Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.47200 * 109.47089 * 240.00398 * 2 1 3 5 5 N 2.60798 * 109.47250 * 240.00219 * 2 1 3 6 6 C 1.50697 * 109.46971 * 120.00124 * 2 1 3 7 7 O 1.21279 * 120.00487 * 22.87550 * 6 2 1 8 8 N 1.34776 * 119.99881 * 202.87164 * 6 2 1 9 9 C 1.46933 * 120.63074 * 4.78641 * 8 6 2 10 10 C 1.52757 * 109.00618 * 233.57906 * 9 8 6 11 11 C 1.53036 * 109.38752 * 305.58841 * 10 9 8 12 12 C 1.52995 * 109.46311 * 181.26285 * 11 10 9 13 13 N 1.46501 * 109.44704 * 301.22849 * 11 10 9 14 14 C 1.34777 * 119.99969 * 300.05981 * 13 11 10 15 15 O 1.21284 * 119.99925 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00319 * 180.02562 * 14 13 11 17 17 S 1.81001 * 109.47516 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00118 * 179.97438 * 17 16 14 19 19 H 1.07992 * 120.00115 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99871 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00009 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99932 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47061 * 89.99829 * 22 20 18 24 24 H 1.48506 * 109.47104 * 209.99701 * 22 20 18 25 25 H 1.48498 * 109.47305 * 329.99514 * 22 20 18 26 26 C 1.53037 * 109.53841 * 61.23885 * 11 10 9 27 27 C 1.46924 * 120.63467 * 185.06098 * 8 6 2 28 28 H 1.08994 * 109.47075 * 294.99480 * 1 2 3 29 29 H 1.09004 * 109.47027 * 174.99511 * 1 2 3 30 30 H 1.08998 * 109.47102 * 54.99335 * 1 2 3 31 31 H 1.09005 * 109.58341 * 353.41418 * 9 8 6 32 32 H 1.08995 * 109.58496 * 113.83986 * 9 8 6 33 33 H 1.09004 * 109.56287 * 185.54983 * 10 9 8 34 34 H 1.09007 * 109.38690 * 65.51761 * 10 9 8 35 35 H 1.09005 * 109.46991 * 299.93017 * 12 11 10 36 36 H 1.08998 * 109.47484 * 59.92899 * 12 11 10 37 37 H 1.08998 * 109.47230 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00617 * 120.06208 * 13 11 10 39 39 H 1.09000 * 109.47064 * 299.99726 * 16 14 13 40 40 H 1.08998 * 109.47183 * 59.99493 * 16 14 13 41 41 H 0.97000 * 120.00313 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.50238 * 178.68714 * 26 11 10 43 43 H 1.08993 * 109.52574 * 58.60526 * 26 11 10 44 44 H 1.08998 * 109.58962 * 246.16301 * 27 8 6 45 45 H 1.09003 * 109.58145 * 6.58068 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 1.3221 -1.5112 1.8008 8 7 3.2708 -0.4560 1.6970 9 6 4.1037 0.5858 1.0807 10 6 5.4522 -0.0191 0.6944 11 6 6.0813 -0.6829 1.9214 12 6 7.4462 -1.2620 1.5441 13 7 6.2501 0.3132 2.9823 14 6 7.0172 1.4008 2.7696 15 8 7.5682 1.5545 1.7001 16 6 7.1914 2.4253 3.8609 17 16 8.2695 3.7553 3.2737 18 6 8.2983 4.7808 4.7061 19 1 7.7445 4.4931 5.5874 20 6 9.0337 5.9580 4.7021 21 7 9.0556 6.7240 5.7723 22 14 9.9921 6.4554 3.1778 23 1 9.1285 7.2836 2.2984 24 1 11.1875 7.2400 3.5788 25 1 10.4224 5.2379 2.4445 26 6 5.1701 -1.8076 2.4185 27 6 3.8163 -1.2191 2.8279 28 1 -0.3633 0.4342 0.9314 29 1 -0.3633 -1.0238 -0.0897 30 1 -0.3633 0.5895 -0.8417 31 1 3.6080 0.9697 0.1889 32 1 4.2603 1.3967 1.7919 33 1 6.1127 0.7664 0.3269 34 1 5.3039 -0.7647 -0.0867 35 1 7.3208 -2.0036 0.7551 36 1 8.0954 -0.4611 1.1901 37 1 7.8946 -1.7345 2.4180 38 1 5.8098 0.1902 3.8377 39 1 6.2191 2.8376 4.1307 40 1 7.6406 1.9528 4.7344 41 1 9.5692 7.5468 5.7694 42 1 5.6297 -2.2952 3.2782 43 1 5.0238 -2.5369 1.6218 44 1 3.9490 -0.5584 3.6845 45 1 3.1310 -2.0257 3.0887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073229184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -43.266960 kcal Electronic energy + Delta-G solvation = -27589.942210 eV Core-core repulsion = 23733.909099 eV Total energy + Delta-G solvation = -3856.033111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25966 -39.92123 -37.73991 -37.06707 -34.96141 -33.65088 -32.48902 -32.23154 -31.54025 -29.08177 -28.54576 -25.89030 -25.65938 -23.81981 -23.63055 -21.60124 -20.63760 -19.36741 -18.30652 -17.90753 -17.83112 -16.60837 -16.42146 -15.84339 -15.36081 -15.26381 -15.01516 -14.74283 -14.52217 -14.30793 -14.15248 -13.87070 -13.73240 -13.46181 -13.32146 -13.21996 -13.06611 -12.83687 -12.65894 -12.51670 -12.28824 -12.18958 -12.08180 -11.95790 -11.80692 -11.54199 -11.31577 -11.16727 -11.05095 -10.89934 -10.64909 -10.24066 -9.89941 -9.40540 -9.23634 -9.05234 -8.94049 -8.55860 -6.97077 -6.33423 -4.05560 1.77576 2.22184 2.25197 2.60297 2.69721 2.87276 3.23362 3.29122 3.43119 3.45714 3.58696 3.87734 4.24050 4.28220 4.29707 4.34275 4.50549 4.55164 4.66114 4.68897 4.84529 4.99127 5.05730 5.07429 5.17689 5.21922 5.26387 5.33824 5.37402 5.50077 5.56494 5.58074 5.65282 5.69081 5.73155 5.78242 5.86097 5.95105 6.13009 6.23321 6.53935 6.83656 7.00364 7.54560 7.58539 7.89553 8.37214 8.41630 9.12658 10.75862 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002700 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.642129 B =10366.660498 C =10734.143552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 H 0.138 0.862 4 C 0.210 3.790 5 N -0.406 5.406 6 C 0.527 3.473 7 O -0.524 6.524 8 N -0.603 5.603 9 C 0.104 3.896 10 C -0.147 4.147 11 C 0.181 3.819 12 C -0.164 4.164 13 N -0.730 5.730 14 C 0.534 3.466 15 O -0.514 6.514 16 C -0.126 4.126 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.137 4.137 27 C 0.111 3.889 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.398 0.602 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 -16.022 -7.706 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.040 4.040 3 H 0.155 0.845 4 C -0.109 4.109 5 N -0.081 5.081 6 C 0.312 3.688 7 O -0.399 6.399 8 N -0.337 5.337 9 C -0.019 4.019 10 C -0.186 4.186 11 C 0.095 3.905 12 C -0.222 4.222 13 N -0.385 5.385 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.277 4.277 17 S 0.087 5.913 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.175 4.175 27 C -0.011 4.011 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.233 0.767 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.299 -16.843 -10.482 23.883 hybrid contribution -0.364 0.541 1.618 1.745 sum -13.663 -16.302 -8.864 23.043 Atomic orbital electron populations 1.21670 0.88979 1.04432 1.04039 1.19011 0.99560 1.00014 0.85443 0.84458 1.28301 0.93995 0.94342 0.94259 1.81271 1.07812 1.08162 1.10896 1.19946 0.81485 0.82490 0.84887 1.90737 1.55332 1.34833 1.59046 1.48154 1.14491 1.37298 1.33709 1.21822 0.91349 0.90046 0.98660 1.22290 0.96157 1.02547 0.97606 1.20173 0.95277 0.87591 0.87461 1.22214 0.96578 1.01861 1.01545 1.46178 1.52303 1.22988 1.17020 1.20229 0.77532 0.81322 0.88862 1.90638 1.46172 1.75942 1.26068 1.23299 1.05140 0.99056 1.00157 1.84767 1.61580 1.21274 1.23719 1.22309 1.36595 1.08612 0.99465 0.89427 1.24717 0.95237 0.94973 0.96387 1.69933 1.40353 1.13244 1.28118 0.86738 0.80482 0.81200 0.83425 1.19216 1.19971 1.15930 1.22244 0.94688 0.97613 1.02998 1.21650 0.94944 0.96513 0.88003 0.89830 0.90698 0.90657 0.89780 0.89951 0.87565 0.91086 0.92215 0.89703 0.92435 0.76730 0.88660 0.88593 0.91908 0.89533 0.89953 0.90824 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 8.57 37.16 0.32 -0.36 16 2 C -0.02 -0.10 2.29 -94.56 -0.22 -0.32 16 3 H 0.14 0.49 6.39 -51.93 -0.33 0.16 16 4 C 0.21 1.86 14.30 -20.76 -0.30 1.57 16 5 N -0.41 -4.70 18.54 42.15 0.78 -3.92 16 6 C 0.53 4.58 6.78 -10.99 -0.07 4.51 16 7 O -0.52 -6.08 15.60 5.56 0.09 -6.00 16 8 N -0.60 -4.78 2.98 -173.03 -0.52 -5.30 16 9 C 0.10 0.82 5.97 -3.93 -0.02 0.80 16 10 C -0.15 -1.41 4.65 -26.84 -0.12 -1.54 16 11 C 0.18 1.66 0.66 -131.78 -0.09 1.58 16 12 C -0.16 -1.70 8.40 37.16 0.31 -1.39 16 13 N -0.73 -7.37 4.10 -47.57 -0.20 -7.57 16 14 C 0.53 7.91 7.27 -10.99 -0.08 7.83 16 15 O -0.51 -9.21 12.08 5.55 0.07 -9.14 16 16 C -0.13 -2.17 6.16 36.00 0.22 -1.95 16 17 S -0.14 -3.31 18.55 -107.50 -1.99 -5.30 16 18 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 19 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 20 C 0.10 2.72 5.50 -17.43 -0.10 2.62 16 21 N -0.88 -25.95 13.97 55.49 0.78 -25.18 16 22 Si 0.86 21.11 27.74 -169.99 -4.71 16.40 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.24 -5.77 6.74 56.52 0.38 -5.38 16 26 C -0.14 -0.95 4.96 -26.61 -0.13 -1.09 16 27 C 0.11 0.80 6.15 -3.71 -0.02 0.78 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.53 5.30 -51.93 -0.28 0.26 16 32 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 33 H 0.11 1.31 6.20 -51.93 -0.32 0.98 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 3.11 7.27 -40.82 -0.30 2.81 16 39 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.46 6.94 -51.93 -0.36 0.10 16 45 H 0.10 0.77 7.04 -51.93 -0.37 0.41 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -34.63 376.87 -6.49 -41.12 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.47 Total: 0.31 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.01 Total: -1.10 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.85 Total: -41.96 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.15 Total: -15.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -1.99 Total: -5.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.63 -6.49 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073229184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.147 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds