Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 C 1.47196 * 109.47135 * 240.00277 * 2 1 3 5 5 N 2.60805 * 109.47021 * 240.00399 * 2 1 3 6 6 C 1.50694 * 109.47041 * 120.00342 * 2 1 3 7 7 O 1.21287 * 120.00220 * 120.00006 * 6 2 1 8 8 N 1.34783 * 120.00028 * 300.00003 * 6 2 1 9 9 C 1.46498 * 120.00129 * 180.02562 * 8 6 2 10 10 H 1.09005 * 109.50782 * 324.94531 * 9 8 6 11 11 C 1.52426 * 109.29984 * 204.86202 * 9 8 6 12 12 C 1.47088 * 114.22165 * 154.95249 * 11 9 8 13 13 C 1.54864 * 110.32880 * 62.78368 * 12 11 9 14 14 N 1.44574 * 109.60364 * 288.73919 * 13 12 11 15 15 C 1.34780 * 118.64220 * 270.74583 * 14 13 12 16 16 O 1.21281 * 120.00071 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99856 * 359.97418 * 15 14 13 18 18 S 1.81002 * 109.46752 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99589 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00265 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99491 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99560 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00276 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47232 * 89.99950 * 23 21 19 25 25 H 1.48503 * 109.46849 * 209.99856 * 23 21 19 26 26 H 1.48492 * 109.47094 * 329.99831 * 23 21 19 27 27 C 1.47609 * 122.71338 * 90.72001 * 14 13 12 28 28 C 1.50883 * 109.49058 * 84.99733 * 9 8 6 29 29 H 1.09007 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47194 * 299.99825 * 1 2 3 31 31 H 1.09003 * 109.47178 * 59.99743 * 1 2 3 32 32 H 0.96996 * 119.99959 * 359.97438 * 8 6 2 33 33 H 1.08995 * 108.57721 * 33.71196 * 11 9 8 34 34 H 1.09000 * 108.55526 * 276.16282 * 11 9 8 35 35 H 1.09002 * 109.32857 * 302.52242 * 12 11 9 36 36 H 1.09002 * 109.19041 * 182.96188 * 12 11 9 37 37 H 1.08990 * 109.45139 * 168.69004 * 13 12 11 38 38 H 1.09003 * 109.44538 * 48.77633 * 13 12 11 39 39 H 1.08993 * 109.47571 * 300.00456 * 17 15 14 40 40 H 1.09005 * 109.46665 * 60.00849 * 17 15 14 41 41 H 0.97000 * 120.00033 * 179.97438 * 22 21 19 42 42 H 1.09006 * 108.94483 * 197.18539 * 27 14 13 43 43 H 1.08998 * 108.87258 * 78.50797 * 27 14 13 44 44 H 1.09002 * 109.36568 * 91.66265 * 28 9 8 45 45 H 1.09001 * 109.36469 * 331.92225 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1296 6 6 2.0324 -0.7105 1.2304 7 8 2.7297 -1.6966 1.1191 8 7 1.7067 -0.2500 2.4546 9 6 2.1955 -0.9404 3.6507 10 1 2.2319 -2.0134 3.4624 11 6 1.2543 -0.6572 4.8157 12 6 1.2661 -1.6877 5.8652 13 6 2.6684 -1.7767 6.5161 14 7 3.5994 -2.3711 5.5832 15 6 3.7405 -3.7115 5.5769 16 8 4.5142 -4.2361 4.8042 17 6 2.9370 -4.5583 6.5300 18 16 3.3465 -6.3033 6.2786 19 6 2.2950 -7.0411 7.4849 20 1 1.6593 -6.4206 8.0990 21 6 2.2840 -8.4197 7.6457 22 7 1.4981 -8.9709 8.5464 23 14 3.3842 -9.4928 6.5840 24 1 4.6961 -9.6742 7.2558 25 1 2.7420 -10.8171 6.3862 26 1 3.5891 -8.8403 5.2659 27 6 4.4011 -1.5707 4.6371 28 6 3.5786 -0.4417 3.9899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.1494 0.5388 2.5436 33 1 0.2393 -0.5689 4.4286 34 1 1.5341 0.2962 5.2638 35 1 1.0100 -2.6522 5.4267 36 1 0.5302 -1.4313 6.6274 37 1 2.6131 -2.3909 7.4148 38 1 3.0096 -0.7760 6.7814 39 1 3.1719 -4.2736 7.5555 40 1 1.8739 -4.4046 6.3446 41 1 1.4900 -9.9343 8.6586 42 1 4.7814 -2.2257 3.8531 43 1 5.2440 -1.1327 5.1717 44 1 3.5010 0.3936 4.6859 45 1 4.0760 -0.1084 3.0791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001066476410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -45.766115 kcal Electronic energy + Delta-G solvation = -27282.200731 eV Core-core repulsion = 23426.059249 eV Total energy + Delta-G solvation = -3856.141482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90261 -39.88207 -37.79289 -36.79163 -35.21511 -33.97618 -33.14899 -32.42254 -31.90902 -29.13495 -26.84046 -25.91857 -25.61013 -25.05919 -22.25151 -21.46962 -20.98893 -18.96414 -18.41906 -17.70234 -17.59883 -16.98999 -16.55426 -16.12608 -15.73630 -15.17749 -14.96191 -14.85091 -14.44877 -14.33669 -14.08963 -13.95166 -13.61933 -13.46955 -13.31668 -13.12573 -12.83442 -12.77726 -12.75489 -12.61753 -12.32638 -12.08215 -11.93784 -11.92566 -11.54500 -11.23668 -11.22711 -11.01913 -10.97133 -10.93498 -10.56122 -10.20882 -9.83218 -9.55947 -9.40423 -8.98380 -8.56605 -8.45090 -6.89483 -6.27642 -3.98814 2.09398 2.11413 2.46142 2.73616 2.90832 2.96767 3.21964 3.35437 3.36407 3.54085 3.61593 4.15145 4.24688 4.27491 4.35418 4.41195 4.46901 4.63749 4.75386 4.79974 4.87599 4.92431 5.05334 5.06885 5.11699 5.14872 5.22235 5.31840 5.42432 5.43769 5.48922 5.64582 5.70014 5.76075 5.80382 5.84830 5.93832 5.99059 6.07969 6.13017 6.65282 6.96644 7.22175 7.46738 7.75479 7.95518 8.42278 8.48067 9.19111 10.81527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002795 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.941864 B =10014.309267 C =10887.915091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 H 0.140 0.860 4 C 0.217 3.783 5 N -0.408 5.408 6 C 0.518 3.482 7 O -0.513 6.513 8 N -0.721 5.721 9 C 0.146 3.854 10 H 0.097 0.903 11 C -0.120 4.120 12 C -0.142 4.142 13 C 0.109 3.891 14 N -0.615 5.615 15 C 0.526 3.474 16 O -0.514 6.514 17 C -0.120 4.120 18 S -0.145 6.145 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.855 3.145 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.116 3.884 28 C -0.137 4.137 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.270 0.730 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 28.865 -8.685 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.158 0.842 4 C -0.102 4.102 5 N -0.082 5.082 6 C 0.301 3.699 7 O -0.387 6.387 8 N -0.373 5.373 9 C 0.042 3.958 10 H 0.115 0.885 11 C -0.158 4.158 12 C -0.181 4.181 13 C -0.015 4.015 14 N -0.350 5.350 15 C 0.314 3.686 16 O -0.388 6.388 17 C -0.271 4.271 18 S 0.082 5.918 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.680 3.320 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.006 4.006 28 C -0.177 4.177 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.378 26.397 -11.230 28.785 hybrid contribution -1.041 0.665 1.155 1.691 sum -3.419 27.062 -10.075 29.079 Atomic orbital electron populations 1.21814 0.89545 1.04574 1.04346 1.18837 0.98811 1.00081 0.85720 0.84248 1.28062 0.94017 0.94118 0.94046 1.81225 1.07418 1.07417 1.12170 1.20028 0.80875 0.84833 0.84212 1.90885 1.36378 1.25161 1.86286 1.46040 1.53987 1.32144 1.05150 1.20533 0.92885 0.98938 0.83456 0.88450 1.20666 0.99597 1.00122 0.95448 1.21280 0.98006 1.00253 0.98534 1.21608 0.88183 0.99559 0.92195 1.47700 1.43151 1.06169 1.38020 1.20407 0.82526 0.81810 0.83868 1.90706 1.36703 1.71845 1.39517 1.23351 1.02581 1.00071 1.01084 1.84877 1.58557 0.96119 1.52273 1.22302 1.27293 0.95353 1.21734 0.89404 1.24702 0.94841 0.97070 0.94653 1.69937 1.37341 1.11781 1.32736 0.86750 0.81141 0.80821 0.83266 1.19212 1.19964 1.15882 1.21683 0.92566 0.93193 0.93202 1.22170 0.95888 0.98305 1.01301 0.90823 0.89890 0.90203 0.76468 0.91302 0.91420 0.90836 0.89868 0.89576 0.90420 0.88578 0.88520 0.91969 0.88809 0.91906 0.91196 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.35 9.04 37.16 0.34 -0.02 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.12 8.14 -51.93 -0.42 -0.31 16 4 C 0.22 2.16 13.88 -20.76 -0.29 1.87 16 5 N -0.41 -5.50 18.54 42.16 0.78 -4.72 16 6 C 0.52 4.36 6.95 -10.99 -0.08 4.29 16 7 O -0.51 -7.56 15.69 5.55 0.09 -7.47 16 8 N -0.72 -3.99 4.82 -55.13 -0.27 -4.26 16 9 C 0.15 1.19 2.06 -69.29 -0.14 1.04 16 10 H 0.10 1.26 6.91 -51.93 -0.36 0.90 16 11 C -0.12 -0.70 4.68 -29.86 -0.14 -0.84 16 12 C -0.14 -1.11 5.61 -28.59 -0.16 -1.27 16 13 C 0.11 0.99 5.17 -4.09 -0.02 0.97 16 14 N -0.61 -7.86 2.23 -172.54 -0.39 -8.25 16 15 C 0.53 9.53 7.64 -10.98 -0.08 9.45 16 16 O -0.51 -11.52 15.14 5.56 0.08 -11.44 16 17 C -0.12 -2.32 4.65 36.01 0.17 -2.16 16 18 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 19 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 23 Si 0.86 22.12 27.74 -169.99 -4.72 17.40 16 24 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 27 C 0.12 1.33 6.10 -2.94 -0.02 1.31 16 28 C -0.14 -1.09 5.39 -27.30 -0.15 -1.24 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 -0.01 7.56 -51.93 -0.39 -0.41 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.40 0.60 8.01 -40.82 -0.33 0.27 16 33 H 0.07 0.32 8.03 -51.93 -0.42 -0.09 16 34 H 0.07 0.27 7.36 -51.93 -0.38 -0.11 16 35 H 0.07 0.77 7.28 -51.93 -0.38 0.40 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.83 6.26 -51.93 -0.32 0.50 16 38 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 39 H 0.10 1.71 7.30 -51.92 -0.38 1.33 16 40 H 0.10 1.73 7.08 -51.91 -0.37 1.36 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.09 1.40 6.95 -51.93 -0.36 1.04 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.39 7.32 -51.93 -0.38 0.01 16 45 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -40.26 380.49 -7.14 -47.40 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.59 Total: -3.99 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.65 Total: 1.16 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.91 Total: -43.08 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.72 Total: 17.40 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.26 -7.14 -47.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066476410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.632 kcal (2) G-P(sol) polarization free energy of solvation -40.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds