Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.47203 * 109.46868 * 239.99849 * 2 1 3 5 5 N 2.60798 * 109.46923 * 240.00088 * 2 1 3 6 6 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 7 7 O 1.21277 * 120.00304 * 120.00026 * 6 2 1 8 8 N 1.34778 * 119.99637 * 299.99654 * 6 2 1 9 9 C 1.46505 * 119.99943 * 180.02562 * 8 6 2 10 10 C 1.52997 * 109.46014 * 60.02749 * 9 8 6 11 11 C 1.53044 * 109.45997 * 300.06811 * 9 8 6 12 12 C 1.53185 * 109.31249 * 301.34650 * 11 9 8 13 13 N 1.46932 * 108.77611 * 305.36101 * 12 11 9 14 14 C 1.34771 * 120.63308 * 233.63338 * 13 12 11 15 15 O 1.21279 * 120.00161 * 179.97438 * 14 13 12 16 16 C 1.50702 * 120.00144 * 359.97438 * 14 13 12 17 17 S 1.80994 * 109.47298 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00101 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99927 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00166 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47363 * 60.00316 * 22 20 18 24 24 H 1.48506 * 109.46821 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47092 * 299.99734 * 22 20 18 26 26 C 1.46927 * 118.73428 * 53.61365 * 13 12 11 27 27 C 1.53041 * 109.46115 * 180.02562 * 9 8 6 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00473 * 0.02562 * 8 6 2 32 32 H 1.09005 * 109.47448 * 59.99790 * 10 9 8 33 33 H 1.08998 * 109.47352 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00279 * 10 9 8 35 35 H 1.09000 * 109.49312 * 61.29594 * 11 9 8 36 36 H 1.08998 * 109.49891 * 181.39147 * 11 9 8 37 37 H 1.09008 * 109.58562 * 185.57759 * 12 11 9 38 38 H 1.08990 * 109.59043 * 65.15046 * 12 11 9 39 39 H 1.09001 * 109.47149 * 300.00296 * 16 14 13 40 40 H 1.09004 * 109.47078 * 59.99945 * 16 14 13 41 41 H 0.96996 * 119.99706 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.58264 * 186.61043 * 26 13 12 43 43 H 1.08997 * 109.70984 * 66.24905 * 26 13 12 44 44 H 1.09002 * 109.49379 * 178.60704 * 27 9 8 45 45 H 1.08998 * 109.49541 * 298.66876 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7105 1.2304 7 8 2.7297 -1.6965 1.1191 8 7 1.7068 -0.2500 2.4545 9 6 2.1956 -0.9403 3.6507 10 6 3.7256 -0.9390 3.6505 11 6 1.6873 -2.3838 3.6498 12 6 0.1558 -2.3816 3.6152 13 7 -0.3413 -1.5675 4.7328 14 6 -1.2341 -2.0730 5.6067 15 8 -1.6365 -1.3910 6.5253 16 6 -1.7325 -3.4857 5.4425 17 16 -2.9109 -3.8670 6.7622 18 6 -3.3199 -5.5273 6.3370 19 1 -2.8649 -5.9916 5.4746 20 6 -4.2261 -6.2389 7.1109 21 7 -4.7796 -5.6735 8.1630 22 14 -4.6591 -7.9993 6.6605 23 1 -3.4310 -8.8337 6.6880 24 1 -5.6425 -8.5325 7.6372 25 1 -5.2487 -8.0308 5.2979 26 6 0.1537 -0.1920 4.8796 27 6 1.6848 -0.2191 4.9001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1489 0.5384 2.5436 32 1 4.0882 0.0890 3.6505 33 1 4.0895 -1.4529 4.5402 34 1 4.0893 -1.4524 2.7605 35 1 2.0703 -2.9038 2.7718 36 1 2.0301 -2.8908 4.5518 37 1 -0.2134 -3.4024 3.7142 38 1 -0.1877 -1.9564 2.6723 39 1 -2.2244 -3.5873 4.4751 40 1 -0.8910 -4.1765 5.4965 41 1 -5.4126 -6.1709 8.7041 42 1 -0.2167 0.2319 5.8130 43 1 -0.1900 0.4139 4.0413 44 1 2.0277 -0.7465 5.7903 45 1 2.0665 0.8018 4.9125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072886991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -45.014718 kcal Electronic energy + Delta-G solvation = -27529.187059 eV Core-core repulsion = 23673.078160 eV Total energy + Delta-G solvation = -3856.108899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29983 -39.63405 -37.88431 -36.76120 -34.81943 -34.09237 -32.44183 -31.90278 -31.48310 -29.46933 -27.97334 -25.86563 -25.50560 -23.61999 -23.57659 -22.21024 -20.24407 -19.17427 -18.44176 -17.70500 -17.64032 -16.74699 -16.09454 -15.72979 -15.61375 -15.21484 -14.83169 -14.80958 -14.64024 -14.16328 -13.99933 -13.84558 -13.68339 -13.53002 -13.23521 -13.14243 -12.89234 -12.75069 -12.55319 -12.48953 -12.33174 -12.23392 -12.08125 -11.91717 -11.73292 -11.48560 -11.14013 -11.05292 -11.04658 -10.94855 -10.76958 -9.99047 -9.82765 -9.54204 -9.40254 -9.07158 -8.57996 -8.25459 -6.52219 -6.23001 -3.93879 2.03368 2.07368 2.41215 2.83570 2.90299 2.99897 3.22966 3.24995 3.28391 3.33987 3.56359 4.04941 4.19048 4.27442 4.33591 4.39686 4.45988 4.55960 4.77007 4.87970 4.96307 5.02475 5.08561 5.12150 5.14046 5.23078 5.31391 5.43056 5.48141 5.50396 5.53001 5.64549 5.68085 5.73360 5.81778 5.84882 5.94039 5.97069 6.09496 6.17545 6.57678 6.95919 7.17688 7.48544 7.58201 7.69083 8.33691 8.50467 9.22398 10.84347 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.002657 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.218985 B =10535.911992 C =11444.397277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.012 4.012 3 H 0.140 0.860 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.525 3.475 7 O -0.520 6.520 8 N -0.713 5.713 9 C 0.180 3.820 10 C -0.163 4.163 11 C -0.148 4.148 12 C 0.112 3.888 13 N -0.619 5.619 14 C 0.536 3.464 15 O -0.517 6.517 16 C -0.151 4.151 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.113 3.887 27 C -0.137 4.137 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.402 0.598 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.514 16.543 -13.281 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.037 4.037 3 H 0.157 0.843 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.309 3.691 7 O -0.395 6.395 8 N -0.366 5.366 9 C 0.095 3.905 10 C -0.221 4.221 11 C -0.187 4.187 12 C -0.011 4.011 13 N -0.356 5.356 14 C 0.325 3.675 15 O -0.391 6.391 16 C -0.302 4.302 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.010 4.010 27 C -0.175 4.175 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.238 0.762 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.860 16.002 -13.219 25.527 hybrid contribution -0.153 -1.330 -0.993 1.666 sum 14.707 14.672 -14.212 25.170 Atomic orbital electron populations 1.21835 0.89383 1.04683 1.04556 1.18871 0.98915 1.00145 0.85767 0.84291 1.28056 0.93870 0.94011 0.93997 1.81215 1.07665 1.07669 1.12001 1.19927 0.80475 0.84685 0.84043 1.90746 1.36906 1.25493 1.86369 1.46077 1.53587 1.32030 1.04943 1.20354 0.94260 0.92378 0.83531 1.22214 0.93698 1.02341 1.03870 1.22383 0.95623 0.95982 1.04665 1.21654 0.93681 0.96674 0.89088 1.48105 1.44640 1.13686 1.29128 1.20331 0.77683 0.88711 0.80822 1.90691 1.56408 1.60718 1.31278 1.23558 1.04698 0.94962 1.06957 1.85374 1.49881 1.16252 1.31899 1.22815 1.30721 0.98541 1.16305 0.91003 1.24985 0.95064 0.98969 0.94498 1.70006 1.27654 1.37289 1.15352 0.86234 0.78357 0.82607 0.78374 1.19916 1.20807 1.19924 1.21449 0.92622 0.83681 1.03293 1.22252 0.96303 1.01522 0.97467 0.89809 0.90135 0.90739 0.76202 0.92483 0.91516 0.90282 0.88527 0.90271 0.89159 0.91792 0.89330 0.89280 0.92122 0.88411 0.92147 0.89391 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 9.05 37.16 0.34 -0.05 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.07 8.14 -51.93 -0.42 -0.35 16 4 C 0.22 1.92 13.88 -20.76 -0.29 1.63 16 5 N -0.41 -4.98 18.54 42.15 0.78 -4.20 16 6 C 0.53 3.48 6.56 -10.99 -0.07 3.41 16 7 O -0.52 -5.69 12.25 5.56 0.07 -5.62 16 8 N -0.71 -3.47 3.99 -47.57 -0.19 -3.66 16 9 C 0.18 1.24 0.66 -131.77 -0.09 1.15 16 10 C -0.16 -1.17 8.40 37.16 0.31 -0.86 16 11 C -0.15 -1.35 4.67 -26.61 -0.12 -1.47 16 12 C 0.11 1.14 6.08 -3.71 -0.02 1.12 16 13 N -0.62 -7.54 2.97 -172.80 -0.51 -8.05 16 14 C 0.54 9.47 7.72 -10.99 -0.08 9.39 16 15 O -0.52 -11.06 15.27 5.56 0.08 -10.97 16 16 C -0.15 -2.97 4.50 36.01 0.16 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 22 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.11 1.01 6.16 -3.73 -0.02 0.99 16 27 C -0.14 -0.91 4.95 -26.64 -0.13 -1.04 16 28 H 0.08 0.07 7.56 -51.93 -0.39 -0.32 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.40 0.88 6.69 -40.82 -0.27 0.61 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.73 6.17 -51.93 -0.32 0.41 16 35 H 0.10 1.01 6.20 -51.93 -0.32 0.68 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.02 5.93 -51.92 -0.31 0.71 16 38 H 0.06 0.56 7.74 -51.93 -0.40 0.16 16 39 H 0.09 1.62 7.94 -51.92 -0.41 1.21 16 40 H 0.09 1.64 7.69 -51.91 -0.40 1.24 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.10 1.09 7.01 -51.93 -0.36 0.73 16 43 H 0.06 0.38 6.94 -51.93 -0.36 0.02 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -37.78 379.53 -7.15 -44.93 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.48 Total: -3.72 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.12 Total: -1.65 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.81 Total: -41.09 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.15 Total: -16.59 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.78 -7.15 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072886991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.087 kcal (2) G-P(sol) polarization free energy of solvation -37.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds