Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47291 * 2 1 4 4 C 1.47205 * 109.46521 * 119.99503 * 2 1 3 5 5 N 2.60806 * 109.46737 * 119.99625 * 2 1 3 6 6 C 1.50694 * 109.47568 * 239.99639 * 2 1 3 7 7 O 1.21291 * 119.99979 * 266.54257 * 6 2 1 8 8 N 1.34776 * 120.00082 * 86.53465 * 6 2 1 9 9 C 1.47600 * 118.64200 * 354.96309 * 8 6 2 10 10 C 1.53945 * 112.14031 * 222.14979 * 9 8 6 11 11 C 1.50881 * 110.09815 * 40.56373 * 10 9 8 12 12 C 1.52566 * 109.36169 * 268.11544 * 11 10 9 13 13 H 1.09003 * 108.39156 * 323.84709 * 12 11 10 14 14 N 1.46497 * 108.52007 * 206.26222 * 12 11 10 15 15 C 1.34776 * 120.00513 * 150.22859 * 14 12 11 16 16 O 1.21281 * 119.99469 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00203 * 180.02562 * 15 14 12 18 18 S 1.80994 * 109.47291 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00226 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00243 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99955 * 179.72326 * 21 19 18 23 23 Si 1.86795 * 120.00045 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47331 * 89.99703 * 23 21 19 25 25 H 1.48496 * 109.47341 * 209.99620 * 23 21 19 26 26 H 1.48505 * 109.46798 * 329.99772 * 23 21 19 27 27 C 1.47100 * 114.32598 * 85.00633 * 12 11 10 28 28 C 1.44577 * 118.64081 * 174.97785 * 8 6 2 29 29 H 1.08999 * 109.47430 * 292.66190 * 1 2 3 30 30 H 1.09002 * 109.46874 * 52.66169 * 1 2 3 31 31 H 1.09000 * 109.47052 * 172.65920 * 1 2 3 32 32 H 1.09005 * 108.94851 * 342.83111 * 9 8 6 33 33 H 1.08999 * 108.94987 * 101.55463 * 9 8 6 34 34 H 1.09001 * 109.36966 * 160.75094 * 10 9 8 35 35 H 1.09003 * 109.37041 * 280.49967 * 10 9 8 36 36 H 1.09000 * 109.49806 * 148.14831 * 11 10 9 37 37 H 1.09007 * 109.48809 * 28.07686 * 11 10 9 38 38 H 0.97008 * 119.99606 * 330.23695 * 14 12 11 39 39 H 1.09002 * 109.46835 * 59.99933 * 17 15 14 40 40 H 1.09004 * 109.47104 * 300.00793 * 17 15 14 41 41 H 0.97000 * 119.99889 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.32940 * 57.46075 * 27 12 11 43 43 H 1.09004 * 109.32634 * 176.94168 * 27 12 11 44 44 H 1.08998 * 109.45436 * 329.21446 * 28 8 6 45 45 H 1.09013 * 109.42736 * 209.27997 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0205 -0.6939 1.2020 5 7 2.3992 -1.2293 2.1296 6 6 2.0324 -0.7104 -1.2303 7 8 2.2943 -1.8938 -1.1829 8 7 2.1906 -0.0310 -2.3835 9 6 1.7572 1.3789 -2.4391 10 6 1.0274 1.7101 -3.7535 11 6 0.1120 0.5743 -4.1386 12 6 0.8604 -0.3908 -5.0531 13 1 1.5228 0.1887 -5.6962 14 7 -0.1159 -1.0837 -5.8973 15 6 0.2347 -1.5008 -7.1300 16 8 1.3588 -1.3029 -7.5401 17 6 -0.7698 -2.2131 -7.9986 18 16 -0.0024 -2.6432 -9.5803 19 6 -1.3594 -3.4407 -10.3721 20 1 -2.3052 -3.5337 -9.8590 21 6 -1.2133 -3.9484 -11.6556 22 7 -2.2255 -4.5490 -12.2450 23 14 0.4223 -3.7869 -12.5433 24 1 1.2661 -4.9721 -12.2460 25 1 0.1850 -3.7028 -14.0068 26 1 1.1160 -2.5572 -12.0828 27 6 1.6629 -1.3988 -4.3434 28 6 2.7774 -0.7133 -3.5150 29 1 -0.3634 0.3959 0.9483 30 1 -0.3633 0.6233 -0.8171 31 1 -0.3633 -1.0192 -0.1313 32 1 1.0868 1.5764 -1.6026 33 1 2.6327 2.0221 -2.3502 34 1 0.4401 2.6188 -3.6218 35 1 1.7606 1.8652 -4.5450 36 1 -0.7584 0.9700 -4.6620 37 1 -0.2116 0.0475 -3.2408 38 1 -1.0149 -1.2422 -5.5691 39 1 -1.6251 -1.5607 -8.1747 40 1 -1.1034 -3.1221 -7.4978 41 1 -2.1235 -4.9035 -13.1421 42 1 1.0171 -1.9698 -3.6763 43 1 2.1163 -2.0748 -5.0684 44 1 3.4809 -1.4663 -3.1599 45 1 3.3031 0.0081 -4.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -44.053824 kcal Electronic energy + Delta-G solvation = -26944.969656 eV Core-core repulsion = 23088.902424 eV Total energy + Delta-G solvation = -3856.067232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27194 -39.70453 -37.94885 -36.95218 -35.37968 -33.98643 -33.12241 -32.45076 -31.89658 -29.21492 -27.20136 -26.04559 -25.63804 -25.11973 -22.78333 -21.05961 -20.54997 -19.97848 -18.20097 -17.94967 -17.85041 -16.66455 -16.37033 -16.29668 -15.89931 -15.28231 -15.02649 -14.97280 -14.81794 -14.32195 -14.27933 -13.88260 -13.75719 -13.57202 -13.42675 -13.14798 -13.09303 -12.81282 -12.80109 -12.58259 -12.40316 -12.22150 -12.11121 -11.87563 -11.81122 -11.46658 -11.27426 -11.19892 -11.02033 -10.95416 -10.59681 -10.24292 -9.86929 -9.56065 -9.26167 -9.01995 -8.94284 -8.51790 -6.93118 -6.30059 -4.01862 1.90014 2.02043 2.31976 2.64374 2.74414 2.94806 3.27557 3.30221 3.33018 3.49015 3.62401 3.78621 4.06461 4.20290 4.28962 4.31890 4.35080 4.50561 4.55460 4.70886 4.76405 4.86298 4.91293 4.98028 5.05935 5.09023 5.12427 5.17055 5.32390 5.33768 5.38627 5.41242 5.48784 5.71025 5.72617 5.76196 5.84039 5.99565 6.10302 6.17655 6.54504 6.71255 7.07180 7.56747 7.58533 7.92982 8.40463 8.46542 9.16087 10.79162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.002096 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.653226 B =13354.702566 C =13486.842110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.014 4.014 3 H 0.135 0.865 4 C 0.218 3.782 5 N -0.410 5.410 6 C 0.518 3.482 7 O -0.519 6.519 8 N -0.599 5.599 9 C 0.097 3.903 10 C -0.131 4.131 11 C -0.126 4.126 12 C 0.148 3.852 13 H 0.084 0.916 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.125 4.125 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.146 4.146 28 C 0.121 3.879 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 17.984 24.180 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.153 0.847 4 C -0.101 4.101 5 N -0.085 5.085 6 C 0.303 3.697 7 O -0.394 6.394 8 N -0.332 5.332 9 C -0.025 4.025 10 C -0.169 4.169 11 C -0.164 4.164 12 C 0.044 3.956 13 H 0.102 0.898 14 N -0.391 5.391 15 C 0.318 3.682 16 O -0.394 6.394 17 C -0.276 4.276 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.185 4.185 28 C -0.002 4.002 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.754 16.780 24.717 30.629 hybrid contribution -1.442 -0.212 -0.417 1.516 sum 5.312 16.568 24.301 29.887 Atomic orbital electron populations 1.21842 0.89170 1.04821 1.04494 1.18922 0.99204 0.99851 0.85848 0.84716 1.28118 0.94014 0.93931 0.94042 1.81226 1.07711 1.07663 1.11892 1.20061 0.78400 0.87200 0.84072 1.90813 1.49128 1.14881 1.84577 1.47716 1.61522 1.12481 1.11483 1.22237 0.99710 0.80988 0.99584 1.21708 0.99241 0.98846 0.97108 1.21402 0.98851 0.96206 0.99911 1.19924 0.90855 0.93070 0.91778 0.89775 1.46235 1.15653 1.61185 1.16015 1.20282 0.88795 0.78049 0.81113 1.90690 1.21255 1.54893 1.72609 1.23288 1.01049 1.02896 1.00331 1.84772 1.21237 1.75796 1.09739 1.22315 0.98336 1.42525 1.03738 0.89408 1.24722 0.97047 0.93379 0.96220 1.69940 1.30786 1.36314 1.14623 0.86726 0.84058 0.81344 0.79670 1.19209 1.19954 1.15938 1.21599 0.98197 0.98955 0.99756 1.21438 0.95267 0.97078 0.86445 0.90062 0.89630 0.90579 0.89462 0.90808 0.89595 0.90574 0.90458 0.91091 0.76805 0.88539 0.88572 0.91940 0.91166 0.89705 0.89334 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.34 8.94 37.16 0.33 -0.01 16 2 C -0.01 -0.06 2.23 -94.56 -0.21 -0.27 16 3 H 0.14 0.07 6.75 -51.93 -0.35 -0.28 16 4 C 0.22 1.87 14.03 -20.76 -0.29 1.58 16 5 N -0.41 -4.84 18.54 42.15 0.78 -4.06 16 6 C 0.52 3.90 6.67 -10.99 -0.07 3.82 16 7 O -0.52 -6.51 15.77 5.55 0.09 -6.42 16 8 N -0.60 -3.37 2.24 -172.54 -0.39 -3.76 16 9 C 0.10 0.20 5.63 -2.95 -0.02 0.18 16 10 C -0.13 -0.39 5.71 -27.30 -0.16 -0.55 16 11 C -0.13 -0.65 5.00 -28.02 -0.14 -0.79 16 12 C 0.15 1.34 1.96 -70.99 -0.14 1.20 16 13 H 0.08 0.91 6.65 -51.93 -0.35 0.57 16 14 N -0.74 -8.28 4.88 -56.81 -0.28 -8.56 16 15 C 0.53 8.79 7.69 -10.99 -0.08 8.71 16 16 O -0.52 -10.48 15.36 5.56 0.09 -10.39 16 17 C -0.13 -2.33 6.16 36.00 0.22 -2.11 16 18 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 19 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 21 C 0.09 2.76 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 23 Si 0.86 21.64 27.74 -169.99 -4.72 16.92 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 27 C -0.15 -1.42 5.19 -28.58 -0.15 -1.57 16 28 C 0.12 0.94 5.34 -4.09 -0.02 0.92 16 29 H 0.08 0.10 8.12 -51.93 -0.42 -0.32 16 30 H 0.08 0.02 6.79 -51.93 -0.35 -0.33 16 31 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 32 H 0.09 -0.03 4.46 -51.93 -0.23 -0.26 16 33 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.08 0.31 7.30 -51.93 -0.38 -0.07 16 36 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 37 H 0.07 0.33 7.48 -51.93 -0.39 -0.06 16 38 H 0.40 3.46 8.61 -40.82 -0.35 3.11 16 39 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 44 H 0.09 0.83 7.38 -51.93 -0.38 0.45 16 45 H 0.08 0.55 8.06 -51.92 -0.42 0.13 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -38.53 380.87 -6.98 -45.51 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.57 Total: -3.04 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.51 Total: -0.78 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.89 Total: -42.01 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.17 Total: -16.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.53 -6.98 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.460 kcal (2) G-P(sol) polarization free energy of solvation -38.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds