Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47130 * 2 1 4 4 C 1.47198 * 109.47439 * 120.00190 * 2 1 3 5 5 N 2.60796 * 109.47389 * 119.99919 * 2 1 3 6 6 C 1.50699 * 109.47151 * 240.00243 * 2 1 3 7 7 O 1.21284 * 120.00156 * 334.95875 * 6 2 1 8 8 N 1.34773 * 120.00400 * 154.95582 * 6 2 1 9 9 C 1.46923 * 120.62941 * 4.86943 * 8 6 2 10 10 C 1.53626 * 108.54747 * 126.36817 * 9 8 6 11 11 C 1.53038 * 109.24179 * 54.85382 * 10 9 8 12 12 C 1.52998 * 109.46005 * 178.49435 * 11 10 9 13 13 N 1.46495 * 109.45778 * 58.53460 * 11 10 9 14 14 C 1.34776 * 120.00432 * 59.93373 * 13 11 10 15 15 O 1.21287 * 119.99431 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00712 * 180.02562 * 14 13 11 17 17 S 1.80995 * 109.47583 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00118 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00113 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99977 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46892 * 90.00354 * 22 20 18 24 24 H 1.48500 * 109.47132 * 210.00051 * 22 20 18 25 25 H 1.48493 * 109.47161 * 330.00216 * 22 20 18 26 26 C 1.53039 * 109.53714 * 298.51633 * 11 10 9 27 27 C 1.46923 * 120.63330 * 185.14638 * 8 6 2 28 28 H 1.08996 * 109.47270 * 295.03456 * 1 2 3 29 29 H 1.08998 * 109.47026 * 175.03187 * 1 2 3 30 30 H 1.09000 * 109.47500 * 55.03414 * 1 2 3 31 31 H 1.09007 * 109.58808 * 246.19995 * 9 8 6 32 32 H 1.09007 * 109.58837 * 6.62517 * 9 8 6 33 33 H 1.09002 * 109.62921 * 294.86240 * 10 9 8 34 34 H 1.08998 * 109.46118 * 174.74263 * 10 9 8 35 35 H 1.09001 * 109.47366 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47024 * 300.07197 * 12 11 10 37 37 H 1.08995 * 109.47099 * 60.06904 * 12 11 10 38 38 H 0.96996 * 120.00306 * 239.93018 * 13 11 10 39 39 H 1.09007 * 109.46517 * 299.99934 * 16 14 13 40 40 H 1.08996 * 109.47021 * 59.99488 * 16 14 13 41 41 H 0.96996 * 119.99403 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.49791 * 301.40787 * 26 11 10 43 43 H 1.09006 * 109.52020 * 181.33417 * 26 11 10 44 44 H 1.09003 * 109.58786 * 353.37550 * 27 8 6 45 45 H 1.09004 * 109.58939 * 113.80013 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7103 -1.2305 7 8 1.3373 -1.5398 -1.7781 8 7 3.2539 -0.4239 -1.7225 9 6 4.1496 0.4988 -1.0119 10 6 5.4981 -0.2030 -0.7901 11 6 6.0392 -0.6925 -2.1354 12 6 7.4001 -1.3593 -1.9252 13 7 6.1891 0.4463 -3.0446 14 6 7.0046 1.4679 -2.7165 15 8 7.6141 1.4446 -1.6681 16 6 7.1585 2.6396 -3.6515 17 16 8.3113 3.8366 -2.9344 18 6 8.3038 5.0639 -4.1986 19 1 7.6962 4.9267 -5.0808 20 6 9.0788 6.2072 -4.0606 21 7 9.8197 6.3742 -2.9855 22 14 9.0714 7.5080 -5.4012 23 1 8.0019 8.4999 -5.1225 24 1 10.3877 8.1948 -5.4318 25 1 8.8187 6.8635 -6.7149 26 6 5.0640 -1.7042 -2.7417 27 6 3.7128 -1.0237 -2.9828 28 1 -0.3633 0.4349 0.9311 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3634 0.5889 -0.8421 31 1 4.2967 1.3983 -1.6098 32 1 3.7118 0.7647 -0.0497 33 1 5.3629 -1.0530 -0.1213 34 1 6.2045 0.4993 -0.3476 35 1 7.7859 -1.7076 -2.8833 36 1 8.0948 -0.6389 -1.4932 37 1 7.2888 -2.2070 -1.2492 38 1 5.7015 0.4651 -3.8829 39 1 7.5447 2.2916 -4.6096 40 1 6.1889 3.1144 -3.8015 41 1 10.3616 7.1729 -2.8893 42 1 4.9329 -2.5401 -2.0546 43 1 5.4610 -2.0704 -3.6885 44 1 2.9867 -1.7628 -3.3215 45 1 3.8250 -0.2459 -3.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073229185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -44.340801 kcal Electronic energy + Delta-G solvation = -27522.603705 eV Core-core repulsion = 23666.524029 eV Total energy + Delta-G solvation = -3856.079676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19106 -39.84106 -37.64409 -37.02406 -34.89488 -33.60371 -32.47335 -32.12643 -31.45117 -28.95995 -28.44334 -25.85621 -25.52585 -23.77924 -23.57189 -21.49741 -20.56461 -19.30101 -18.25146 -17.87412 -17.79105 -16.51853 -16.37795 -15.76464 -15.27269 -15.15757 -14.84527 -14.66187 -14.54207 -14.23506 -14.14485 -13.85002 -13.70211 -13.37216 -13.27832 -13.16128 -12.97137 -12.68684 -12.63030 -12.37299 -12.26068 -12.08873 -12.01671 -11.86282 -11.77658 -11.48005 -11.11731 -11.08212 -11.06779 -10.83771 -10.78945 -10.22085 -9.85811 -9.28618 -9.16676 -9.10579 -8.86432 -8.29191 -6.54961 -6.26396 -3.97033 1.82869 2.23624 2.28756 2.64542 2.95729 3.00609 3.18837 3.24575 3.28082 3.46408 3.63451 3.91774 4.16135 4.32733 4.34017 4.40562 4.54795 4.60861 4.72358 4.87902 5.00237 5.08809 5.09541 5.17603 5.20574 5.27642 5.38052 5.39358 5.49927 5.60200 5.61843 5.65862 5.68550 5.79973 5.81963 5.85540 5.93308 6.07697 6.19215 6.31258 6.63631 6.87156 7.04383 7.55143 7.61685 7.65479 8.30541 8.54990 9.19348 10.80905 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.002621 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.788495 B =10681.666670 C =11215.195284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.015 4.015 3 H 0.138 0.862 4 C 0.208 3.792 5 N -0.405 5.405 6 C 0.527 3.473 7 O -0.526 6.526 8 N -0.603 5.603 9 C 0.105 3.895 10 C -0.146 4.146 11 C 0.181 3.819 12 C -0.164 4.164 13 N -0.732 5.732 14 C 0.535 3.465 15 O -0.511 6.511 16 C -0.155 4.155 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.136 4.136 27 C 0.111 3.889 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.396 0.604 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.299 -14.336 0.730 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 H 0.155 0.845 4 C -0.111 4.111 5 N -0.081 5.081 6 C 0.312 3.688 7 O -0.401 6.401 8 N -0.336 5.336 9 C -0.018 4.018 10 C -0.185 4.185 11 C 0.095 3.905 12 C -0.222 4.222 13 N -0.387 5.387 14 C 0.322 3.678 15 O -0.386 6.386 16 C -0.306 4.306 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.175 4.175 27 C -0.011 4.011 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.231 0.769 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.936 -15.521 3.681 21.853 hybrid contribution -0.886 1.212 -2.844 3.215 sum -15.822 -14.309 0.838 21.349 Atomic orbital electron populations 1.21691 0.89012 1.04855 1.03742 1.19016 0.99547 0.99936 0.85413 0.84498 1.28327 0.94061 0.94369 0.94295 1.81274 1.07762 1.08132 1.10896 1.19953 0.81359 0.82530 0.84970 1.90730 1.56152 1.32629 1.60605 1.48165 1.14933 1.46179 1.24346 1.21977 0.90119 0.92570 0.97116 1.22429 0.96497 1.02198 0.97344 1.20164 0.95237 0.85690 0.89435 1.22215 0.96883 1.01049 1.02060 1.46213 1.48559 1.20560 1.23378 1.20254 0.77907 0.82638 0.87030 1.90643 1.44837 1.78564 1.24527 1.23552 1.06201 0.98835 1.01993 1.85373 1.53805 1.15568 1.28396 1.22859 1.32373 1.06397 1.06818 0.90980 1.24989 0.94523 0.97647 0.96384 1.70013 1.26108 1.27643 1.26487 0.86181 0.77716 0.80658 0.81031 1.20257 1.20754 1.19703 1.22235 0.94293 0.98256 1.02707 1.21656 0.96127 0.98363 0.84996 0.90717 0.90348 0.89958 0.89933 0.89968 0.91081 0.87547 0.92493 0.89639 0.92268 0.76927 0.89366 0.89399 0.92165 0.89950 0.89640 0.88388 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 8.78 37.16 0.33 -0.39 16 2 C -0.01 -0.10 2.28 -94.56 -0.22 -0.31 16 3 H 0.14 0.55 6.74 -51.92 -0.35 0.20 16 4 C 0.21 1.95 13.87 -20.76 -0.29 1.66 16 5 N -0.41 -4.90 18.54 42.15 0.78 -4.12 16 6 C 0.53 4.76 6.76 -10.99 -0.07 4.68 16 7 O -0.53 -6.23 15.41 5.55 0.09 -6.14 16 8 N -0.60 -5.02 2.97 -172.50 -0.51 -5.53 16 9 C 0.10 0.91 5.89 -3.49 -0.02 0.88 16 10 C -0.15 -1.52 4.68 -26.39 -0.12 -1.65 16 11 C 0.18 1.78 0.66 -131.78 -0.09 1.69 16 12 C -0.16 -1.82 8.40 37.16 0.31 -1.50 16 13 N -0.73 -7.90 4.09 -47.57 -0.19 -8.09 16 14 C 0.54 8.45 7.27 -10.99 -0.08 8.37 16 15 O -0.51 -9.81 12.08 5.55 0.07 -9.74 16 16 C -0.16 -2.81 6.16 36.00 0.22 -2.59 16 17 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 18 C -0.54 -14.66 9.50 30.94 0.29 -14.37 16 19 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 22 Si 0.92 20.79 29.55 -169.99 -5.02 15.77 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.14 -1.01 4.96 -26.61 -0.13 -1.15 16 27 C 0.11 0.83 6.16 -3.71 -0.02 0.81 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.53 7.68 -51.93 -0.40 0.13 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.76 7.74 -51.92 -0.40 0.36 16 32 H 0.08 0.61 5.26 -51.93 -0.27 0.33 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 1.42 6.20 -51.93 -0.32 1.10 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 3.31 7.27 -40.82 -0.30 3.01 16 39 H 0.09 1.51 8.14 -51.91 -0.42 1.09 16 40 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.79 7.00 -51.93 -0.36 0.43 16 45 H 0.07 0.46 6.94 -51.93 -0.36 0.10 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -34.80 378.99 -6.98 -41.78 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.44 Total: 0.66 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.02 Total: -1.91 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.81 Total: -42.43 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.15 Total: -15.89 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.80 -6.98 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073229185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.562 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds