Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46773 * 2 1 4 4 C 1.47199 * 109.47010 * 120.00018 * 2 1 3 5 5 N 2.60792 * 109.47183 * 120.00074 * 2 1 3 6 6 C 1.50696 * 109.47423 * 240.00288 * 2 1 3 7 7 O 1.21283 * 119.99982 * 252.12704 * 6 2 1 8 8 N 1.34776 * 120.00038 * 72.12070 * 6 2 1 9 9 C 1.46923 * 120.63172 * 4.48827 * 8 6 2 10 10 C 1.53170 * 108.76703 * 233.58613 * 9 8 6 11 11 C 1.53036 * 109.32827 * 305.35076 * 10 9 8 12 12 C 1.53048 * 109.52275 * 61.37515 * 11 10 9 13 13 C 1.46926 * 120.63173 * 184.46594 * 8 6 2 14 14 H 1.09007 * 109.70644 * 246.27583 * 13 8 6 15 15 C 1.53007 * 109.58665 * 6.62485 * 13 8 6 16 16 N 1.46496 * 109.46961 * 287.43087 * 15 13 8 17 17 C 1.34781 * 119.99722 * 185.94667 * 16 15 13 18 18 O 1.21280 * 119.99861 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99997 * 179.97438 * 17 16 15 20 20 S 1.80998 * 109.47210 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00264 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99620 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00115 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99628 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00222 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47143 * 89.99765 * 25 23 21 27 27 H 1.48493 * 109.47237 * 209.99677 * 25 23 21 28 28 H 1.48495 * 109.47052 * 330.00272 * 25 23 21 29 29 H 1.09002 * 109.46971 * 63.29065 * 1 2 3 30 30 H 1.08997 * 109.47204 * 183.29049 * 1 2 3 31 31 H 1.09002 * 109.47413 * 303.29696 * 1 2 3 32 32 H 1.09004 * 109.58650 * 353.37267 * 9 8 6 33 33 H 1.09003 * 109.58816 * 113.79813 * 9 8 6 34 34 H 1.08999 * 109.47797 * 185.40546 * 10 9 8 35 35 H 1.08997 * 109.50161 * 65.31957 * 10 9 8 36 36 H 1.09002 * 109.46543 * 301.36505 * 11 10 9 37 37 H 1.08997 * 109.46013 * 181.38302 * 11 10 9 38 38 H 1.09001 * 109.49645 * 58.58985 * 12 11 10 39 39 H 1.09001 * 109.49367 * 178.65825 * 12 11 10 40 40 H 1.08997 * 109.46781 * 47.43253 * 15 13 8 41 41 H 1.09000 * 109.47409 * 167.42871 * 15 13 8 42 42 H 0.97002 * 120.00637 * 5.94595 * 16 15 13 43 43 H 1.09003 * 109.46784 * 300.00170 * 19 17 16 44 44 H 1.09004 * 109.46992 * 59.99759 * 19 17 16 45 45 H 0.97006 * 119.99598 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1293 6 6 2.0324 -0.7103 -1.2304 7 8 2.5385 -1.8082 -1.1327 8 7 1.9192 -0.1257 -2.4395 9 6 1.3988 1.2427 -2.5636 10 6 0.2373 1.2396 -3.5620 11 6 0.7058 0.6236 -4.8822 12 6 1.1424 -0.8240 -4.6448 13 6 2.3143 -0.8444 -3.6585 14 1 3.1793 -0.3569 -4.1086 15 6 2.6656 -2.2921 -3.3093 16 7 3.9476 -2.3262 -2.6012 17 6 4.5188 -3.5088 -2.2983 18 8 3.9713 -4.5446 -2.6117 19 6 5.8379 -3.5440 -1.5703 20 16 6.3392 -5.2640 -1.3127 21 6 7.8645 -5.0148 -0.4667 22 1 8.2120 -4.0125 -0.2638 23 6 8.6196 -6.1065 -0.0611 24 7 9.7594 -5.9202 0.5705 25 14 8.0183 -7.8400 -0.4114 26 1 8.5359 -8.2865 -1.7298 27 1 8.5075 -8.7574 0.6488 28 1 6.5336 -7.8542 -0.4320 29 1 -0.3633 0.4619 -0.9180 30 1 -0.3633 -1.0259 0.0590 31 1 -0.3634 0.5642 0.8590 32 1 1.0450 1.5886 -1.5923 33 1 2.1882 1.9027 -2.9234 34 1 -0.0954 2.2629 -3.7358 35 1 -0.5875 0.6520 -3.1588 36 1 1.5467 1.1971 -5.2724 37 1 -0.1122 0.6427 -5.6024 38 1 0.3090 -1.3921 -4.2314 39 1 1.4535 -1.2697 -5.5896 40 1 1.8871 -2.7112 -2.6720 41 1 2.7406 -2.8788 -4.2249 42 1 4.3854 -1.4978 -2.3502 43 1 6.5943 -3.0305 -2.1639 44 1 5.7339 -3.0471 -0.6057 45 1 10.2873 -6.6832 0.8536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062334013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -45.660863 kcal Electronic energy + Delta-G solvation = -27771.996765 eV Core-core repulsion = 23915.859847 eV Total energy + Delta-G solvation = -3856.136918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07953 -40.26356 -38.68381 -37.65585 -36.05590 -34.73061 -34.56898 -33.29430 -32.51481 -30.80271 -27.97884 -27.56577 -26.06342 -25.25928 -23.58407 -22.16807 -21.65102 -20.42641 -19.90044 -18.51974 -18.39727 -17.60261 -17.30878 -17.06834 -17.00223 -16.45045 -16.21843 -15.71700 -15.43149 -15.37335 -15.16285 -14.99411 -14.72688 -14.54712 -14.22707 -14.09879 -13.98694 -13.69815 -13.67792 -13.41129 -13.33626 -13.13810 -13.07545 -13.00803 -12.70718 -12.65498 -12.40894 -12.07514 -11.92787 -11.82102 -11.49025 -11.39749 -11.21641 -10.95290 -10.60095 -10.28500 -9.90989 -9.43736 -9.04429 -8.56835 -6.27788 0.95119 1.26144 1.40362 1.42852 1.46662 1.53309 1.71169 1.76937 2.13059 2.20956 2.36169 2.69651 2.80923 2.81405 3.38152 3.74954 3.88182 3.91574 3.96231 4.07727 4.10134 4.15710 4.23943 4.27392 4.36250 4.37196 4.56723 4.70180 4.74932 4.78009 4.86313 4.90611 5.01505 5.08027 5.17493 5.26003 5.31537 5.38030 5.56163 5.61880 5.64836 5.65396 6.04567 6.31219 6.54230 6.55585 6.87927 7.13403 7.32307 8.56153 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.002964 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.691563 B = 9444.952027 C =10551.376475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.185 0.815 4 C 0.237 3.763 5 N -0.485 5.485 6 C 0.504 3.496 7 O -0.549 6.549 8 N -0.596 5.596 9 C 0.092 3.908 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.124 4.124 13 C 0.146 3.854 14 H 0.099 0.901 15 C 0.134 3.866 16 N -0.672 5.672 17 C 0.535 3.465 18 O -0.577 6.577 19 C -0.105 4.105 20 S -0.174 6.174 21 C -0.531 4.531 22 H 0.058 0.942 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.917 3.083 26 H -0.256 1.256 27 H -0.255 1.255 28 H -0.243 1.243 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.404 0.596 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.525 27.159 -12.878 40.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.202 0.798 4 C -0.081 4.081 5 N -0.160 5.160 6 C 0.290 3.710 7 O -0.426 6.426 8 N -0.330 5.330 9 C -0.029 4.029 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.163 4.163 13 C 0.043 3.957 14 H 0.117 0.883 15 C 0.011 3.989 16 N -0.322 5.322 17 C 0.320 3.680 18 O -0.457 6.457 19 C -0.257 4.257 20 S 0.052 5.948 21 C -0.679 4.679 22 H 0.076 0.924 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.738 3.262 26 H -0.180 1.180 27 H -0.179 1.179 28 H -0.167 1.167 29 H 0.133 0.867 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.239 0.761 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.449 24.039 -11.866 37.660 hybrid contribution 1.313 0.492 0.631 1.538 sum -25.136 24.531 -11.235 36.875 Atomic orbital electron populations 1.21930 0.87285 1.03835 1.06781 1.19275 1.00331 1.01048 0.82297 0.79840 1.29112 0.92235 0.92588 0.94176 1.81299 1.09848 1.09758 1.15141 1.20536 0.79099 0.86228 0.85137 1.91090 1.43696 1.21934 1.85905 1.48095 1.64058 1.16868 1.04017 1.22344 0.97563 0.80135 1.02844 1.21968 0.97491 1.03111 0.94693 1.21512 1.01974 0.93729 0.98204 1.21893 0.96612 0.99465 0.98344 1.21498 0.99094 0.89716 0.85404 0.88307 1.21450 0.85668 0.97145 0.94634 1.45473 1.22213 1.06701 1.57824 1.19677 0.85367 0.84331 0.78632 1.90631 1.65256 1.34407 1.55408 1.23198 0.98551 1.00368 1.03541 1.84625 1.26178 1.08380 1.75594 1.22455 1.05967 0.96599 1.42850 0.92419 1.25588 0.94069 1.03186 0.93134 1.70021 1.13637 1.33406 1.38416 0.85838 0.81252 0.79412 0.79695 1.18019 1.17920 1.16671 0.86684 0.93346 0.88255 0.86465 0.88879 0.88076 0.91236 0.90729 0.90730 0.91849 0.90077 0.92593 0.92398 0.76055 0.87138 0.89110 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.53 8.77 71.98 0.63 0.10 16 2 C -0.01 -0.05 2.24 -13.35 -0.03 -0.08 16 3 H 0.18 -0.14 7.07 -2.38 -0.02 -0.16 16 4 C 0.24 5.44 13.92 89.44 1.24 6.69 16 5 N -0.48 -16.01 18.54 20.00 0.37 -15.64 16 6 C 0.50 7.70 6.51 87.66 0.57 8.27 16 7 O -0.55 -15.47 9.76 -3.04 -0.03 -15.50 16 8 N -0.60 -4.68 2.97 -795.06 -2.36 -7.04 16 9 C 0.09 -0.14 5.54 86.36 0.48 0.34 16 10 C -0.13 0.27 5.98 30.66 0.18 0.45 16 11 C -0.12 -0.16 5.89 30.62 0.18 0.02 16 12 C -0.12 -0.88 5.34 30.67 0.16 -0.72 16 13 C 0.15 1.63 2.91 44.98 0.13 1.76 16 14 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 15 C 0.13 3.16 4.31 86.38 0.37 3.54 16 16 N -0.67 -19.69 3.16 -463.05 -1.46 -21.15 16 17 C 0.53 22.29 7.58 87.66 0.66 22.95 16 18 O -0.58 -28.81 15.85 -3.03 -0.05 -28.85 16 19 C -0.11 -4.78 6.16 71.24 0.44 -4.34 16 20 S -0.17 -9.90 18.55 -56.49 -1.05 -10.95 16 21 C -0.53 -33.72 10.04 67.95 0.68 -33.04 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 23 C 0.05 2.86 5.50 84.86 0.47 3.33 16 24 N -0.92 -58.93 13.97 21.65 0.30 -58.63 16 25 Si 0.92 48.22 27.74 68.60 1.90 50.12 16 26 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.24 -13.00 6.74 99.48 0.67 -12.33 16 29 H 0.11 -0.28 5.82 -2.39 -0.01 -0.29 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.12 -0.77 4.70 -2.39 -0.01 -0.78 16 33 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.07 -0.07 7.66 -2.39 -0.02 -0.09 16 36 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 1.65 6.39 -2.39 -0.02 1.64 16 41 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 42 H 0.40 9.76 7.95 -92.71 -0.74 9.03 16 43 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 44 H 0.09 4.13 8.14 -2.39 -0.02 4.11 16 45 H 0.28 16.43 8.31 -92.70 -0.77 15.66 16 Total: -1.00 -98.14 375.74 4.05 -94.09 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.24 Total: 4.27 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.18 Total: 9.27 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -3.15 Total: -102.46 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.08 Total: -44.35 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.90 Total: 50.12 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.05 Total: -10.95 kcal Total: -98.14 4.05 -94.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062334013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.431 kcal (2) G-P(sol) polarization free energy of solvation -98.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds