.397 6.397 8 N -0.375 5.375 9 C -0.010 4.010 10 C -0.156 4.156 11 C -0.120 4.120 12 H 0.108 0.892 13 C -0.162 4.162 14 C -0.022 4.022 15 N -0.365 5.365 16 C 0.336 3.664 17 O -0.389 6.389 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.197 1.197 27 H -0.207 1.207 28 C -0.013 4.013 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.792 24.587 -19.819 31.704 hybrid contribution -0.268 1.819 2.573 3.163 sum -3.060 26.407 -17.245 31.687 Atomic orbital electron populations 1.21821 0.89443 1.04586 1.04483 1.18831 0.98863 1.00149 0.85611 0.84135 1.28063 0.93988 0.94098 0.94045 1.81224 1.07472 1.07531 1.12076 1.20000 0.80727 0.84782 0.84211 1.90842 1.36830 1.25539 1.86442 1.45857 1.53995 1.32335 1.05358 1.21534 0.99965 0.96984 0.82506 1.21723 1.01696 0.99664 0.92472 1.22313 1.01182 0.94642 0.93832 0.89160 1.22677 1.02208 0.97142 0.94164 1.21990 1.02197 0.83212 0.94844 1.48494 1.75741 1.05447 1.06841 1.20037 0.75191 0.80825 0.90334 1.90716 1.48063 1.37831 1.62247 1.23506 1.04739 1.08133 0.93323 1.85425 1.96553 0.94937 1.06530 1.22857 1.58903 0.95456 0.91169 0.90936 1.24996 0.94537 0.94506 0.99532 1.70022 1.46759 0.97411 1.36034 0.86164 0.78362 0.77866 0.83079 1.20266 1.19706 1.20742 1.22247 1.00633 0.95485 0.82962 0.89810 0.90129 0.90825 0.76199 0.90859 0.90564 0.90566 0.90471 0.89900 0.90393 0.91247 0.91270 0.89336 0.89323 0.92170 0.90295 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.14 9.04 37.16 0.34 0.20 16 2 C -0.01 -0.03 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 -0.09 8.14 -51.93 -0.42 -0.52 16 4 C 0.22 1.80 13.88 -20.76 -0.29 1.51 16 5 N -0.41 -4.82 18.54 42.15 0.78 -4.04 16 6 C 0.52 3.36 7.14 -10.99 -0.08 3.28 16 7 O -0.52 -6.44 16.03 5.56 0.09 -6.35 16 8 N -0.72 -2.54 5.45 -60.29 -0.33 -2.87 16 9 C 0.11 0.61 5.52 -4.04 -0.02 0.59 16 10 C -0.12 -0.40 4.85 -26.73 -0.13 -0.53 16 11 C -0.10 -0.63 3.07 -88.47 -0.27 -0.90 16 12 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 13 C -0.12 -0.71 6.42 -24.89 -0.16 -0.87 16 14 C 0.10 0.97 6.49 -3.06 -0.02 0.95 16 15 N -0.63 -8.66 3.33 -170.52 -0.57 -9.22 16 16 C 0.55 10.56 7.87 -10.98 -0.09 10.47 16 17 O -0.51 -12.07 16.12 5.56 0.09 -11.98 16 18 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 C 0.11 1.17 5.56 -2.53 -0.01 1.16 16 29 H 0.08 -0.13 7.56 -51.93 -0.39 -0.52 16 30 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.40 -0.12 7.89 -40.82 -0.32 -0.44 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 7.46 -51.93 -0.39 0.20 16 35 H 0.08 0.20 8.10 -51.92 -0.42 -0.22 16 36 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.36 8.04 -51.93 -0.42 -0.05 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 45 H 0.07 0.66 8.00 -51.93 -0.42 0.24 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -41.18 398.11 -8.04 -49.22 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -6.96 Total: -7.45 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.64 Total: -0.25 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.62 Total: -41.62 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.18 Total: -18.33 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -41.18 -8.04 -49.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.878 kcal (2) G-P(sol) polarization free energy of solvation -41.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds