Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.47200 * 109.47331 * 120.00263 * 2 1 3 5 5 N 2.60799 * 109.47184 * 119.99997 * 2 1 3 6 6 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 7 7 O 1.21283 * 120.00262 * 240.00295 * 6 2 1 8 8 N 1.34777 * 119.99928 * 59.72201 * 6 2 1 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 2 10 10 C 1.53009 * 109.45898 * 60.00220 * 9 8 6 11 11 C 1.53039 * 109.46259 * 300.03196 * 9 8 6 12 12 C 1.53160 * 109.32676 * 301.35613 * 11 9 8 13 13 N 1.46922 * 108.76826 * 305.35531 * 12 11 9 14 14 C 1.34778 * 120.63039 * 233.63096 * 13 12 11 15 15 O 1.21281 * 120.00266 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99901 * 359.97438 * 14 13 12 17 17 S 1.81004 * 109.46831 * 180.02562 * 16 14 13 18 18 C 1.76208 * 99.99635 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99942 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99756 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99937 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99805 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46628 * 60.00217 * 22 20 18 24 24 H 1.48503 * 109.46805 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46864 * 299.99844 * 22 20 18 26 26 C 1.46921 * 118.74165 * 53.60781 * 13 12 11 27 27 C 1.53038 * 109.46419 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 29 29 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 8 6 2 32 32 H 1.08996 * 109.46586 * 60.00088 * 10 9 8 33 33 H 1.08998 * 109.46945 * 179.97438 * 10 9 8 34 34 H 1.09002 * 109.46560 * 300.00288 * 10 9 8 35 35 H 1.09005 * 109.49838 * 61.29324 * 11 9 8 36 36 H 1.08994 * 109.50162 * 181.38988 * 11 9 8 37 37 H 1.08998 * 109.59149 * 185.56724 * 12 11 9 38 38 H 1.09004 * 109.71199 * 65.20942 * 12 11 9 39 39 H 1.08997 * 109.47130 * 299.99918 * 16 14 13 40 40 H 1.08998 * 109.47290 * 60.00463 * 16 14 13 41 41 H 0.97000 * 119.99827 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.58930 * 186.60317 * 26 13 12 43 43 H 1.08999 * 109.70379 * 66.25132 * 26 13 12 44 44 H 1.08995 * 109.50218 * 178.61112 * 27 9 8 45 45 H 1.09006 * 109.49173 * 298.67244 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0324 -0.7104 -1.2305 7 8 2.7296 -1.6965 -1.1193 8 7 1.7022 -0.2532 -2.4546 9 6 2.1855 -0.9472 -3.6507 10 6 1.6748 -2.3895 -3.6446 11 6 3.7159 -0.9484 -3.6562 12 6 4.2240 0.4962 -3.6274 13 7 3.6175 1.2329 -4.7445 14 6 4.3880 1.9040 -5.6234 15 8 3.8753 2.5080 -6.5417 16 6 5.8867 1.9038 -5.4651 17 16 6.6333 2.8857 -6.7898 18 6 8.3369 2.7180 -6.3719 19 1 8.6265 2.1361 -5.5094 20 6 9.3064 3.3346 -7.1505 21 7 8.9533 4.0443 -8.2014 22 14 11.1124 3.1575 -6.7070 23 1 11.4901 1.7216 -6.7342 24 1 11.9387 3.9050 -7.6887 25 1 11.3438 3.7046 -5.3461 26 6 2.1551 1.2238 -4.8857 27 6 1.6702 -0.2292 -4.9001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.1446 0.5355 -2.5436 32 1 0.5848 -2.3888 -3.6402 33 1 2.0339 -2.9059 -4.5347 34 1 2.0414 -2.9009 -2.7545 35 1 4.0824 -1.4802 -2.7780 36 1 4.0762 -1.4429 -4.5581 37 1 5.3091 0.5041 -3.7307 38 1 3.9434 0.9659 -2.6847 39 1 6.1502 2.3365 -4.5000 40 1 6.2575 0.8802 -5.5179 41 1 9.6308 4.4755 -8.7454 42 1 1.8750 1.7118 -5.8192 43 1 1.7016 1.7521 -4.0470 44 1 2.0496 -0.7306 -5.7905 45 1 0.5803 -0.2496 -4.9078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072886992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -71.916464 kcal Electronic energy + Delta-G solvation = -27392.441647 eV Core-core repulsion = 23535.166200 eV Total energy + Delta-G solvation = -3857.275447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96929 -40.67029 -38.80056 -37.51752 -35.73697 -34.62465 -34.58207 -32.71483 -32.09818 -30.73517 -28.91379 -27.64747 -26.14967 -24.45181 -24.36414 -22.86474 -21.17309 -20.10087 -19.56958 -18.99135 -18.10854 -18.07280 -16.93097 -16.86726 -16.78551 -16.43758 -16.09395 -15.73046 -15.54068 -15.14028 -14.98457 -14.74837 -14.57233 -14.44401 -14.36694 -14.03995 -13.73458 -13.66065 -13.54743 -13.19777 -13.17117 -13.04650 -12.88237 -12.76964 -12.70168 -12.67365 -12.61038 -12.32799 -12.17506 -11.89069 -11.74011 -11.60217 -11.13380 -10.81999 -10.58158 -10.27515 -10.12453 -9.59751 -8.66323 -8.34804 -6.12499 1.26316 1.42969 1.45455 1.47500 1.55455 1.55834 1.60482 1.77726 2.12501 2.27521 2.33225 2.85729 2.99146 3.25194 3.54368 3.68446 3.75292 3.85490 3.90974 4.01102 4.08575 4.22633 4.25412 4.29938 4.41456 4.45759 4.54977 4.74566 4.79723 4.85355 4.88399 4.89225 4.92600 5.02286 5.04158 5.15330 5.19729 5.33511 5.39854 5.41233 5.59338 5.63873 6.19235 6.28453 6.46751 6.64143 7.06599 7.17994 7.25487 8.74042 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002549 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.014648 B =10982.374276 C =11905.099686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 H 0.182 0.818 4 C 0.242 3.758 5 N -0.482 5.482 6 C 0.526 3.474 7 O -0.567 6.567 8 N -0.697 5.697 9 C 0.187 3.813 10 C -0.158 4.158 11 C -0.143 4.143 12 C 0.110 3.890 13 N -0.602 5.602 14 C 0.536 3.464 15 O -0.562 6.562 16 C -0.127 4.127 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.080 0.920 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.995 3.005 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.105 3.895 27 C -0.125 4.125 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.421 0.579 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.271 0.729 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.763 -8.655 14.847 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 H 0.198 0.802 4 C -0.076 4.076 5 N -0.158 5.158 6 C 0.311 3.689 7 O -0.445 6.445 8 N -0.351 5.351 9 C 0.101 3.899 10 C -0.216 4.216 11 C -0.183 4.183 12 C -0.013 4.013 13 N -0.336 5.336 14 C 0.323 3.677 15 O -0.440 6.440 16 C -0.278 4.278 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.817 3.183 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.016 4.016 27 C -0.163 4.163 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.260 0.740 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.428 -9.167 14.823 28.404 hybrid contribution 1.771 -0.324 0.585 1.893 sum -20.658 -9.491 15.408 27.463 Atomic orbital electron populations 1.21889 0.87074 1.04231 1.06677 1.19226 1.00506 1.01132 0.82349 0.80151 1.28960 0.92077 0.92547 0.94016 1.81229 1.09940 1.10100 1.14531 1.20296 0.79625 0.84008 0.84932 1.90758 1.39025 1.27733 1.87016 1.45869 1.53199 1.32268 1.03761 1.20172 0.92465 0.92860 0.84423 1.22140 1.02006 0.94775 1.02659 1.22305 0.96251 0.96060 1.03638 1.21809 0.98612 0.91795 0.89052 1.48052 1.07414 1.50415 1.27728 1.19970 0.88204 0.78189 0.81331 1.90678 1.75069 1.44785 1.33514 1.23394 0.95268 1.04846 1.04330 1.85490 1.03810 1.66253 1.36367 1.23150 0.91727 1.38124 1.16521 0.90225 1.26083 1.04835 0.93837 0.94195 1.70166 1.36085 1.31743 1.16598 0.85051 0.75907 0.78882 0.78465 1.18858 1.20267 1.18685 1.21806 0.78149 0.97632 1.04050 1.22191 1.03389 0.94253 0.96501 0.86610 0.92255 0.89120 0.74006 0.90621 0.91792 0.92463 0.89592 0.91369 0.90427 0.89379 0.87811 0.88165 0.91956 0.90470 0.88124 0.90871 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.15 9.04 71.98 0.65 0.80 16 2 C -0.01 -0.04 3.10 -13.34 -0.04 -0.08 16 3 H 0.18 -0.53 8.14 -2.38 -0.02 -0.55 16 4 C 0.24 3.89 13.88 89.44 1.24 5.13 16 5 N -0.48 -11.73 18.54 20.01 0.37 -11.36 16 6 C 0.53 5.38 6.56 87.66 0.58 5.95 16 7 O -0.57 -11.70 12.25 -3.04 -0.04 -11.73 16 8 N -0.70 -3.83 3.99 -422.79 -1.69 -5.52 16 9 C 0.19 2.01 0.66 3.63 0.00 2.01 16 10 C -0.16 -1.89 8.40 71.99 0.60 -1.29 16 11 C -0.14 -2.40 4.66 30.66 0.14 -2.26 16 12 C 0.11 2.01 6.08 86.35 0.52 2.53 16 13 N -0.60 -13.63 2.97 -818.98 -2.43 -16.07 16 14 C 0.54 18.85 7.72 87.66 0.68 19.52 16 15 O -0.56 -24.55 15.27 -3.03 -0.05 -24.60 16 16 C -0.13 -5.02 4.50 71.24 0.32 -4.70 16 17 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 18 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 19 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 20 C 0.02 0.88 5.49 84.86 0.47 1.35 16 21 N -0.91 -55.58 13.22 21.65 0.29 -55.30 16 22 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 C 0.11 1.57 6.16 86.36 0.53 2.10 16 27 C -0.12 -1.22 4.96 30.67 0.15 -1.07 16 28 H 0.12 -0.83 7.55 -2.39 -0.02 -0.85 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.42 -0.69 6.68 -92.71 -0.62 -1.31 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.00 6.17 -2.39 -0.01 0.98 16 35 H 0.09 1.72 6.20 -2.38 -0.01 1.70 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.65 5.93 -2.39 -0.01 1.63 16 38 H 0.09 1.24 7.75 -2.38 -0.02 1.22 16 39 H 0.10 3.74 7.94 -2.40 -0.02 3.72 16 40 H 0.10 3.69 7.69 -2.40 -0.02 3.68 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.08 1.59 7.00 -2.39 -0.02 1.57 16 43 H 0.10 0.74 6.94 -2.39 -0.02 0.73 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -89.28 379.52 4.21 -85.06 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 0.40 Total: 3.67 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.49 Total: -0.58 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -3.46 Total: -88.25 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.08 Total: -36.33 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -89.28 4.21 -85.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072886992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.148 kcal (2) G-P(sol) polarization free energy of solvation -89.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds