Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46773 * 2 1 4 4 C 1.47199 * 109.47010 * 120.00018 * 2 1 3 5 5 N 2.60792 * 109.47183 * 120.00074 * 2 1 3 6 6 C 1.50696 * 109.47423 * 240.00288 * 2 1 3 7 7 O 1.21283 * 119.99982 * 252.12704 * 6 2 1 8 8 N 1.34776 * 120.00038 * 72.12070 * 6 2 1 9 9 C 1.46923 * 120.63172 * 4.48827 * 8 6 2 10 10 C 1.53170 * 108.76703 * 233.58613 * 9 8 6 11 11 C 1.53036 * 109.32827 * 305.35076 * 10 9 8 12 12 C 1.53048 * 109.52275 * 61.37515 * 11 10 9 13 13 C 1.46926 * 120.63173 * 184.46594 * 8 6 2 14 14 H 1.09007 * 109.70644 * 246.27583 * 13 8 6 15 15 C 1.53007 * 109.58665 * 6.62485 * 13 8 6 16 16 N 1.46496 * 109.46961 * 287.43087 * 15 13 8 17 17 C 1.34781 * 119.99722 * 185.94667 * 16 15 13 18 18 O 1.21280 * 119.99861 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99997 * 179.97438 * 17 16 15 20 20 S 1.80998 * 109.47210 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00264 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99620 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00115 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99628 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00222 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47143 * 89.99765 * 25 23 21 27 27 H 1.48493 * 109.47237 * 209.99677 * 25 23 21 28 28 H 1.48495 * 109.47052 * 330.00272 * 25 23 21 29 29 H 1.09002 * 109.46971 * 63.29065 * 1 2 3 30 30 H 1.08997 * 109.47204 * 183.29049 * 1 2 3 31 31 H 1.09002 * 109.47413 * 303.29696 * 1 2 3 32 32 H 1.09004 * 109.58650 * 353.37267 * 9 8 6 33 33 H 1.09003 * 109.58816 * 113.79813 * 9 8 6 34 34 H 1.08999 * 109.47797 * 185.40546 * 10 9 8 35 35 H 1.08997 * 109.50161 * 65.31957 * 10 9 8 36 36 H 1.09002 * 109.46543 * 301.36505 * 11 10 9 37 37 H 1.08997 * 109.46013 * 181.38302 * 11 10 9 38 38 H 1.09001 * 109.49645 * 58.58985 * 12 11 10 39 39 H 1.09001 * 109.49367 * 178.65825 * 12 11 10 40 40 H 1.08997 * 109.46781 * 47.43253 * 15 13 8 41 41 H 1.09000 * 109.47409 * 167.42871 * 15 13 8 42 42 H 0.97002 * 120.00637 * 5.94595 * 16 15 13 43 43 H 1.09003 * 109.46784 * 300.00170 * 19 17 16 44 44 H 1.09004 * 109.46992 * 59.99759 * 19 17 16 45 45 H 0.97006 * 119.99598 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1293 6 6 2.0324 -0.7103 -1.2304 7 8 2.5385 -1.8082 -1.1327 8 7 1.9192 -0.1257 -2.4395 9 6 1.3988 1.2427 -2.5636 10 6 0.2373 1.2396 -3.5620 11 6 0.7058 0.6236 -4.8822 12 6 1.1424 -0.8240 -4.6448 13 6 2.3143 -0.8444 -3.6585 14 1 3.1793 -0.3569 -4.1086 15 6 2.6656 -2.2921 -3.3093 16 7 3.9476 -2.3262 -2.6012 17 6 4.5188 -3.5088 -2.2983 18 8 3.9713 -4.5446 -2.6117 19 6 5.8379 -3.5440 -1.5703 20 16 6.3392 -5.2640 -1.3127 21 6 7.8645 -5.0148 -0.4667 22 1 8.2120 -4.0125 -0.2638 23 6 8.6196 -6.1065 -0.0611 24 7 9.7594 -5.9202 0.5705 25 14 8.0183 -7.8400 -0.4114 26 1 8.5359 -8.2865 -1.7298 27 1 8.5075 -8.7574 0.6488 28 1 6.5336 -7.8542 -0.4320 29 1 -0.3633 0.4619 -0.9180 30 1 -0.3633 -1.0259 0.0590 31 1 -0.3634 0.5642 0.8590 32 1 1.0450 1.5886 -1.5923 33 1 2.1882 1.9027 -2.9234 34 1 -0.0954 2.2629 -3.7358 35 1 -0.5875 0.6520 -3.1588 36 1 1.5467 1.1971 -5.2724 37 1 -0.1122 0.6427 -5.6024 38 1 0.3090 -1.3921 -4.2314 39 1 1.4535 -1.2697 -5.5896 40 1 1.8871 -2.7112 -2.6720 41 1 2.7406 -2.8788 -4.2249 42 1 4.3854 -1.4978 -2.3502 43 1 6.5943 -3.0305 -2.1639 44 1 5.7339 -3.0471 -0.6057 45 1 10.2873 -6.6832 0.8536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062334013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -14.839075 kcal Electronic energy + Delta-G solvation = -27770.660232 eV Core-core repulsion = 23915.859847 eV Total energy + Delta-G solvation = -3854.800385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40857 -38.77732 -38.10501 -36.76237 -35.03011 -33.81939 -32.71716 -32.33548 -31.77840 -29.34432 -26.95100 -25.59606 -25.42716 -24.77219 -22.98763 -21.63035 -20.32185 -19.74702 -18.00819 -17.86905 -17.45923 -16.43083 -16.04557 -16.01611 -15.53932 -15.14850 -15.02681 -14.94530 -14.85540 -14.36725 -14.07823 -13.83216 -13.47580 -13.36584 -13.29420 -13.08057 -12.96238 -12.80679 -12.71927 -12.54018 -12.51956 -12.17575 -11.89269 -11.75717 -11.61547 -11.50815 -11.23526 -11.16499 -11.11553 -10.91588 -10.45871 -9.76577 -9.62367 -9.20812 -9.11426 -8.90198 -8.36801 -8.35460 -6.77399 -6.19150 -3.88605 2.11460 2.12709 2.62149 2.81119 2.95019 3.33058 3.40509 3.48082 3.50333 3.60311 3.82922 3.93866 4.16522 4.28427 4.33383 4.38263 4.43181 4.47906 4.56404 4.67318 4.71759 4.91166 4.92040 4.94128 5.02257 5.10147 5.20042 5.21552 5.31325 5.33590 5.45451 5.47039 5.54295 5.55799 5.64483 5.78226 5.95005 5.96559 6.19075 6.21066 6.84519 6.85377 7.38395 7.75093 7.91883 8.04432 8.51728 8.83684 9.27664 10.90368 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.002964 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.691563 B = 9444.952027 C =10551.376475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.133 0.867 4 C 0.209 3.791 5 N -0.397 5.397 6 C 0.506 3.494 7 O -0.482 6.482 8 N -0.609 5.609 9 C 0.101 3.899 10 C -0.137 4.137 11 C -0.119 4.119 12 C -0.128 4.128 13 C 0.138 3.862 14 H 0.082 0.918 15 C 0.134 3.866 16 N -0.702 5.702 17 C 0.537 3.463 18 O -0.531 6.531 19 C -0.119 4.119 20 S -0.143 6.143 21 C -0.518 4.518 22 H 0.086 0.914 23 C 0.094 3.906 24 N -0.884 5.884 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.391 0.609 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.385 23.963 -11.068 35.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.150 0.850 4 C -0.111 4.111 5 N -0.072 5.072 6 C 0.290 3.710 7 O -0.353 6.353 8 N -0.345 5.345 9 C -0.022 4.022 10 C -0.176 4.176 11 C -0.157 4.157 12 C -0.167 4.167 13 C 0.035 3.965 14 H 0.100 0.900 15 C 0.010 3.990 16 N -0.355 5.355 17 C 0.322 3.678 18 O -0.407 6.407 19 C -0.270 4.270 20 S 0.083 5.917 21 C -0.666 4.666 22 H 0.104 0.896 23 C -0.114 4.114 24 N -0.521 5.521 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.225 0.775 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.283 20.726 -10.028 33.464 hybrid contribution 0.741 1.263 0.149 1.472 sum -23.542 21.989 -9.880 33.695 Atomic orbital electron populations 1.21860 0.89678 1.04614 1.04191 1.18831 0.98719 0.99812 0.86062 0.84961 1.28036 0.94456 0.94371 0.94211 1.81288 1.06873 1.06970 1.12033 1.20115 0.80013 0.87042 0.83807 1.91108 1.40215 1.19065 1.84959 1.48021 1.65371 1.15625 1.05487 1.21922 0.96752 0.82601 1.00925 1.21954 0.97918 1.01893 0.95798 1.21507 1.01475 0.95579 0.97123 1.21910 0.98011 0.97570 0.99232 1.21570 0.97442 0.92987 0.84521 0.89965 1.21340 0.88039 0.93381 0.96265 1.45681 1.21900 1.08109 1.59828 1.19984 0.85986 0.83254 0.78527 1.90656 1.64325 1.32633 1.53046 1.23226 0.96607 1.04394 1.02790 1.84718 1.27757 1.03176 1.76015 1.22351 1.04453 0.97591 1.42160 0.89563 1.24713 0.93954 0.99259 0.93468 1.69952 1.12629 1.31725 1.37755 0.86722 0.82268 0.83992 0.78825 1.19237 1.20037 1.15874 0.89889 0.90842 0.90233 0.89157 0.90675 0.90403 0.91106 0.91501 0.91280 0.90875 0.90078 0.90149 0.91544 0.77529 0.89106 0.88956 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 8.77 37.16 0.33 -0.19 16 2 C -0.01 -0.06 2.24 -94.56 -0.21 -0.27 16 3 H 0.13 0.31 7.07 -51.93 -0.37 -0.06 16 4 C 0.21 2.43 13.92 -20.76 -0.29 2.14 16 5 N -0.40 -6.28 18.54 42.15 0.78 -5.50 16 6 C 0.51 4.35 6.51 -10.99 -0.07 4.28 16 7 O -0.48 -6.74 9.76 5.55 0.05 -6.69 16 8 N -0.61 -3.40 2.97 -165.23 -0.49 -3.89 16 9 C 0.10 0.20 5.54 -3.72 -0.02 0.18 16 10 C -0.14 -0.22 5.98 -26.62 -0.16 -0.38 16 11 C -0.12 -0.33 5.89 -26.69 -0.16 -0.48 16 12 C -0.13 -0.61 5.34 -26.61 -0.14 -0.75 16 13 C 0.14 0.93 2.91 -67.60 -0.20 0.73 16 14 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 15 C 0.13 1.59 4.31 -4.04 -0.02 1.57 16 16 N -0.70 -10.33 3.16 -60.29 -0.19 -10.52 16 17 C 0.54 10.93 7.58 -10.98 -0.08 10.85 16 18 O -0.53 -12.81 15.85 5.56 0.09 -12.72 16 19 C -0.12 -2.65 6.16 36.01 0.22 -2.42 16 20 S -0.14 -3.96 18.55 -107.50 -1.99 -5.96 16 21 C -0.52 -15.96 10.04 30.94 0.31 -15.65 16 22 H 0.09 2.77 8.03 -52.48 -0.42 2.35 16 23 C 0.09 2.91 5.50 -17.43 -0.10 2.82 16 24 N -0.88 -27.98 13.97 55.49 0.78 -27.21 16 25 Si 0.86 23.08 27.74 -169.99 -4.71 18.37 16 26 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.23 -6.38 6.74 56.52 0.38 -6.00 16 29 H 0.08 0.11 5.82 -51.93 -0.30 -0.19 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.01 4.70 -51.93 -0.24 -0.24 16 33 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.07 0.14 7.66 -51.93 -0.40 -0.26 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 1.14 6.39 -51.93 -0.33 0.81 16 41 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.39 4.93 7.95 -40.82 -0.32 4.60 16 43 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 44 H 0.09 2.03 8.14 -51.91 -0.42 1.61 16 45 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -41.58 375.74 -7.23 -48.81 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.61 Total: -2.76 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.59 Total: 2.40 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.88 Total: -47.11 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.14 Total: -19.41 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.37 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -1.99 Total: -5.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -41.58 -7.23 -48.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062334013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.968 kcal (2) G-P(sol) polarization free energy of solvation -41.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds