Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.47201 * 109.47145 * 119.99961 * 2 1 3 5 5 N 2.60795 * 109.47166 * 120.00009 * 2 1 3 6 6 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 7 7 O 1.21279 * 119.99507 * 240.00171 * 6 2 1 8 8 N 1.34774 * 120.00020 * 59.99861 * 6 2 1 9 9 C 1.47602 * 118.64269 * 359.73442 * 8 6 2 10 10 C 1.54303 * 111.94164 * 137.78173 * 9 8 6 11 11 C 1.50879 * 110.23165 * 319.69634 * 10 9 8 12 12 C 1.52568 * 109.35892 * 91.80154 * 11 10 9 13 13 H 1.08995 * 108.51210 * 36.23925 * 12 11 10 14 14 N 1.46502 * 108.51448 * 153.73340 * 12 11 10 15 15 C 1.34776 * 120.00307 * 209.76794 * 14 12 11 16 16 O 1.21290 * 119.99393 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00045 * 179.97438 * 15 14 12 18 18 S 1.81008 * 109.46689 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99652 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00419 * 0.02562 * 19 18 17 21 21 C 1.38804 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00414 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99617 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46862 * 90.00396 * 23 21 19 25 25 H 1.48491 * 109.47163 * 209.99889 * 23 21 19 26 26 H 1.48495 * 109.47460 * 330.00537 * 23 21 19 27 27 C 1.47091 * 114.32795 * 274.98691 * 12 11 10 28 28 C 1.44577 * 118.64101 * 180.02562 * 8 6 2 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 32 32 H 1.09000 * 108.94540 * 258.57317 * 9 8 6 33 33 H 1.08999 * 108.95116 * 17.20500 * 9 8 6 34 34 H 1.09001 * 109.36285 * 199.42044 * 10 9 8 35 35 H 1.08999 * 109.22482 * 79.88638 * 10 9 8 36 36 H 1.09002 * 109.49152 * 331.83639 * 11 10 9 37 37 H 1.08997 * 109.50876 * 211.78006 * 11 10 9 38 38 H 0.96998 * 119.99694 * 29.76327 * 14 12 11 39 39 H 1.08998 * 109.47018 * 299.99663 * 17 15 14 40 40 H 1.08997 * 109.46955 * 60.00171 * 17 15 14 41 41 H 0.97001 * 120.00117 * 179.97438 * 22 21 19 42 42 H 1.09009 * 109.32795 * 302.54236 * 27 12 11 43 43 H 1.08999 * 109.33175 * 183.06227 * 27 12 11 44 44 H 1.09002 * 109.44940 * 30.74999 * 28 8 6 45 45 H 1.09003 * 109.45084 * 150.66176 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.7295 -1.6965 -1.1192 8 7 1.7067 -0.2500 -2.4546 9 6 0.8516 0.9489 -2.5552 10 6 1.3441 1.9182 -3.6501 11 6 2.8505 2.0011 -3.6345 12 6 3.4239 0.9668 -4.5984 13 1 2.7640 0.8962 -5.4630 14 7 4.7346 1.4343 -5.0566 15 6 5.1828 1.0904 -6.2802 16 8 4.5012 0.3934 -7.0019 17 6 6.5307 1.5717 -6.7517 18 16 6.8447 0.9462 -8.4210 19 6 8.4372 1.6410 -8.7135 20 1 8.9099 2.2469 -7.9546 21 6 9.0845 1.4097 -9.9195 22 7 10.2744 1.9283 -10.1378 23 14 8.2674 0.3613 -11.2319 24 1 7.4518 1.2276 -12.1207 25 1 9.3093 -0.3289 -12.0338 26 1 7.3913 -0.6481 -10.5848 27 6 3.5830 -0.3768 -4.0213 28 6 2.2042 -0.9545 -3.6149 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.1676 0.6383 -2.7850 33 1 0.8542 1.4670 -1.5962 34 1 0.9257 2.9086 -3.4708 35 1 1.0119 1.5583 -4.6239 36 1 3.2153 1.8008 -2.6270 37 1 3.1634 2.9985 -3.9430 38 1 5.2798 1.9914 -4.4793 39 1 6.5437 2.6616 -6.7633 40 1 7.3038 1.2063 -6.0758 41 1 10.7268 1.7664 -10.9805 42 1 4.2231 -0.3179 -3.1409 43 1 4.0463 -1.0333 -4.7578 44 1 2.3090 -2.0135 -3.3792 45 1 1.5028 -0.8347 -4.4407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -38.100073 kcal Electronic energy + Delta-G solvation = -26900.270634 eV Core-core repulsion = 23044.461577 eV Total energy + Delta-G solvation = -3855.809058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31417 -39.71169 -37.92750 -36.94108 -35.51382 -33.99379 -33.11911 -32.45025 -31.79887 -29.18069 -27.38587 -25.74166 -25.67541 -25.33861 -22.70781 -21.07626 -20.56170 -20.05311 -18.09896 -17.93156 -17.82207 -16.81905 -16.52485 -16.27151 -15.68900 -15.28754 -15.12320 -14.98919 -14.85618 -14.40751 -14.12301 -13.97997 -13.69507 -13.59001 -13.35619 -13.20345 -13.00671 -12.86910 -12.80682 -12.62612 -12.34159 -12.17306 -12.05615 -11.89318 -11.83031 -11.38240 -11.27602 -11.18982 -11.02424 -10.95940 -10.59606 -10.24725 -9.86843 -9.56188 -9.26825 -9.02204 -8.94358 -8.51754 -6.93088 -6.29930 -4.01765 1.97096 2.01125 2.35992 2.65373 2.74506 2.94570 3.26608 3.28068 3.32380 3.49373 3.62476 3.78936 4.05510 4.18678 4.29329 4.31940 4.34355 4.50737 4.54011 4.70617 4.76495 4.85171 4.88815 4.96731 5.04620 5.09082 5.11265 5.16083 5.31878 5.32399 5.37106 5.39143 5.48697 5.70146 5.72406 5.75938 5.83923 5.99705 6.09334 6.16914 6.54230 6.70916 7.11202 7.57184 7.58535 7.93058 8.40607 8.46304 9.16168 10.79284 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.002093 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.052357 B =13374.318230 C =13650.751492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.013 4.013 3 H 0.140 0.860 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.518 3.482 7 O -0.521 6.521 8 N -0.598 5.598 9 C 0.096 3.904 10 C -0.132 4.132 11 C -0.125 4.125 12 C 0.148 3.852 13 H 0.085 0.915 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.125 4.125 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.146 4.146 28 C 0.121 3.879 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.751 2.884 19.389 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.037 4.037 3 H 0.157 0.843 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.303 3.697 7 O -0.396 6.396 8 N -0.331 5.331 9 C -0.026 4.026 10 C -0.171 4.171 11 C -0.163 4.163 12 C 0.044 3.956 13 H 0.103 0.897 14 N -0.391 5.391 15 C 0.318 3.682 16 O -0.394 6.394 17 C -0.276 4.276 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.185 4.185 28 C -0.003 4.003 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.781 0.401 19.479 31.523 hybrid contribution 1.014 1.071 -0.003 1.475 sum -23.767 1.472 19.476 30.763 Atomic orbital electron populations 1.22148 0.89595 1.04791 1.05107 1.18857 0.98903 1.00134 0.85827 0.84258 1.28045 0.93928 0.94049 0.93978 1.81214 1.07487 1.07654 1.12064 1.20073 0.80640 0.84792 0.84232 1.90815 1.36882 1.25846 1.86098 1.47669 1.51055 1.28773 1.05593 1.22501 0.93792 0.85519 1.00770 1.21794 0.95909 0.99704 0.99670 1.21379 0.95458 0.99441 1.00005 1.19929 0.85335 0.92931 0.97451 0.89721 1.46243 1.20167 1.55199 1.17512 1.20286 0.87657 0.79570 0.80724 1.90691 1.57624 1.36633 1.54497 1.23288 0.96197 1.04658 1.03421 1.84769 1.25059 1.69027 1.12680 1.22317 1.01289 1.37284 1.06035 0.89411 1.24724 0.94189 0.94880 0.97578 1.69936 1.13153 1.43261 1.25311 0.86728 0.80331 0.82211 0.82532 1.19217 1.19951 1.15923 1.21615 0.97655 0.97216 1.02040 1.21445 0.94858 0.97151 0.86822 0.88835 0.90899 0.90126 0.90533 0.89166 0.89627 0.90595 0.91203 0.90448 0.76808 0.88575 0.88535 0.91935 0.91308 0.89649 0.89174 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.23 8.65 37.16 0.32 0.09 16 2 C -0.01 -0.05 2.28 -94.56 -0.22 -0.27 16 3 H 0.14 0.12 7.42 -51.93 -0.39 -0.27 16 4 C 0.22 1.92 13.88 -20.76 -0.29 1.64 16 5 N -0.41 -4.96 18.54 42.15 0.78 -4.18 16 6 C 0.52 3.87 7.01 -10.98 -0.08 3.79 16 7 O -0.52 -6.60 15.46 5.56 0.09 -6.52 16 8 N -0.60 -3.25 2.23 -172.28 -0.38 -3.64 16 9 C 0.10 0.17 4.47 -2.76 -0.01 0.16 16 10 C -0.13 -0.39 5.71 -27.11 -0.15 -0.54 16 11 C -0.12 -0.66 5.00 -28.02 -0.14 -0.80 16 12 C 0.15 1.35 1.96 -70.99 -0.14 1.21 16 13 H 0.08 0.92 6.65 -51.93 -0.35 0.57 16 14 N -0.74 -8.38 4.88 -56.82 -0.28 -8.66 16 15 C 0.53 8.84 7.69 -10.99 -0.08 8.75 16 16 O -0.52 -10.49 15.36 5.55 0.09 -10.41 16 17 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 18 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 19 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 20 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 21 C 0.09 2.77 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 23 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 C -0.15 -1.43 5.19 -28.56 -0.15 -1.58 16 28 C 0.12 0.92 5.38 -4.06 -0.02 0.90 16 29 H 0.09 -0.06 4.58 -51.93 -0.24 -0.30 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.08 0.03 7.57 -51.93 -0.39 -0.36 16 33 H 0.09 -0.05 4.85 -51.93 -0.25 -0.30 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.08 0.30 7.32 -51.93 -0.38 -0.08 16 36 H 0.07 0.34 7.49 -51.93 -0.39 -0.05 16 37 H 0.08 0.41 8.05 -51.93 -0.42 -0.01 16 38 H 0.40 3.54 8.61 -40.82 -0.35 3.19 16 39 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 44 H 0.09 0.84 7.30 -51.93 -0.38 0.46 16 45 H 0.08 0.53 8.07 -51.93 -0.42 0.12 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -38.86 377.64 -6.95 -45.81 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.48 Total: -3.11 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.52 Total: -0.70 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.89 Total: -42.17 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.17 Total: -16.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.86 -6.95 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.706 kcal (2) G-P(sol) polarization free energy of solvation -38.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds