Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47135 * 2 1 4 4 C 1.47203 * 109.47185 * 239.99784 * 2 1 3 5 5 N 2.60801 * 109.47245 * 239.99856 * 2 1 3 6 6 C 1.50706 * 109.47116 * 120.00050 * 2 1 3 7 7 O 1.21276 * 119.99698 * 86.33717 * 6 2 1 8 8 N 1.34768 * 119.99962 * 266.06269 * 6 2 1 9 9 C 1.47030 * 125.64958 * 354.94617 * 8 6 2 10 10 C 1.54314 * 107.27523 * 180.96717 * 9 8 6 11 11 C 1.55157 * 102.86621 * 22.52778 * 10 9 8 12 12 H 1.08998 * 111.03484 * 82.39120 * 11 10 9 13 13 C 1.52999 * 111.00489 * 206.23042 * 11 10 9 14 14 C 1.52999 * 109.46726 * 287.19316 * 13 11 10 15 15 N 1.46500 * 109.47123 * 180.02562 * 14 13 11 16 16 C 1.34776 * 120.00480 * 180.02562 * 15 14 13 17 17 O 1.21286 * 119.99670 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00360 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47386 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00088 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99965 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99806 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00317 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46916 * 90.00211 * 24 22 20 26 26 H 1.48495 * 109.47444 * 210.00362 * 24 22 20 27 27 H 1.48506 * 109.47214 * 330.00600 * 24 22 20 28 28 C 1.47428 * 125.64978 * 175.25381 * 8 6 2 29 29 H 1.09001 * 109.47247 * 55.63731 * 1 2 3 30 30 H 1.09002 * 109.47219 * 175.63983 * 1 2 3 31 31 H 1.09004 * 109.46766 * 295.63616 * 1 2 3 32 32 H 1.09004 * 109.87912 * 300.51405 * 9 8 6 33 33 H 1.08994 * 109.88135 * 61.67634 * 9 8 6 34 34 H 1.08997 * 110.92513 * 264.10921 * 10 9 8 35 35 H 1.09003 * 110.58501 * 140.78794 * 10 9 8 36 36 H 1.08998 * 109.47274 * 47.18796 * 13 11 10 37 37 H 1.08997 * 109.46867 * 167.19625 * 13 11 10 38 38 H 1.08997 * 109.47480 * 300.00114 * 14 13 11 39 39 H 1.09000 * 109.47668 * 60.00322 * 14 13 11 40 40 H 0.97006 * 119.99734 * 359.97438 * 15 14 13 41 41 H 1.09007 * 109.47345 * 299.99500 * 18 16 15 42 42 H 1.09001 * 109.47351 * 59.99680 * 18 16 15 43 43 H 0.96993 * 120.00194 * 179.97438 * 23 22 20 44 44 H 1.09001 * 110.36515 * 274.67365 * 28 8 6 45 45 H 1.08998 * 110.36645 * 36.88623 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3994 -1.2295 -2.1294 6 6 2.0323 -0.7104 1.2305 7 8 2.1712 -1.9152 1.2208 8 7 2.3325 -0.0064 2.3397 9 6 2.3173 1.4594 2.4546 10 6 2.7512 1.8108 3.8932 11 6 3.5389 0.5489 4.3345 12 1 4.5654 0.5811 3.9696 13 6 3.5053 0.3855 5.8554 14 6 4.4072 1.4392 6.5014 15 7 4.3756 1.2824 7.9577 16 6 5.0993 2.1073 8.7402 17 8 5.7771 2.9791 8.2387 18 6 5.0673 1.9456 10.2381 19 16 6.1341 3.1921 11.0025 20 6 5.9131 2.7834 12.7021 21 1 5.2652 1.9656 12.9809 22 6 6.5724 3.5118 13.6825 23 7 7.3625 4.5083 13.3426 24 14 6.3387 3.0781 15.4843 25 1 7.3604 2.0795 15.8896 26 1 6.4876 4.3022 16.3115 27 1 4.9823 2.5074 15.6842 28 6 2.7367 -0.5780 3.6372 29 1 -0.3634 0.5800 -0.8483 30 1 -0.3634 -1.0247 -0.0781 31 1 -0.3633 0.4446 0.9266 32 1 3.0143 1.8945 1.7384 33 1 1.3109 1.8352 2.2708 34 1 1.8836 1.9676 4.5341 35 1 3.3971 2.6888 3.8950 36 1 2.4834 0.5140 6.2122 37 1 3.8609 -0.6098 6.1218 38 1 5.4291 1.3109 6.1447 39 1 4.0517 2.4345 6.2351 40 1 3.8332 0.5853 8.3588 41 1 4.0454 2.0730 10.5955 42 1 5.4238 0.9504 10.5039 43 1 7.8229 5.0176 14.0277 44 1 1.8579 -0.8389 4.2270 45 1 3.3653 -1.4555 3.4858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001060290110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -84.028696 kcal Electronic energy + Delta-G solvation = -25229.540416 eV Core-core repulsion = 21371.739744 eV Total energy + Delta-G solvation = -3857.800672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42754 -40.54987 -39.09483 -37.67998 -36.34351 -34.60979 -34.55819 -33.54389 -31.36202 -30.40371 -28.75552 -27.62585 -26.26196 -24.44341 -23.67449 -21.86558 -21.14127 -20.98621 -19.78420 -18.65046 -18.48893 -17.76213 -17.21351 -16.86896 -16.84289 -16.70283 -16.32499 -16.01251 -15.77451 -15.33912 -14.97321 -14.68310 -14.52886 -14.40428 -14.21601 -14.10969 -13.89538 -13.63488 -13.58132 -13.32628 -13.14788 -13.13619 -12.96446 -12.87092 -12.80112 -12.59417 -12.49927 -12.34726 -11.99948 -11.69553 -11.54615 -11.45447 -11.12491 -11.00876 -10.88625 -10.24762 -10.03612 -9.69559 -8.64060 -8.32842 -6.10522 1.22769 1.30175 1.43967 1.44485 1.49894 1.60032 1.64353 1.66938 2.07086 2.28782 2.38204 2.79184 3.01513 3.31299 3.35173 3.65172 3.68295 3.88914 3.94497 4.01934 4.04716 4.28441 4.32764 4.37684 4.41418 4.48665 4.55478 4.59581 4.74862 4.78084 4.78881 4.82036 4.93089 4.98207 5.09018 5.19856 5.24326 5.27113 5.32454 5.43941 5.47185 5.53249 6.21743 6.31489 6.45968 6.57683 6.95420 7.08805 7.31249 8.76305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044774 B = 0.001411 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.207352 B =19845.369226 C =20007.581019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 H 0.178 0.822 4 C 0.238 3.762 5 N -0.474 5.474 6 C 0.534 3.466 7 O -0.584 6.584 8 N -0.609 5.609 9 C 0.086 3.914 10 C -0.129 4.129 11 C -0.093 4.093 12 H 0.083 0.917 13 C -0.107 4.107 14 C 0.120 3.880 15 N -0.713 5.713 16 C 0.532 3.468 17 O -0.568 6.568 18 C -0.131 4.131 19 S -0.153 6.153 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.108 3.892 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.956 -6.919 -22.777 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.195 0.805 4 C -0.080 4.080 5 N -0.150 5.150 6 C 0.321 3.679 7 O -0.464 6.464 8 N -0.342 5.342 9 C -0.035 4.035 10 C -0.166 4.166 11 C -0.113 4.113 12 H 0.101 0.899 13 C -0.145 4.145 14 C -0.003 4.003 15 N -0.367 5.367 16 C 0.318 3.682 17 O -0.446 6.446 18 C -0.282 4.282 19 S 0.074 5.926 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.181 1.181 28 C -0.014 4.014 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.113 -6.823 -25.062 31.105 hybrid contribution -0.534 -1.363 2.080 2.543 sum -17.647 -8.186 -22.982 30.110 Atomic orbital electron populations 1.21814 0.87023 1.04024 1.06658 1.19141 1.00563 1.00737 0.81973 0.80525 1.28935 0.92365 0.92627 0.94062 1.81239 1.09914 1.09809 1.14046 1.20089 0.77302 0.86529 0.83946 1.90779 1.55079 1.16644 1.83897 1.48490 1.65989 1.09187 1.10489 1.22535 1.04453 0.77664 0.98823 1.22824 1.01150 0.97603 0.95067 1.22209 0.99857 0.94997 0.94198 0.89865 1.21622 1.00825 0.98637 0.93443 1.21417 1.00218 1.00345 0.78348 1.45766 1.48409 1.35327 1.07248 1.20030 0.78821 0.81017 0.88355 1.90693 1.42526 1.35377 1.76008 1.23388 1.05411 1.04736 0.94676 1.85565 1.60373 1.42967 1.03702 1.23214 1.33678 1.20987 0.91576 0.89899 1.26101 0.93884 0.94155 1.04891 1.70179 1.28666 1.20123 1.35808 0.84973 0.79304 0.77925 0.75900 1.19450 1.20346 1.18131 1.22327 0.99245 0.96635 0.83181 0.87954 0.92799 0.87440 0.89158 0.87376 0.88790 0.89037 0.88768 0.90132 0.93047 0.91581 0.74613 0.87092 0.87374 0.92025 0.89742 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.17 9.13 71.98 0.66 0.49 16 2 C 0.00 0.00 2.80 -13.34 -0.04 -0.04 16 3 H 0.18 -0.57 6.96 -2.39 -0.02 -0.58 16 4 C 0.24 3.74 14.13 89.44 1.26 5.00 16 5 N -0.47 -11.01 18.54 20.01 0.37 -10.64 16 6 C 0.53 6.86 6.84 87.66 0.60 7.46 16 7 O -0.58 -14.08 16.64 -3.02 -0.05 -14.13 16 8 N -0.61 -4.79 3.33 -811.79 -2.70 -7.49 16 9 C 0.09 0.04 6.00 86.72 0.52 0.57 16 10 C -0.13 -0.35 5.91 31.78 0.19 -0.16 16 11 C -0.09 -0.61 3.00 -9.40 -0.03 -0.64 16 12 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 13 C -0.11 -0.81 4.84 30.59 0.15 -0.66 16 14 C 0.12 1.95 5.58 86.38 0.48 2.43 16 15 N -0.71 -14.92 5.56 -463.07 -2.57 -17.49 16 16 C 0.53 18.11 7.85 87.65 0.69 18.80 16 17 O -0.57 -24.91 15.86 -3.05 -0.05 -24.96 16 18 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 19 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 20 C -0.55 -30.61 9.50 67.95 0.65 -29.96 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.23 13.22 21.65 0.29 -54.94 16 24 Si 1.00 42.76 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 28 C 0.11 0.97 6.40 86.86 0.56 1.53 16 29 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.09 -0.16 7.91 -2.39 -0.02 -0.18 16 33 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.09 0.13 7.91 -2.39 -0.02 0.11 16 35 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.09 0.43 7.97 -2.39 -0.02 0.41 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.15 7.75 -2.39 -0.02 1.13 16 40 H 0.42 5.74 8.47 -92.70 -0.79 4.96 16 41 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 42 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.08 0.61 8.04 -2.39 -0.02 0.59 16 45 H 0.06 0.83 7.99 -2.39 -0.02 0.81 16 Total: -1.00 -91.67 398.75 2.95 -88.72 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 0.22 Total: 3.98 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.59 Total: 1.63 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -4.62 Total: -90.56 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.10 Total: -39.09 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -91.67 2.95 -88.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060290110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.689 kcal (2) G-P(sol) polarization free energy of solvation -91.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds