Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47291 * 2 1 4 4 C 1.47205 * 109.46521 * 119.99503 * 2 1 3 5 5 N 2.60806 * 109.46737 * 119.99625 * 2 1 3 6 6 C 1.50694 * 109.47568 * 239.99639 * 2 1 3 7 7 O 1.21291 * 119.99979 * 266.54257 * 6 2 1 8 8 N 1.34776 * 120.00082 * 86.53465 * 6 2 1 9 9 C 1.47600 * 118.64200 * 354.96309 * 8 6 2 10 10 C 1.53945 * 112.14031 * 222.14979 * 9 8 6 11 11 C 1.50881 * 110.09815 * 40.56373 * 10 9 8 12 12 C 1.52566 * 109.36169 * 268.11544 * 11 10 9 13 13 H 1.09003 * 108.39156 * 323.84709 * 12 11 10 14 14 N 1.46497 * 108.52007 * 206.26222 * 12 11 10 15 15 C 1.34776 * 120.00513 * 150.22859 * 14 12 11 16 16 O 1.21281 * 119.99469 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00203 * 180.02562 * 15 14 12 18 18 S 1.80994 * 109.47291 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00226 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00243 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99955 * 179.72326 * 21 19 18 23 23 Si 1.86795 * 120.00045 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47331 * 89.99703 * 23 21 19 25 25 H 1.48496 * 109.47341 * 209.99620 * 23 21 19 26 26 H 1.48505 * 109.46798 * 329.99772 * 23 21 19 27 27 C 1.47100 * 114.32598 * 85.00633 * 12 11 10 28 28 C 1.44577 * 118.64081 * 174.97785 * 8 6 2 29 29 H 1.08999 * 109.47430 * 292.66190 * 1 2 3 30 30 H 1.09002 * 109.46874 * 52.66169 * 1 2 3 31 31 H 1.09000 * 109.47052 * 172.65920 * 1 2 3 32 32 H 1.09005 * 108.94851 * 342.83111 * 9 8 6 33 33 H 1.08999 * 108.94987 * 101.55463 * 9 8 6 34 34 H 1.09001 * 109.36966 * 160.75094 * 10 9 8 35 35 H 1.09003 * 109.37041 * 280.49967 * 10 9 8 36 36 H 1.09000 * 109.49806 * 148.14831 * 11 10 9 37 37 H 1.09007 * 109.48809 * 28.07686 * 11 10 9 38 38 H 0.97008 * 119.99606 * 330.23695 * 14 12 11 39 39 H 1.09002 * 109.46835 * 59.99933 * 17 15 14 40 40 H 1.09004 * 109.47104 * 300.00793 * 17 15 14 41 41 H 0.97000 * 119.99889 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.32940 * 57.46075 * 27 12 11 43 43 H 1.09004 * 109.32634 * 176.94168 * 27 12 11 44 44 H 1.08998 * 109.45436 * 329.21446 * 28 8 6 45 45 H 1.09013 * 109.42736 * 209.27997 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0205 -0.6939 1.2020 5 7 2.3992 -1.2293 2.1296 6 6 2.0324 -0.7104 -1.2303 7 8 2.2943 -1.8938 -1.1829 8 7 2.1906 -0.0310 -2.3835 9 6 1.7572 1.3789 -2.4391 10 6 1.0274 1.7101 -3.7535 11 6 0.1120 0.5743 -4.1386 12 6 0.8604 -0.3908 -5.0531 13 1 1.5228 0.1887 -5.6962 14 7 -0.1159 -1.0837 -5.8973 15 6 0.2347 -1.5008 -7.1300 16 8 1.3588 -1.3029 -7.5401 17 6 -0.7698 -2.2131 -7.9986 18 16 -0.0024 -2.6432 -9.5803 19 6 -1.3594 -3.4407 -10.3721 20 1 -2.3052 -3.5337 -9.8590 21 6 -1.2133 -3.9484 -11.6556 22 7 -2.2255 -4.5490 -12.2450 23 14 0.4223 -3.7869 -12.5433 24 1 1.2661 -4.9721 -12.2460 25 1 0.1850 -3.7028 -14.0068 26 1 1.1160 -2.5572 -12.0828 27 6 1.6629 -1.3988 -4.3434 28 6 2.7774 -0.7133 -3.5150 29 1 -0.3634 0.3959 0.9483 30 1 -0.3633 0.6233 -0.8171 31 1 -0.3633 -1.0192 -0.1313 32 1 1.0868 1.5764 -1.6026 33 1 2.6327 2.0221 -2.3502 34 1 0.4401 2.6188 -3.6218 35 1 1.7606 1.8652 -4.5450 36 1 -0.7584 0.9700 -4.6620 37 1 -0.2116 0.0475 -3.2408 38 1 -1.0149 -1.2422 -5.5691 39 1 -1.6251 -1.5607 -8.1747 40 1 -1.1034 -3.1221 -7.4978 41 1 -2.1235 -4.9035 -13.1421 42 1 1.0171 -1.9698 -3.6763 43 1 2.1163 -2.0748 -5.0684 44 1 3.4809 -1.4663 -3.1599 45 1 3.3031 0.0081 -4.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065876680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -72.305641 kcal Electronic energy + Delta-G solvation = -26946.194747 eV Core-core repulsion = 23088.902424 eV Total energy + Delta-G solvation = -3857.292322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86829 -40.78055 -38.74640 -37.65951 -36.19890 -34.67607 -34.52333 -33.67298 -32.77680 -30.50523 -27.91764 -27.66216 -26.44520 -25.65777 -23.38965 -21.73847 -21.65466 -20.56278 -19.85624 -18.65933 -18.47204 -17.85642 -17.37596 -17.06474 -16.97525 -16.59603 -16.27079 -15.86818 -15.56838 -15.32281 -15.07743 -14.94640 -14.82380 -14.49530 -14.39262 -14.12788 -13.83977 -13.62456 -13.61000 -13.34629 -13.30634 -13.09563 -13.02154 -12.79991 -12.74406 -12.53643 -12.32289 -12.27887 -11.93092 -11.86332 -11.73035 -11.54481 -11.17461 -10.92095 -10.82290 -10.53546 -10.16169 -9.64865 -8.99212 -8.51810 -6.22320 0.99786 1.31420 1.32611 1.46308 1.47605 1.56732 1.60622 1.69720 2.13575 2.23579 2.28761 2.72279 2.81884 2.86421 3.37943 3.62765 3.84004 3.94652 4.00265 4.05881 4.07545 4.15518 4.24229 4.26808 4.37459 4.43736 4.47989 4.62893 4.74137 4.78153 4.82846 4.87674 5.01462 5.05907 5.14080 5.22742 5.28934 5.34421 5.44818 5.55744 5.64735 5.70414 6.11102 6.23984 6.47817 6.51653 6.93386 7.04362 7.24206 8.60555 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.002096 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.653226 B =13354.702566 C =13486.842110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 H 0.188 0.812 4 C 0.240 3.760 5 N -0.478 5.478 6 C 0.515 3.485 7 O -0.581 6.581 8 N -0.590 5.590 9 C 0.088 3.912 10 C -0.128 4.128 11 C -0.119 4.119 12 C 0.148 3.852 13 H 0.069 0.931 14 N -0.714 5.714 15 C 0.535 3.465 16 O -0.561 6.561 17 C -0.113 4.113 18 S -0.175 6.175 19 C -0.529 4.529 20 H 0.062 0.938 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.265 1.265 25 H -0.259 1.259 26 H -0.235 1.235 27 C -0.138 4.138 28 C 0.128 3.872 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.277 0.723 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 21.559 25.617 33.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 H 0.204 0.796 4 C -0.078 4.078 5 N -0.154 5.154 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.321 5.321 9 C -0.032 4.032 10 C -0.166 4.166 11 C -0.157 4.157 12 C 0.045 3.955 13 H 0.087 0.913 14 N -0.367 5.367 15 C 0.321 3.679 16 O -0.439 6.439 17 C -0.264 4.264 18 S 0.051 5.949 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.189 1.189 25 H -0.183 1.183 26 H -0.159 1.159 27 C -0.177 4.177 28 C 0.003 3.997 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.251 0.749 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.323 20.411 26.189 33.800 hybrid contribution -1.398 -1.291 -0.769 2.052 sum 4.925 19.120 25.420 32.187 Atomic orbital electron populations 1.21944 0.87117 1.04322 1.06824 1.19295 1.00544 1.01111 0.82033 0.79558 1.28969 0.92283 0.92544 0.94038 1.81237 1.10023 1.09768 1.14407 1.20630 0.77410 0.86567 0.85246 1.90801 1.51916 1.17754 1.85579 1.47782 1.60407 1.13812 1.10081 1.22651 1.01500 0.78525 1.00528 1.21735 0.98883 0.98925 0.97073 1.21410 0.99079 0.95920 0.99310 1.20189 0.90585 0.93030 0.91729 0.91292 1.46098 1.16896 1.59467 1.14233 1.19909 0.87577 0.78046 0.82412 1.90679 1.22574 1.56837 1.73834 1.23294 1.01728 1.04163 0.97214 1.84681 1.20932 1.75550 1.13723 1.22469 0.98511 1.42624 1.04060 0.92026 1.25585 1.00296 0.93148 0.97106 1.70019 1.32705 1.37383 1.15372 0.85854 0.79976 0.81248 0.79212 1.18943 1.18278 1.15901 1.21466 0.98620 0.98709 0.98936 1.21207 0.94273 0.97099 0.87106 0.88377 0.86290 0.92918 0.85879 0.88502 0.86478 0.91741 0.89589 0.89869 0.74929 0.86742 0.87459 0.91386 0.92066 0.93465 0.91646 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 8.94 71.98 0.64 0.57 16 2 C -0.01 -0.03 2.23 -13.35 -0.03 -0.06 16 3 H 0.19 -0.98 6.75 -2.39 -0.02 -0.99 16 4 C 0.24 3.80 14.03 89.44 1.25 5.05 16 5 N -0.48 -11.39 18.54 20.01 0.37 -11.01 16 6 C 0.51 6.74 6.67 87.66 0.58 7.32 16 7 O -0.58 -14.83 15.77 -3.06 -0.05 -14.88 16 8 N -0.59 -4.97 2.24 -818.17 -1.83 -6.80 16 9 C 0.09 -0.12 5.63 86.49 0.49 0.37 16 10 C -0.13 -0.12 5.71 30.22 0.17 0.05 16 11 C -0.12 -0.75 5.00 29.76 0.15 -0.60 16 12 C 0.15 2.44 1.96 43.01 0.08 2.52 16 13 H 0.07 1.42 6.65 -2.39 -0.02 1.40 16 14 N -0.71 -14.92 4.88 -452.05 -2.21 -17.13 16 15 C 0.54 17.38 7.69 87.66 0.67 18.05 16 16 O -0.56 -22.77 15.36 -3.03 -0.05 -22.81 16 17 C -0.11 -4.15 6.16 71.23 0.44 -3.71 16 18 S -0.18 -8.78 18.55 -56.49 -1.05 -9.83 16 19 C -0.53 -30.72 10.04 67.95 0.68 -30.04 16 20 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 21 C 0.04 2.58 5.50 84.86 0.47 3.05 16 22 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 23 Si 0.92 44.96 27.74 68.60 1.90 46.86 16 24 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 27 C -0.14 -2.68 5.19 29.40 0.15 -2.53 16 28 C 0.13 1.91 5.34 87.37 0.47 2.37 16 29 H 0.10 -0.20 8.12 -2.39 -0.02 -0.22 16 30 H 0.12 -0.71 6.79 -2.39 -0.02 -0.73 16 31 H 0.05 0.32 8.13 -2.39 -0.02 0.30 16 32 H 0.12 -1.00 4.46 -2.38 -0.01 -1.01 16 33 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.06 0.28 7.30 -2.39 -0.02 0.26 16 36 H 0.09 0.47 8.05 -2.39 -0.02 0.45 16 37 H 0.08 0.37 7.48 -2.38 -0.02 0.35 16 38 H 0.41 6.15 8.61 -92.70 -0.80 5.35 16 39 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 41 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.27 7.95 -2.38 -0.02 1.25 16 44 H 0.07 1.30 7.38 -2.39 -0.02 1.29 16 45 H 0.10 1.18 8.06 -2.38 -0.02 1.16 16 Total: -1.00 -91.29 380.87 3.81 -87.48 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 0.19 Total: 1.18 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.23 Total: 2.44 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -3.37 Total: -90.44 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.09 Total: -37.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -91.29 3.81 -87.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.173 kcal (2) G-P(sol) polarization free energy of solvation -91.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds