Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.47200 * 109.47089 * 240.00398 * 2 1 3 5 5 N 2.60798 * 109.47250 * 240.00219 * 2 1 3 6 6 C 1.50697 * 109.46971 * 120.00124 * 2 1 3 7 7 O 1.21279 * 120.00487 * 22.87550 * 6 2 1 8 8 N 1.34776 * 119.99881 * 202.87164 * 6 2 1 9 9 C 1.46933 * 120.63074 * 4.78641 * 8 6 2 10 10 C 1.52757 * 109.00618 * 233.57906 * 9 8 6 11 11 C 1.53036 * 109.38752 * 305.58841 * 10 9 8 12 12 C 1.52995 * 109.46311 * 181.26285 * 11 10 9 13 13 N 1.46501 * 109.44704 * 301.22849 * 11 10 9 14 14 C 1.34777 * 119.99969 * 300.05981 * 13 11 10 15 15 O 1.21284 * 119.99925 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00319 * 180.02562 * 14 13 11 17 17 S 1.81001 * 109.47516 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00118 * 179.97438 * 17 16 14 19 19 H 1.07992 * 120.00115 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99871 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00009 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99932 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47061 * 89.99829 * 22 20 18 24 24 H 1.48506 * 109.47104 * 209.99701 * 22 20 18 25 25 H 1.48498 * 109.47305 * 329.99514 * 22 20 18 26 26 C 1.53037 * 109.53841 * 61.23885 * 11 10 9 27 27 C 1.46924 * 120.63467 * 185.06098 * 8 6 2 28 28 H 1.08994 * 109.47075 * 294.99480 * 1 2 3 29 29 H 1.09004 * 109.47027 * 174.99511 * 1 2 3 30 30 H 1.08998 * 109.47102 * 54.99335 * 1 2 3 31 31 H 1.09005 * 109.58341 * 353.41418 * 9 8 6 32 32 H 1.08995 * 109.58496 * 113.83986 * 9 8 6 33 33 H 1.09004 * 109.56287 * 185.54983 * 10 9 8 34 34 H 1.09007 * 109.38690 * 65.51761 * 10 9 8 35 35 H 1.09005 * 109.46991 * 299.93017 * 12 11 10 36 36 H 1.08998 * 109.47484 * 59.92899 * 12 11 10 37 37 H 1.08998 * 109.47230 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00617 * 120.06208 * 13 11 10 39 39 H 1.09000 * 109.47064 * 299.99726 * 16 14 13 40 40 H 1.08998 * 109.47183 * 59.99493 * 16 14 13 41 41 H 0.97000 * 120.00313 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.50238 * 178.68714 * 26 11 10 43 43 H 1.08993 * 109.52574 * 58.60526 * 26 11 10 44 44 H 1.08998 * 109.58962 * 246.16301 * 27 8 6 45 45 H 1.09003 * 109.58145 * 6.58068 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 1.3221 -1.5112 1.8008 8 7 3.2708 -0.4560 1.6970 9 6 4.1037 0.5858 1.0807 10 6 5.4522 -0.0191 0.6944 11 6 6.0813 -0.6829 1.9214 12 6 7.4462 -1.2620 1.5441 13 7 6.2501 0.3132 2.9823 14 6 7.0172 1.4008 2.7696 15 8 7.5682 1.5545 1.7001 16 6 7.1914 2.4253 3.8609 17 16 8.2695 3.7553 3.2737 18 6 8.2983 4.7808 4.7061 19 1 7.7445 4.4931 5.5874 20 6 9.0337 5.9580 4.7021 21 7 9.0556 6.7240 5.7723 22 14 9.9921 6.4554 3.1778 23 1 9.1285 7.2836 2.2984 24 1 11.1875 7.2400 3.5788 25 1 10.4224 5.2379 2.4445 26 6 5.1701 -1.8076 2.4185 27 6 3.8163 -1.2191 2.8279 28 1 -0.3633 0.4342 0.9314 29 1 -0.3633 -1.0238 -0.0897 30 1 -0.3633 0.5895 -0.8417 31 1 3.6080 0.9697 0.1889 32 1 4.2603 1.3967 1.7919 33 1 6.1127 0.7664 0.3269 34 1 5.3039 -0.7647 -0.0867 35 1 7.3208 -2.0036 0.7551 36 1 8.0954 -0.4611 1.1901 37 1 7.8946 -1.7345 2.4180 38 1 5.8098 0.1902 3.8377 39 1 6.2191 2.8376 4.1307 40 1 7.6406 1.9528 4.7344 41 1 9.5692 7.5468 5.7694 42 1 5.6297 -2.2952 3.2782 43 1 5.0238 -2.5369 1.6218 44 1 3.9490 -0.5584 3.6845 45 1 3.1310 -2.0257 3.0887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073229184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -66.659853 kcal Electronic energy + Delta-G solvation = -27590.956602 eV Core-core repulsion = 23733.909099 eV Total energy + Delta-G solvation = -3857.047503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02776 -40.83222 -38.67120 -37.83236 -35.80129 -34.64284 -34.25401 -33.26718 -32.18274 -30.23755 -29.42089 -27.81396 -26.41517 -24.53895 -24.29238 -22.55187 -21.45960 -20.22108 -19.88108 -18.91187 -18.44463 -17.87439 -17.16713 -17.06177 -16.66721 -16.45780 -16.07413 -15.68434 -15.42104 -15.19317 -15.14071 -14.96210 -14.74147 -14.62745 -14.47298 -14.01149 -13.96928 -13.79421 -13.66619 -13.30990 -13.14040 -13.12873 -12.98722 -12.81917 -12.80410 -12.70756 -12.56219 -12.38061 -12.21781 -11.94426 -11.83738 -11.68171 -11.14277 -10.93187 -10.59103 -10.47471 -10.13823 -9.71527 -8.93622 -8.48859 -6.18021 1.03991 1.09470 1.33341 1.49396 1.56226 1.57146 1.59793 1.67459 1.95748 2.25711 2.29948 2.76057 2.81726 2.89891 3.26801 3.56013 3.64702 3.81966 3.88288 3.94313 4.00452 4.03270 4.24935 4.29977 4.36068 4.45769 4.55499 4.66394 4.70951 4.77021 4.80035 4.83310 4.87584 4.94692 4.95668 5.08452 5.10216 5.27498 5.34668 5.44676 5.61137 5.73453 6.14915 6.17932 6.32949 6.58852 6.92733 6.96916 7.30871 8.63614 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002700 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.642129 B =10366.660498 C =10734.143552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.012 4.012 3 H 0.171 0.829 4 C 0.233 3.767 5 N -0.456 5.456 6 C 0.526 3.474 7 O -0.555 6.555 8 N -0.600 5.600 9 C 0.106 3.894 10 C -0.144 4.144 11 C 0.182 3.818 12 C -0.161 4.161 13 N -0.705 5.705 14 C 0.542 3.458 15 O -0.546 6.546 16 C -0.113 4.113 17 S -0.170 6.170 18 C -0.527 4.527 19 H 0.061 0.939 20 C 0.044 3.956 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.235 1.235 26 C -0.125 4.125 27 C 0.107 3.893 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.276 0.724 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 -16.832 -8.091 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.036 4.036 3 H 0.188 0.812 4 C -0.085 4.085 5 N -0.133 5.133 6 C 0.312 3.688 7 O -0.432 6.432 8 N -0.333 5.333 9 C -0.016 4.016 10 C -0.183 4.183 11 C 0.096 3.904 12 C -0.219 4.219 13 N -0.360 5.360 14 C 0.327 3.673 15 O -0.423 6.423 16 C -0.264 4.264 17 S 0.057 5.943 18 C -0.675 4.675 19 H 0.079 0.921 20 C -0.161 4.161 21 N -0.558 5.558 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.189 1.189 25 H -0.159 1.159 26 C -0.164 4.164 27 C -0.015 4.015 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.332 -17.679 -10.844 25.210 hybrid contribution -0.137 0.662 1.807 1.929 sum -14.468 -17.017 -9.037 24.095 Atomic orbital electron populations 1.21705 0.87908 1.03952 1.05395 1.19234 1.00347 1.00947 0.83110 0.81176 1.28698 0.92611 0.93180 0.94018 1.81297 1.09571 1.09797 1.12620 1.20271 0.81319 0.82032 0.85207 1.90731 1.56133 1.36187 1.60192 1.48201 1.14260 1.37107 1.33690 1.21812 0.90661 0.89718 0.99426 1.22199 0.96565 1.01833 0.97735 1.20283 0.95324 0.87744 0.87072 1.22165 0.96527 1.01075 1.02175 1.45916 1.50569 1.21479 1.18020 1.19763 0.78073 0.81891 0.87551 1.90655 1.47843 1.76775 1.27043 1.23297 1.04354 0.97535 1.01261 1.84663 1.64060 1.23284 1.22338 1.22493 1.35600 1.09308 1.00086 0.92083 1.25570 0.96304 0.95176 0.99056 1.70019 1.41678 1.14030 1.30056 0.85868 0.79539 0.80889 0.80076 1.18614 1.18865 1.15885 1.22171 0.93976 0.96487 1.03744 1.21757 0.94738 0.96737 0.88251 0.88991 0.92278 0.88641 0.87991 0.90140 0.90159 0.90966 0.91016 0.92928 0.91761 0.74898 0.86959 0.87452 0.91486 0.87564 0.89911 0.89409 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.57 71.98 0.62 -0.42 16 2 C -0.01 -0.12 2.29 -13.35 -0.03 -0.15 16 3 H 0.17 0.59 6.39 -2.39 -0.02 0.58 16 4 C 0.23 3.76 14.30 89.44 1.28 5.04 16 5 N -0.46 -10.22 18.54 20.01 0.37 -9.85 16 6 C 0.53 7.99 6.78 87.66 0.59 8.58 16 7 O -0.55 -12.00 15.60 -3.03 -0.05 -12.05 16 8 N -0.60 -7.97 2.98 -819.74 -2.44 -10.41 16 9 C 0.11 1.42 5.97 86.22 0.51 1.94 16 10 C -0.14 -2.54 4.65 30.53 0.14 -2.40 16 11 C 0.18 2.93 0.66 3.63 0.00 2.93 16 12 C -0.16 -3.10 8.40 71.98 0.60 -2.50 16 13 N -0.70 -12.48 4.10 -422.81 -1.73 -14.22 16 14 C 0.54 15.16 7.27 87.66 0.64 15.79 16 15 O -0.55 -19.21 12.08 -3.04 -0.04 -19.24 16 16 C -0.11 -3.74 6.16 71.24 0.44 -3.31 16 17 S -0.17 -7.96 18.55 -56.49 -1.05 -9.01 16 18 C -0.53 -29.41 10.04 67.95 0.68 -28.73 16 19 H 0.06 3.61 8.03 -2.91 -0.02 3.58 16 20 C 0.04 2.51 5.50 84.86 0.47 2.98 16 21 N -0.92 -54.89 13.97 21.65 0.30 -54.58 16 22 Si 0.91 43.61 27.74 68.60 1.90 45.51 16 23 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.24 -11.11 6.74 99.48 0.67 -10.44 16 26 C -0.13 -1.37 4.96 30.67 0.15 -1.22 16 27 C 0.11 1.24 6.15 86.36 0.53 1.77 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.68 8.04 -2.38 -0.02 0.66 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 1.00 5.30 -2.38 -0.01 0.98 16 32 H 0.08 1.17 7.74 -2.39 -0.02 1.15 16 33 H 0.08 1.92 6.20 -2.38 -0.01 1.91 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.05 1.40 6.17 -2.39 -0.01 1.38 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.41 5.02 7.27 -92.71 -0.67 4.34 16 39 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.11 3.33 8.14 -2.40 -0.02 3.31 16 41 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 0.78 6.94 -2.39 -0.02 0.76 16 45 H 0.09 1.26 7.04 -2.39 -0.02 1.24 16 Total: -1.00 -76.93 376.87 4.21 -72.72 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.31 Total: 10.83 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.63 Total: 0.31 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -3.50 Total: -89.06 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.08 Total: -31.29 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.51 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.05 Total: -9.01 kcal Total: -76.93 4.21 -72.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073229184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.057 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds