Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47130 * 2 1 4 4 C 1.47198 * 109.47439 * 120.00190 * 2 1 3 5 5 N 2.60796 * 109.47389 * 119.99919 * 2 1 3 6 6 C 1.50699 * 109.47151 * 240.00243 * 2 1 3 7 7 O 1.21284 * 120.00156 * 334.95875 * 6 2 1 8 8 N 1.34773 * 120.00400 * 154.95582 * 6 2 1 9 9 C 1.46923 * 120.62941 * 4.86943 * 8 6 2 10 10 C 1.53626 * 108.54747 * 126.36817 * 9 8 6 11 11 C 1.53038 * 109.24179 * 54.85382 * 10 9 8 12 12 C 1.52998 * 109.46005 * 178.49435 * 11 10 9 13 13 N 1.46495 * 109.45778 * 58.53460 * 11 10 9 14 14 C 1.34776 * 120.00432 * 59.93373 * 13 11 10 15 15 O 1.21287 * 119.99431 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00712 * 180.02562 * 14 13 11 17 17 S 1.80995 * 109.47583 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00118 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00113 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99977 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46892 * 90.00354 * 22 20 18 24 24 H 1.48500 * 109.47132 * 210.00051 * 22 20 18 25 25 H 1.48493 * 109.47161 * 330.00216 * 22 20 18 26 26 C 1.53039 * 109.53714 * 298.51633 * 11 10 9 27 27 C 1.46923 * 120.63330 * 185.14638 * 8 6 2 28 28 H 1.08996 * 109.47270 * 295.03456 * 1 2 3 29 29 H 1.08998 * 109.47026 * 175.03187 * 1 2 3 30 30 H 1.09000 * 109.47500 * 55.03414 * 1 2 3 31 31 H 1.09007 * 109.58808 * 246.19995 * 9 8 6 32 32 H 1.09007 * 109.58837 * 6.62517 * 9 8 6 33 33 H 1.09002 * 109.62921 * 294.86240 * 10 9 8 34 34 H 1.08998 * 109.46118 * 174.74263 * 10 9 8 35 35 H 1.09001 * 109.47366 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47024 * 300.07197 * 12 11 10 37 37 H 1.08995 * 109.47099 * 60.06904 * 12 11 10 38 38 H 0.96996 * 120.00306 * 239.93018 * 13 11 10 39 39 H 1.09007 * 109.46517 * 299.99934 * 16 14 13 40 40 H 1.08996 * 109.47021 * 59.99488 * 16 14 13 41 41 H 0.96996 * 119.99403 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.49791 * 301.40787 * 26 11 10 43 43 H 1.09006 * 109.52020 * 181.33417 * 26 11 10 44 44 H 1.09003 * 109.58786 * 353.37550 * 27 8 6 45 45 H 1.09004 * 109.58939 * 113.80013 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7103 -1.2305 7 8 1.3373 -1.5398 -1.7781 8 7 3.2539 -0.4239 -1.7225 9 6 4.1496 0.4988 -1.0119 10 6 5.4981 -0.2030 -0.7901 11 6 6.0392 -0.6925 -2.1354 12 6 7.4001 -1.3593 -1.9252 13 7 6.1891 0.4463 -3.0446 14 6 7.0046 1.4679 -2.7165 15 8 7.6141 1.4446 -1.6681 16 6 7.1585 2.6396 -3.6515 17 16 8.3113 3.8366 -2.9344 18 6 8.3038 5.0639 -4.1986 19 1 7.6962 4.9267 -5.0808 20 6 9.0788 6.2072 -4.0606 21 7 9.8197 6.3742 -2.9855 22 14 9.0714 7.5080 -5.4012 23 1 8.0019 8.4999 -5.1225 24 1 10.3877 8.1948 -5.4318 25 1 8.8187 6.8635 -6.7149 26 6 5.0640 -1.7042 -2.7417 27 6 3.7128 -1.0237 -2.9828 28 1 -0.3633 0.4349 0.9311 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3634 0.5889 -0.8421 31 1 4.2967 1.3983 -1.6098 32 1 3.7118 0.7647 -0.0497 33 1 5.3629 -1.0530 -0.1213 34 1 6.2045 0.4993 -0.3476 35 1 7.7859 -1.7076 -2.8833 36 1 8.0948 -0.6389 -1.4932 37 1 7.2888 -2.2070 -1.2492 38 1 5.7015 0.4651 -3.8829 39 1 7.5447 2.2916 -4.6096 40 1 6.1889 3.1144 -3.8015 41 1 10.3616 7.1729 -2.8893 42 1 4.9329 -2.5401 -2.0546 43 1 5.4610 -2.0704 -3.6885 44 1 2.9867 -1.7628 -3.3215 45 1 3.8250 -0.2459 -3.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073229185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -67.746330 kcal Electronic energy + Delta-G solvation = -27523.618644 eV Core-core repulsion = 23666.524029 eV Total energy + Delta-G solvation = -3857.094616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00147 -40.80803 -38.63480 -37.83614 -35.78699 -34.54851 -34.24197 -33.22933 -32.14185 -30.16140 -29.40052 -27.61279 -26.41208 -24.56678 -24.26820 -22.50007 -21.43366 -20.21867 -19.82134 -18.90834 -18.44128 -17.80600 -17.14129 -16.84601 -16.68401 -16.40909 -16.04889 -15.76852 -15.37158 -15.21505 -15.14663 -14.77020 -14.67738 -14.55781 -14.33124 -14.01661 -13.96636 -13.75183 -13.59152 -13.16892 -13.12623 -13.07104 -12.88055 -12.81882 -12.79149 -12.68760 -12.56834 -12.35317 -12.23940 -11.93136 -11.68376 -11.67547 -11.11092 -10.94937 -10.53844 -10.20524 -10.11830 -9.70613 -8.60037 -8.31752 -6.07641 1.10675 1.31397 1.43871 1.50541 1.54302 1.56307 1.60668 1.73564 1.95293 2.28558 2.35931 2.81474 3.02734 3.26601 3.36587 3.58614 3.65907 3.83103 3.88835 3.97623 4.05336 4.06881 4.23919 4.34482 4.39918 4.45309 4.59755 4.65733 4.71426 4.77438 4.79555 4.83462 4.87282 4.94945 4.95764 5.09818 5.10492 5.27932 5.35175 5.44931 5.45505 5.64060 6.17209 6.22940 6.32584 6.64079 6.92580 7.10534 7.37750 8.76965 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.002621 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.788495 B =10681.666670 C =11215.195284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 H 0.170 0.830 4 C 0.231 3.769 5 N -0.457 5.457 6 C 0.526 3.474 7 O -0.554 6.554 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.144 4.144 11 C 0.182 3.818 12 C -0.162 4.162 13 N -0.705 5.705 14 C 0.540 3.460 15 O -0.549 6.549 16 C -0.132 4.132 17 S -0.146 6.146 18 C -0.544 4.544 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.994 3.006 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.125 4.125 27 C 0.107 3.893 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.270 0.730 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 -14.427 -1.475 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 H 0.187 0.813 4 C -0.087 4.087 5 N -0.134 5.134 6 C 0.312 3.688 7 O -0.432 6.432 8 N -0.332 5.332 9 C -0.013 4.013 10 C -0.183 4.183 11 C 0.096 3.904 12 C -0.220 4.220 13 N -0.360 5.360 14 C 0.326 3.674 15 O -0.426 6.426 16 C -0.283 4.283 17 S 0.082 5.918 18 C -0.692 4.692 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.816 3.184 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.183 1.183 26 C -0.163 4.163 27 C -0.015 4.015 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.976 -15.643 1.447 23.130 hybrid contribution -0.302 1.113 -2.156 2.445 sum -17.278 -14.530 -0.709 22.587 Atomic orbital electron populations 1.21725 0.87765 1.04278 1.05301 1.19268 1.00473 1.00812 0.83063 0.81313 1.28775 0.92646 0.93187 0.94088 1.81299 1.09565 1.09838 1.12684 1.20250 0.81172 0.82079 0.85264 1.90725 1.56906 1.33865 1.61674 1.48198 1.14650 1.45836 1.24513 1.21913 0.89268 0.92192 0.97944 1.22338 0.96866 1.01624 0.97507 1.20261 0.95379 0.85523 0.89217 1.22167 0.96727 1.00579 1.02513 1.45910 1.46831 1.19284 1.24005 1.19876 0.78448 0.83036 0.86050 1.90661 1.46673 1.79309 1.25988 1.23398 1.04829 0.97734 1.02340 1.85533 1.57277 1.18489 1.30541 1.23208 1.32277 1.06735 1.07020 0.90038 1.26067 0.93988 1.00178 0.98838 1.70178 1.27262 1.28494 1.28841 0.85017 0.77803 0.77489 0.78085 1.19302 1.20628 1.18266 1.22167 0.93472 0.97162 1.03539 1.21788 0.95807 0.98909 0.84978 0.89087 0.92016 0.88473 0.89972 0.88671 0.91036 0.90629 0.91650 0.93268 0.91008 0.74896 0.87837 0.87256 0.92127 0.89974 0.87468 0.88528 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.78 71.98 0.63 -0.48 16 2 C -0.01 -0.13 2.28 -13.35 -0.03 -0.16 16 3 H 0.17 0.79 6.74 -2.38 -0.02 0.78 16 4 C 0.23 4.04 13.87 89.44 1.24 5.28 16 5 N -0.46 -10.92 18.54 20.00 0.37 -10.55 16 6 C 0.53 8.35 6.76 87.66 0.59 8.94 16 7 O -0.55 -12.16 15.41 -3.04 -0.05 -12.21 16 8 N -0.60 -8.48 2.97 -818.05 -2.43 -10.90 16 9 C 0.11 1.68 5.89 86.51 0.51 2.19 16 10 C -0.14 -2.90 4.68 30.82 0.14 -2.76 16 11 C 0.18 3.27 0.66 3.63 0.00 3.27 16 12 C -0.16 -3.45 8.40 71.98 0.60 -2.85 16 13 N -0.71 -13.65 4.09 -422.82 -1.73 -15.38 16 14 C 0.54 16.59 7.27 87.66 0.64 17.22 16 15 O -0.55 -21.55 12.08 -3.05 -0.04 -21.59 16 16 C -0.13 -4.61 6.16 71.23 0.44 -4.17 16 17 S -0.15 -7.56 20.57 -56.49 -1.16 -8.72 16 18 C -0.54 -29.73 9.50 67.96 0.65 -29.08 16 19 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -54.50 13.22 21.65 0.29 -54.21 16 22 Si 0.99 42.25 29.55 68.60 2.03 44.27 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 C -0.13 -1.49 4.96 30.67 0.15 -1.34 16 27 C 0.11 1.27 6.16 86.36 0.53 1.80 16 28 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.75 7.68 -2.39 -0.02 0.74 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 1.32 7.74 -2.38 -0.02 1.30 16 32 H 0.10 1.21 5.26 -2.38 -0.01 1.20 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 2.07 6.20 -2.39 -0.01 2.05 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.45 6.17 -2.39 -0.01 1.43 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.41 5.37 7.27 -92.71 -0.67 4.70 16 39 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.11 3.37 8.14 -2.40 -0.02 3.35 16 41 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.10 1.28 7.00 -2.39 -0.02 1.27 16 45 H 0.09 0.78 6.94 -2.38 -0.02 0.76 16 Total: -1.00 -79.12 378.99 4.20 -74.92 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.35 Total: 15.26 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.57 Total: -0.89 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -3.50 Total: -91.05 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.08 Total: -33.79 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.16 Total: -8.72 kcal Total: -79.12 4.20 -74.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073229185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.178 kcal (2) G-P(sol) polarization free energy of solvation -79.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds