Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.47201 * 109.47145 * 119.99961 * 2 1 3 5 5 N 2.60795 * 109.47166 * 120.00009 * 2 1 3 6 6 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 7 7 O 1.21279 * 119.99507 * 240.00171 * 6 2 1 8 8 N 1.34774 * 120.00020 * 59.99861 * 6 2 1 9 9 C 1.47602 * 118.64269 * 359.73442 * 8 6 2 10 10 C 1.54303 * 111.94164 * 137.78173 * 9 8 6 11 11 C 1.50879 * 110.23165 * 319.69634 * 10 9 8 12 12 C 1.52568 * 109.35892 * 91.80154 * 11 10 9 13 13 H 1.08995 * 108.51210 * 36.23925 * 12 11 10 14 14 N 1.46502 * 108.51448 * 153.73340 * 12 11 10 15 15 C 1.34776 * 120.00307 * 209.76794 * 14 12 11 16 16 O 1.21290 * 119.99393 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00045 * 179.97438 * 15 14 12 18 18 S 1.81008 * 109.46689 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99652 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00419 * 0.02562 * 19 18 17 21 21 C 1.38804 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00414 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99617 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46862 * 90.00396 * 23 21 19 25 25 H 1.48491 * 109.47163 * 209.99889 * 23 21 19 26 26 H 1.48495 * 109.47460 * 330.00537 * 23 21 19 27 27 C 1.47091 * 114.32795 * 274.98691 * 12 11 10 28 28 C 1.44577 * 118.64101 * 180.02562 * 8 6 2 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 32 32 H 1.09000 * 108.94540 * 258.57317 * 9 8 6 33 33 H 1.08999 * 108.95116 * 17.20500 * 9 8 6 34 34 H 1.09001 * 109.36285 * 199.42044 * 10 9 8 35 35 H 1.08999 * 109.22482 * 79.88638 * 10 9 8 36 36 H 1.09002 * 109.49152 * 331.83639 * 11 10 9 37 37 H 1.08997 * 109.50876 * 211.78006 * 11 10 9 38 38 H 0.96998 * 119.99694 * 29.76327 * 14 12 11 39 39 H 1.08998 * 109.47018 * 299.99663 * 17 15 14 40 40 H 1.08997 * 109.46955 * 60.00171 * 17 15 14 41 41 H 0.97001 * 120.00117 * 179.97438 * 22 21 19 42 42 H 1.09009 * 109.32795 * 302.54236 * 27 12 11 43 43 H 1.08999 * 109.33175 * 183.06227 * 27 12 11 44 44 H 1.09002 * 109.44940 * 30.74999 * 28 8 6 45 45 H 1.09003 * 109.45084 * 150.66176 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.7295 -1.6965 -1.1192 8 7 1.7067 -0.2500 -2.4546 9 6 0.8516 0.9489 -2.5552 10 6 1.3441 1.9182 -3.6501 11 6 2.8505 2.0011 -3.6345 12 6 3.4239 0.9668 -4.5984 13 1 2.7640 0.8962 -5.4630 14 7 4.7346 1.4343 -5.0566 15 6 5.1828 1.0904 -6.2802 16 8 4.5012 0.3934 -7.0019 17 6 6.5307 1.5717 -6.7517 18 16 6.8447 0.9462 -8.4210 19 6 8.4372 1.6410 -8.7135 20 1 8.9099 2.2469 -7.9546 21 6 9.0845 1.4097 -9.9195 22 7 10.2744 1.9283 -10.1378 23 14 8.2674 0.3613 -11.2319 24 1 7.4518 1.2276 -12.1207 25 1 9.3093 -0.3289 -12.0338 26 1 7.3913 -0.6481 -10.5848 27 6 3.5830 -0.3768 -4.0213 28 6 2.2042 -0.9545 -3.6149 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.1676 0.6383 -2.7850 33 1 0.8542 1.4670 -1.5962 34 1 0.9257 2.9086 -3.4708 35 1 1.0119 1.5583 -4.6239 36 1 3.2153 1.8008 -2.6270 37 1 3.1634 2.9985 -3.9430 38 1 5.2798 1.9914 -4.4793 39 1 6.5437 2.6616 -6.7633 40 1 7.3038 1.2063 -6.0758 41 1 10.7268 1.7664 -10.9805 42 1 4.2231 -0.3179 -3.1409 43 1 4.0463 -1.0333 -4.7578 44 1 2.3090 -2.0135 -3.3792 45 1 1.5028 -0.8347 -4.4407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065876679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = -66.843473 kcal Electronic energy + Delta-G solvation = -26901.517042 eV Core-core repulsion = 23044.461577 eV Total energy + Delta-G solvation = -3857.055465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89541 -40.79566 -38.73038 -37.64743 -36.30411 -34.68353 -34.57516 -33.65895 -32.67166 -30.47254 -27.95345 -27.77162 -26.12944 -25.91925 -23.30218 -21.74566 -21.66965 -20.63011 -19.86180 -18.53016 -18.45274 -17.87711 -17.38127 -17.25449 -17.05705 -16.49915 -16.22665 -15.77414 -15.66138 -15.35541 -15.10720 -14.94853 -14.80502 -14.55487 -14.26477 -14.15027 -13.85414 -13.63013 -13.48406 -13.35682 -13.32395 -13.20608 -13.01373 -12.87118 -12.60935 -12.43196 -12.33848 -12.27753 -11.89137 -11.85986 -11.67686 -11.53344 -11.17555 -10.92230 -10.81312 -10.54230 -10.17065 -9.64740 -8.99741 -8.52176 -6.22821 0.99476 1.30713 1.41198 1.45429 1.47068 1.56479 1.59764 1.72320 2.14722 2.23268 2.28226 2.71703 2.79195 2.85959 3.39353 3.62298 3.83410 3.94315 3.99818 4.05380 4.12201 4.14205 4.23338 4.27583 4.38804 4.43097 4.47242 4.62096 4.75134 4.79398 4.84747 4.91349 5.00616 5.04848 5.13612 5.22711 5.33161 5.33494 5.43531 5.55028 5.64068 5.69914 6.10591 6.24311 6.50199 6.51057 6.92909 7.05711 7.23057 8.60196 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.002093 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.052357 B =13374.318230 C =13650.751492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.006 4.006 3 H 0.188 0.812 4 C 0.241 3.759 5 N -0.481 5.481 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.588 5.588 9 C 0.086 3.914 10 C -0.130 4.130 11 C -0.119 4.119 12 C 0.148 3.852 13 H 0.070 0.930 14 N -0.715 5.715 15 C 0.535 3.465 16 O -0.560 6.560 17 C -0.113 4.113 18 S -0.174 6.174 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.916 3.084 24 H -0.260 1.260 25 H -0.260 1.260 26 H -0.238 1.238 27 C -0.138 4.138 28 C 0.128 3.872 29 H 0.124 0.876 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.277 0.723 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.967 5.002 20.339 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 H 0.205 0.795 4 C -0.077 4.077 5 N -0.157 5.157 6 C 0.301 3.699 7 O -0.465 6.465 8 N -0.319 5.319 9 C -0.034 4.034 10 C -0.168 4.168 11 C -0.157 4.157 12 C 0.045 3.955 13 H 0.089 0.911 14 N -0.368 5.368 15 C 0.321 3.679 16 O -0.438 6.438 17 C -0.264 4.264 18 S 0.052 5.948 19 C -0.677 4.677 20 H 0.079 0.921 21 C -0.162 4.162 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.184 1.184 25 H -0.185 1.185 26 H -0.161 1.161 27 C -0.178 4.178 28 C 0.003 3.997 29 H 0.143 0.857 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.250 0.750 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -28.030 2.580 20.468 34.803 hybrid contribution 1.987 0.479 -0.200 2.054 sum -26.042 3.060 20.268 33.141 Atomic orbital electron populations 1.22253 0.86838 1.04594 1.07580 1.19245 1.00777 1.01075 0.81884 0.79530 1.28961 0.92123 0.92635 0.93995 1.81223 1.09896 1.09854 1.14684 1.20655 0.79626 0.84082 0.85504 1.90803 1.39911 1.28795 1.87021 1.47718 1.50565 1.29452 1.04139 1.22958 0.94027 0.83924 1.02485 1.21818 0.93791 1.01570 0.99604 1.21388 0.97243 0.97971 0.99068 1.20201 0.83621 0.93776 0.97951 0.91144 1.46114 1.21108 1.53885 1.15673 1.19907 0.86572 0.79373 0.82085 1.90680 1.58412 1.38659 1.56095 1.23295 0.98170 1.05573 0.99385 1.84673 1.22652 1.69632 1.17838 1.22470 1.02924 1.36798 1.05519 0.92070 1.25594 0.94771 0.96074 0.99719 1.70016 1.14466 1.44682 1.26330 0.85847 0.79677 0.80717 0.80009 1.18446 1.18472 1.16145 1.21487 0.98687 0.97164 1.00456 1.21207 0.94086 0.96147 0.88237 0.85741 0.92571 0.88204 0.87925 0.85535 0.86558 0.91653 0.90112 0.89710 0.74989 0.86800 0.87475 0.91376 0.92303 0.93391 0.91501 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 8.65 71.98 0.62 0.88 16 2 C -0.01 -0.03 2.28 -13.34 -0.03 -0.06 16 3 H 0.19 -0.82 7.42 -2.39 -0.02 -0.84 16 4 C 0.24 3.95 13.88 89.44 1.24 5.19 16 5 N -0.48 -11.83 18.54 20.01 0.37 -11.46 16 6 C 0.51 6.69 7.01 87.66 0.61 7.30 16 7 O -0.59 -15.11 15.46 -3.02 -0.05 -15.16 16 8 N -0.59 -4.73 2.23 -817.37 -1.82 -6.55 16 9 C 0.09 -0.16 4.47 86.61 0.39 0.22 16 10 C -0.13 -0.10 5.71 30.35 0.17 0.08 16 11 C -0.12 -0.78 5.00 29.76 0.15 -0.63 16 12 C 0.15 2.45 1.96 43.01 0.08 2.54 16 13 H 0.07 1.44 6.65 -2.39 -0.02 1.42 16 14 N -0.71 -15.17 4.88 -452.05 -2.21 -17.38 16 15 C 0.54 17.49 7.69 87.66 0.67 18.16 16 16 O -0.56 -22.76 15.36 -3.06 -0.05 -22.80 16 17 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 18 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 19 C -0.53 -30.85 10.04 67.96 0.68 -30.17 16 20 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 21 C 0.04 2.57 5.50 84.86 0.47 3.04 16 22 N -0.92 -55.94 13.97 21.65 0.30 -55.64 16 23 Si 0.92 45.02 27.74 68.60 1.90 46.92 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 27 C -0.14 -2.70 5.19 29.41 0.15 -2.55 16 28 C 0.13 1.87 5.38 87.39 0.47 2.34 16 29 H 0.12 -0.97 4.58 -2.39 -0.01 -0.98 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.10 -0.57 7.57 -2.39 -0.02 -0.59 16 33 H 0.13 -1.10 4.85 -2.39 -0.01 -1.11 16 34 H 0.12 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.06 0.25 7.32 -2.39 -0.02 0.24 16 36 H 0.08 0.41 7.49 -2.39 -0.02 0.39 16 37 H 0.08 0.51 8.05 -2.39 -0.02 0.49 16 38 H 0.41 6.35 8.61 -92.71 -0.80 5.55 16 39 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 40 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 41 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.05 1.29 7.95 -2.39 -0.02 1.28 16 44 H 0.07 1.32 7.30 -2.39 -0.02 1.30 16 45 H 0.10 1.14 8.07 -2.39 -0.02 1.12 16 Total: -1.00 -92.24 377.64 3.72 -88.52 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 0.19 Total: 0.76 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.13 Total: 2.60 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -3.36 Total: -91.03 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.09 Total: -37.96 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -92.24 3.72 -88.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.677 kcal (2) G-P(sol) polarization free energy of solvation -92.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds