Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46621 * 2 1 4 4 C 1.47195 * 109.47051 * 119.99454 * 2 1 3 5 5 N 2.60797 * 109.47199 * 119.99711 * 2 1 3 6 6 C 1.50699 * 109.47174 * 240.00290 * 2 1 3 7 7 O 1.21281 * 119.99588 * 240.00262 * 6 2 1 8 8 N 1.34776 * 120.00256 * 59.99127 * 6 2 1 9 9 C 1.46502 * 120.00127 * 180.02562 * 8 6 2 10 10 C 1.52989 * 109.47119 * 180.02562 * 9 8 6 11 11 C 1.53009 * 109.46967 * 180.02562 * 10 9 8 12 12 H 1.08999 * 110.88448 * 308.87817 * 11 10 9 13 13 C 1.55160 * 111.00399 * 184.99880 * 11 10 9 14 14 C 1.54316 * 102.94268 * 206.42607 * 13 11 10 15 15 N 1.47026 * 107.27365 * 22.19228 * 14 13 11 16 16 C 1.34771 * 125.65100 * 180.79395 * 15 14 13 17 17 O 1.21280 * 119.99952 * 180.02562 * 16 15 14 18 18 C 1.50705 * 119.99988 * 0.02691 * 16 15 14 19 19 S 1.80993 * 109.46992 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00132 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99797 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00331 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00111 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99955 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46872 * 120.00284 * 24 22 20 27 27 H 1.48499 * 109.47121 * 239.99977 * 24 22 20 28 28 C 1.47425 * 108.70074 * 1.05989 * 15 14 13 29 29 H 1.09000 * 109.46621 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46824 * 299.99977 * 1 2 3 31 31 H 1.09000 * 109.46989 * 60.00119 * 1 2 3 32 32 H 0.96994 * 119.99994 * 0.02562 * 8 6 2 33 33 H 1.08996 * 109.46777 * 60.00129 * 9 8 6 34 34 H 1.09003 * 109.46996 * 300.00758 * 9 8 6 35 35 H 1.08996 * 109.47596 * 60.00134 * 10 9 8 36 36 H 1.09003 * 109.47400 * 300.00014 * 10 9 8 37 37 H 1.08997 * 110.71793 * 88.05937 * 13 11 10 38 38 H 1.09003 * 110.87062 * 324.86280 * 13 11 10 39 39 H 1.09004 * 109.88447 * 262.78098 * 14 13 11 40 40 H 1.09000 * 109.88516 * 141.60887 * 14 13 11 41 41 H 1.08993 * 109.46871 * 299.99760 * 18 16 15 42 42 H 1.09000 * 109.46865 * 59.99842 * 18 16 15 43 43 H 0.97001 * 120.00554 * 179.97438 * 23 22 20 44 44 H 1.09001 * 110.36478 * 94.71036 * 28 15 14 45 45 H 1.08998 * 110.36859 * 217.03414 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3994 -1.2293 2.1294 6 6 2.0324 -0.7103 -1.2305 7 8 2.7296 -1.6964 -1.1192 8 7 1.7067 -0.2500 -2.4546 9 6 2.1946 -0.9409 -3.6508 10 6 1.6851 -0.2193 -4.8999 11 6 2.1942 -0.9413 -6.1492 12 1 3.2722 -1.0940 -6.0976 13 6 1.8029 -0.1684 -7.4365 14 6 1.7539 -1.2801 -8.5057 15 7 1.5539 -2.5549 -7.8011 16 6 1.4719 -3.7686 -8.3812 17 8 1.3046 -4.7570 -7.6986 18 6 1.5883 -3.8976 -9.8782 19 16 1.4397 -5.6395 -10.3470 20 6 1.6063 -5.5011 -12.0956 21 1 1.7513 -4.5317 -12.5492 22 6 1.5522 -6.6379 -12.8901 23 7 1.3760 -7.8194 -12.3374 24 14 1.7281 -6.4909 -14.7440 25 1 1.9144 -5.0644 -15.1121 26 1 2.9062 -7.2755 -15.1932 27 1 0.5041 -7.0163 -15.4006 28 6 1.4514 -2.2850 -6.3554 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1493 0.5388 -2.5436 33 1 1.8310 -1.9684 -3.6505 34 1 3.2847 -0.9413 -3.6509 35 1 2.0491 0.8081 -4.9000 36 1 0.5951 -0.2186 -4.9000 37 1 2.5612 0.5737 -7.6862 38 1 0.8263 0.3027 -7.3248 39 1 2.6935 -1.3052 -9.0577 40 1 0.9243 -1.1004 -9.1895 41 1 0.7939 -3.3236 -10.3551 42 1 2.5568 -3.5160 -10.2016 43 1 1.3378 -8.6139 -12.8926 44 1 0.4064 -2.1899 -6.0604 45 1 1.9366 -3.0778 -5.7861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -55.226582 kcal Electronic energy + Delta-G solvation = -25459.804000 eV Core-core repulsion = 21603.252282 eV Total energy + Delta-G solvation = -3856.551719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61600 -39.88785 -37.72607 -37.04858 -35.74402 -34.13464 -32.85090 -32.43363 -30.25599 -29.60627 -27.51630 -25.91390 -25.48789 -24.22432 -22.61918 -21.60623 -20.59827 -19.35884 -18.63189 -17.78370 -17.71373 -16.66877 -16.58203 -16.15194 -15.96826 -15.36257 -14.94704 -14.80977 -14.63432 -14.40285 -14.05340 -13.91750 -13.68298 -13.58445 -13.29436 -13.14367 -12.92380 -12.84297 -12.62455 -12.59485 -12.41252 -12.37733 -12.10826 -11.90060 -11.78869 -11.45501 -11.07851 -11.04624 -11.00480 -10.99241 -10.75963 -10.40111 -9.81054 -9.64180 -9.42012 -9.07874 -8.52203 -8.23134 -6.50703 -6.22065 -3.92816 1.95085 1.98380 2.33387 2.77444 2.91426 3.05586 3.21075 3.24494 3.25882 3.30738 3.61079 4.02171 4.03970 4.16584 4.19834 4.29614 4.33355 4.34151 4.67031 4.73389 4.82672 4.95973 4.96888 5.04433 5.06308 5.13140 5.15892 5.28399 5.34135 5.43192 5.49458 5.53655 5.57331 5.62173 5.70382 5.79391 5.82802 5.93426 5.94852 6.13121 6.41208 6.80214 7.09213 7.57945 7.59194 7.65612 8.34908 8.55060 9.23203 10.85436 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.001642 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.144052 B =17045.040136 C =17774.019098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.141 0.859 4 C 0.218 3.782 5 N -0.408 5.408 6 C 0.520 3.480 7 O -0.522 6.522 8 N -0.723 5.723 9 C 0.114 3.886 10 C -0.118 4.118 11 C -0.100 4.100 12 H 0.090 0.910 13 C -0.124 4.124 14 C 0.101 3.899 15 N -0.627 5.627 16 C 0.548 3.452 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.110 3.890 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.403 0.597 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.065 0.935 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 27.226 18.226 32.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.159 0.841 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.303 3.697 7 O -0.397 6.397 8 N -0.375 5.375 9 C -0.009 4.009 10 C -0.156 4.156 11 C -0.120 4.120 12 H 0.109 0.891 13 C -0.162 4.162 14 C -0.023 4.023 15 N -0.365 5.365 16 C 0.336 3.664 17 O -0.389 6.389 18 C -0.297 4.297 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.013 4.013 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.238 0.762 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.686 23.917 20.634 31.633 hybrid contribution -0.062 1.866 -2.517 3.134 sum -1.748 25.783 18.118 31.561 Atomic orbital electron populations 1.21824 0.89433 1.04588 1.04492 1.18834 0.98869 1.00152 0.85605 0.84132 1.28064 0.93983 0.94094 0.94045 1.81225 1.07480 1.07539 1.12071 1.20000 0.80715 0.84772 0.84213 1.90839 1.36859 1.25554 1.86449 1.45859 1.54003 1.32321 1.05357 1.21529 0.99929 0.96962 0.82507 1.21728 1.01740 0.99669 0.92456 1.22318 1.01053 0.94827 0.93769 0.89141 1.22675 1.02604 0.97058 0.93859 1.21992 1.01832 0.83073 0.95365 1.48494 1.74512 1.06304 1.07208 1.20037 0.75417 0.80976 0.89956 1.90717 1.47453 1.35863 1.64855 1.23503 1.04740 1.08175 0.93272 1.85424 1.95041 0.96703 1.06321 1.22898 1.57669 0.96230 0.91516 0.90882 1.24995 0.94565 0.94470 0.99556 1.70027 1.46271 0.98044 1.35892 0.86113 0.77963 0.78313 0.83078 1.19620 1.20562 1.20558 1.22250 0.99966 0.96471 0.82598 0.90825 0.90120 0.89808 0.76188 0.90608 0.90873 0.90460 0.90538 0.89912 0.90361 0.91258 0.91263 0.89334 0.89323 0.92219 0.91648 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.13 9.05 37.16 0.34 0.20 16 2 C -0.01 -0.03 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 -0.10 8.14 -51.93 -0.42 -0.52 16 4 C 0.22 1.78 13.88 -20.76 -0.29 1.49 16 5 N -0.41 -4.79 18.54 42.15 0.78 -4.01 16 6 C 0.52 3.31 7.14 -10.99 -0.08 3.24 16 7 O -0.52 -6.38 16.03 5.56 0.09 -6.29 16 8 N -0.72 -2.49 5.45 -60.30 -0.33 -2.82 16 9 C 0.11 0.60 5.58 -4.05 -0.02 0.58 16 10 C -0.12 -0.40 4.84 -26.73 -0.13 -0.52 16 11 C -0.10 -0.63 3.01 -88.46 -0.27 -0.89 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 13 C -0.12 -0.71 6.42 -24.90 -0.16 -0.87 16 14 C 0.10 0.97 6.49 -3.07 -0.02 0.95 16 15 N -0.63 -8.63 3.33 -170.52 -0.57 -9.20 16 16 C 0.55 10.54 7.87 -10.99 -0.09 10.45 16 17 O -0.51 -12.04 16.12 5.56 0.09 -11.95 16 18 C -0.15 -3.00 5.35 36.01 0.19 -2.80 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.11 1.17 5.86 -2.53 -0.01 1.16 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.08 -0.13 7.56 -51.93 -0.39 -0.52 16 32 H 0.40 -0.13 7.89 -40.82 -0.32 -0.46 16 33 H 0.08 0.57 7.75 -51.93 -0.40 0.17 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.08 0.21 7.96 -51.93 -0.41 -0.20 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.36 8.04 -51.93 -0.42 -0.05 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 45 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -41.14 398.52 -8.03 -49.17 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -6.97 Total: -7.55 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.63 Total: -0.31 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.62 Total: -41.49 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.18 Total: -18.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -41.14 -8.03 -49.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.052 kcal (2) G-P(sol) polarization free energy of solvation -41.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds