Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.47199 * 109.47092 * 239.99496 * 2 1 3 5 5 N 2.60798 * 109.47237 * 239.99721 * 2 1 3 6 6 C 1.50706 * 109.46680 * 119.99959 * 2 1 3 7 7 O 1.21277 * 119.99925 * 120.00442 * 6 2 1 8 8 N 1.34773 * 119.99704 * 299.99517 * 6 2 1 9 9 C 1.46506 * 119.99544 * 180.02562 * 8 6 2 10 10 C 1.53007 * 109.46803 * 185.03470 * 9 8 6 11 11 H 1.08996 * 109.58447 * 298.61740 * 10 9 8 12 12 C 1.53195 * 109.58457 * 58.90346 * 10 9 8 13 13 C 1.53040 * 109.31018 * 174.56213 * 12 10 9 14 14 C 1.53039 * 109.54185 * 298.63803 * 13 12 10 15 15 C 1.53195 * 109.31533 * 61.35989 * 14 13 12 16 16 N 1.46925 * 109.70021 * 178.26457 * 10 9 8 17 17 C 1.34773 * 120.63431 * 6.53235 * 16 10 9 18 18 O 1.21281 * 119.99955 * 5.56857 * 17 16 10 19 19 C 1.50701 * 120.00292 * 185.57179 * 17 16 10 20 20 S 1.80997 * 109.47289 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99954 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00054 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00137 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99315 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00214 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47099 * 59.99703 * 25 23 21 27 27 H 1.48497 * 109.47120 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46878 * 299.99669 * 25 23 21 29 29 H 1.09005 * 109.46957 * 59.99808 * 1 2 3 30 30 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47079 * 300.00539 * 1 2 3 32 32 H 0.96997 * 120.00779 * 0.02562 * 8 6 2 33 33 H 1.08995 * 109.47144 * 65.03772 * 9 8 6 34 34 H 1.08999 * 109.47265 * 305.03212 * 9 8 6 35 35 H 1.08995 * 109.49937 * 54.61353 * 12 10 9 36 36 H 1.08992 * 109.52299 * 294.52680 * 12 10 9 37 37 H 1.09000 * 109.46216 * 178.61294 * 13 12 10 38 38 H 1.09004 * 109.44882 * 58.64711 * 13 12 10 39 39 H 1.09005 * 109.49605 * 301.41434 * 14 13 12 40 40 H 1.08996 * 109.52975 * 181.33292 * 14 13 12 41 41 H 1.09001 * 109.58478 * 65.15465 * 15 14 13 42 42 H 1.08993 * 109.58586 * 185.58144 * 15 14 13 43 43 H 1.09009 * 109.46680 * 300.00045 * 19 17 16 44 44 H 1.08996 * 109.47099 * 59.99497 * 19 17 16 45 45 H 0.97006 * 119.99537 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1293 6 6 2.0323 -0.7104 1.2305 7 8 2.7295 -1.6965 1.1193 8 7 1.7066 -0.2499 2.4546 9 6 2.1954 -0.9402 3.6508 10 6 1.5845 -0.2957 4.8968 11 1 1.8910 0.7486 4.9555 12 6 0.0567 -0.3793 4.8217 13 6 -0.5436 0.1430 6.1289 14 6 -0.0690 -0.7281 7.2942 15 6 1.4575 -0.6486 7.3974 16 7 2.0388 -1.0105 6.0974 17 6 2.9709 -1.9798 6.0081 18 8 3.5163 -2.2007 4.9476 19 6 3.3356 -2.7892 7.2258 20 16 4.6066 -4.0007 6.7867 21 6 4.8364 -4.7828 8.3488 22 1 4.2617 -4.4598 9.2043 23 6 5.7561 -5.8142 8.4799 24 7 6.4560 -6.2082 7.4372 25 14 5.9992 -6.6439 10.1358 26 1 4.7173 -7.2477 10.5799 27 1 7.0300 -7.7055 10.0109 28 1 6.4442 -5.6376 11.1330 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1488 0.5386 2.5436 33 1 3.2816 -0.8624 3.6969 34 1 1.9078 -1.9907 3.6071 35 1 -0.2440 -1.4161 4.6720 36 1 -0.3007 0.2270 3.9894 37 1 -1.6314 0.1077 6.0687 38 1 -0.2221 1.1720 6.2904 39 1 -0.3685 -1.7618 7.1212 40 1 -0.5154 -0.3704 8.2220 41 1 1.7535 0.3670 7.6600 42 1 1.8087 -1.3428 8.1607 43 1 3.7187 -2.1260 8.0015 44 1 2.4510 -3.3078 7.5956 45 1 7.0985 -6.9293 7.5287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062017834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -67.362788 kcal Electronic energy + Delta-G solvation = -27095.560117 eV Core-core repulsion = 23238.482133 eV Total energy + Delta-G solvation = -3857.077984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76622 -40.84273 -38.41791 -37.72393 -36.20772 -34.59865 -34.45543 -33.87516 -32.36902 -30.44632 -27.91591 -27.56605 -26.04766 -25.46322 -23.32353 -22.12611 -21.87709 -20.36004 -19.63792 -19.11918 -18.19012 -17.84417 -17.34106 -16.89253 -16.75160 -16.44930 -16.06383 -15.79017 -15.42753 -15.31135 -15.03128 -14.93773 -14.74258 -14.47134 -14.26456 -14.20655 -14.11390 -13.76293 -13.49139 -13.39590 -13.22191 -13.15779 -12.87635 -12.87027 -12.74183 -12.62753 -12.38445 -12.11085 -11.90275 -11.73896 -11.58562 -11.46106 -11.13786 -11.01018 -10.45121 -10.25063 -10.03232 -9.55262 -8.68183 -8.35146 -6.13839 1.23589 1.36258 1.42786 1.46500 1.50633 1.54881 1.58735 1.71905 1.99909 2.26804 2.45767 2.80268 2.98788 3.25196 3.53522 3.72484 3.80352 3.91582 3.96358 4.00006 4.13628 4.20692 4.23349 4.26438 4.33672 4.44905 4.55289 4.73371 4.78853 4.87085 4.89756 4.97486 5.04023 5.11999 5.14807 5.23055 5.31617 5.32148 5.37747 5.39796 5.55691 5.68677 6.18157 6.28290 6.40452 6.57545 7.05532 7.16231 7.27962 8.73781 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.002859 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.166267 B = 9792.064071 C =11882.016943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.002 3.998 3 H 0.194 0.806 4 C 0.239 3.761 5 N -0.481 5.481 6 C 0.513 3.487 7 O -0.592 6.592 8 N -0.699 5.699 9 C 0.134 3.866 10 C 0.140 3.860 11 H 0.110 0.890 12 C -0.128 4.128 13 C -0.112 4.112 14 C -0.136 4.136 15 C 0.100 3.900 16 N -0.602 5.602 17 C 0.527 3.473 18 O -0.550 6.550 19 C -0.122 4.122 20 S -0.158 6.158 21 C -0.544 4.544 22 H 0.084 0.916 23 C 0.011 3.989 24 N -0.913 5.913 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.281 1.281 28 H -0.259 1.259 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.121 0.879 32 H 0.423 0.577 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.749 24.960 -2.057 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.211 0.789 4 C -0.079 4.079 5 N -0.157 5.157 6 C 0.298 3.702 7 O -0.472 6.472 8 N -0.355 5.355 9 C 0.010 3.990 10 C 0.037 3.963 11 H 0.128 0.872 12 C -0.166 4.166 13 C -0.150 4.150 14 C -0.174 4.174 15 C -0.022 4.022 16 N -0.338 5.338 17 C 0.315 3.685 18 O -0.428 6.428 19 C -0.274 4.274 20 S 0.069 5.931 21 C -0.692 4.692 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.550 5.550 25 Si 0.821 3.179 26 H -0.186 1.186 27 H -0.206 1.206 28 H -0.184 1.184 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.765 23.031 -5.123 31.430 hybrid contribution 0.034 -0.773 2.198 2.330 sum -20.731 22.257 -2.925 30.557 Atomic orbital electron populations 1.21932 0.86532 1.04072 1.07268 1.19238 1.00786 1.01120 0.81087 0.78877 1.29066 0.92130 0.92654 0.94085 1.81199 1.09841 1.09691 1.15012 1.20725 0.79738 0.84050 0.85649 1.90870 1.39914 1.29044 1.87355 1.45790 1.53292 1.32206 1.04200 1.21746 0.98819 0.94882 0.83521 1.21604 0.95776 0.96614 0.82277 0.87203 1.22067 0.91737 1.02226 1.00592 1.21514 1.01220 0.99864 0.92385 1.21958 0.93670 1.00735 1.01050 1.22095 0.94657 1.02625 0.82814 1.48108 1.39863 1.35988 1.09809 1.20182 0.79155 0.80097 0.89069 1.90780 1.53491 1.68283 1.30196 1.23382 1.03234 1.00857 0.99879 1.85713 1.48638 1.40796 1.17908 1.23156 1.27706 1.22541 0.95793 0.89802 1.26175 0.94260 0.96684 1.02230 1.70200 1.24281 1.28255 1.32243 0.84991 0.78429 0.77747 0.76757 1.18559 1.20590 1.18371 0.88092 0.93028 0.86049 0.73731 0.92022 0.94556 0.93461 0.87009 0.89912 0.89410 0.93191 0.88326 0.88460 0.90019 0.87437 0.87948 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 9.04 71.98 0.65 0.24 16 2 C 0.00 0.02 3.10 -13.34 -0.04 -0.02 16 3 H 0.19 0.01 8.14 -2.39 -0.02 0.00 16 4 C 0.24 5.40 13.88 89.44 1.24 6.64 16 5 N -0.48 -14.76 18.54 20.01 0.37 -14.39 16 6 C 0.51 11.11 7.14 87.66 0.63 11.73 16 7 O -0.59 -22.63 16.02 -3.02 -0.05 -22.68 16 8 N -0.70 -10.63 5.12 -463.04 -2.37 -13.00 16 9 C 0.13 3.49 3.56 86.38 0.31 3.79 16 10 C 0.14 2.35 3.06 44.98 0.14 2.49 16 11 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 12 C -0.13 -1.24 5.10 30.67 0.16 -1.08 16 13 C -0.11 -0.70 5.88 30.62 0.18 -0.52 16 14 C -0.14 -1.44 6.08 30.67 0.19 -1.25 16 15 C 0.10 1.52 6.35 86.36 0.55 2.07 16 16 N -0.60 -14.01 2.97 -795.02 -2.36 -16.37 16 17 C 0.53 19.17 7.55 87.66 0.66 19.84 16 18 O -0.55 -25.17 11.43 -3.03 -0.03 -25.20 16 19 C -0.12 -4.87 4.51 71.24 0.32 -4.55 16 20 S -0.16 -8.97 20.57 -56.49 -1.16 -10.14 16 21 C -0.54 -31.44 9.50 67.96 0.65 -30.80 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.64 5.49 84.86 0.47 1.10 16 24 N -0.91 -57.62 13.22 21.65 0.29 -57.34 16 25 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 28 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 29 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 -0.57 7.56 -2.39 -0.02 -0.58 16 32 H 0.42 1.29 6.89 -92.71 -0.64 0.66 16 33 H 0.06 2.22 6.24 -2.39 -0.01 2.20 16 34 H 0.04 1.30 7.24 -2.39 -0.02 1.28 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.11 0.22 7.08 -2.39 -0.02 0.20 16 37 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.43 5.93 -2.39 -0.01 1.42 16 43 H 0.11 3.83 7.72 -2.39 -0.02 3.81 16 44 H 0.10 3.75 7.92 -2.40 -0.02 3.74 16 45 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -100.77 383.12 3.17 -97.59 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.38 Total: 5.72 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 6.09 Total: 9.67 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.07 Total: -101.10 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.08 Total: -47.88 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.14 kcal Total: -100.77 3.17 -97.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062017834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.232 kcal (2) G-P(sol) polarization free energy of solvation -100.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds