Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46893 * 2 1 4 4 C 1.53005 * 109.47214 * 119.99717 * 2 1 3 5 5 C 1.52994 * 109.46908 * 185.00283 * 4 2 1 6 6 N 1.46504 * 109.47209 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00428 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99962 * 5.13309 * 7 6 5 9 9 C 1.46676 * 120.00239 * 185.12611 * 7 6 5 10 10 C 1.37873 * 126.23099 * 354.29074 * 9 7 6 11 11 C 1.39831 * 107.08277 * 180.26080 * 10 9 7 12 12 C 1.35451 * 107.86681 * 0.02562 * 11 10 9 13 13 N 1.35523 * 108.87367 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.68207 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47323 * 240.00000 * 2 1 3 16 16 C 1.34775 * 120.00018 * 84.99555 * 15 2 1 17 17 O 1.21280 * 119.99975 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99878 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.46971 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99930 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00356 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00170 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99679 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00061 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47125 * 90.00047 * 24 22 20 26 26 H 1.48507 * 109.46769 * 209.99742 * 24 22 20 27 27 H 1.48496 * 109.47063 * 329.99785 * 24 22 20 28 28 H 1.09000 * 109.47957 * 299.99841 * 1 2 3 29 29 H 1.09007 * 109.47481 * 60.00302 * 1 2 3 30 30 H 1.09007 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46982 * 65.00263 * 4 2 1 32 32 H 1.09000 * 109.46914 * 305.00010 * 4 2 1 33 33 H 1.09005 * 109.47193 * 60.00474 * 5 4 2 34 34 H 1.08998 * 109.47442 * 300.00301 * 5 4 2 35 35 H 0.96996 * 119.99614 * 0.02562 * 6 5 4 36 36 H 1.08001 * 126.45873 * 0.24211 * 10 9 7 37 37 H 1.07999 * 126.06655 * 180.02562 * 11 10 9 38 38 H 1.08005 * 125.56167 * 179.97438 * 12 11 10 39 39 H 1.08994 * 109.47110 * 273.91676 * 14 13 12 40 40 H 1.08996 * 109.46962 * 33.91896 * 14 13 12 41 41 H 1.09000 * 109.46986 * 153.91421 * 14 13 12 42 42 H 0.97001 * 119.99682 * 264.99451 * 15 2 1 43 43 H 1.08997 * 109.47283 * 299.99940 * 18 16 15 44 44 H 1.08993 * 109.47070 * 60.00357 * 18 16 15 45 45 H 0.97004 * 119.99832 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6131 1.3137 6 7 4.0531 -1.3032 2.5102 7 6 5.3740 -1.3392 2.7755 8 8 6.1527 -0.7208 2.0738 9 6 5.8731 -2.1237 3.9099 10 6 5.1047 -2.7788 4.8486 11 6 5.9854 -3.3898 5.7465 12 6 7.2484 -3.1033 5.3498 13 7 7.1940 -2.3338 4.2355 14 6 8.3487 -1.8131 3.4993 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0183 -2.3571 17 8 1.8589 1.1585 -2.4115 18 6 2.6499 -0.7286 -3.5874 19 16 2.7113 0.4346 -4.9729 20 6 3.3143 -0.6307 -6.2402 21 1 3.5238 -1.6670 -6.0202 22 6 3.5212 -0.1376 -7.5211 23 7 3.2664 1.1256 -7.7891 24 14 4.1599 -1.2671 -8.8648 25 1 3.0140 -1.9032 -9.5629 26 1 4.9561 -0.4773 -9.8383 27 1 5.0174 -2.3186 -8.2614 28 1 -0.3635 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7714 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9994 -1.0726 0.4260 35 1 3.4258 -1.7347 3.1112 36 1 4.0258 -2.8132 4.8840 37 1 5.7079 -3.9847 6.6041 38 1 8.1515 -3.4334 5.8417 39 1 8.6695 -0.8718 3.9453 40 1 9.1647 -2.5342 3.5463 41 1 8.0708 -1.6462 2.4586 42 1 2.2491 -1.6317 -1.1525 43 1 3.6493 -1.1203 -3.3978 44 1 1.9778 -1.5509 -3.8325 45 1 3.4114 1.4703 -8.6842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075633237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -34.081450 kcal Electronic energy + Delta-G solvation = -25783.702877 eV Core-core repulsion = 21928.068080 eV Total energy + Delta-G solvation = -3855.634797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71315 -39.66703 -39.14749 -36.61527 -34.80606 -33.16968 -32.41275 -31.87182 -30.36122 -28.77636 -28.36599 -26.84001 -25.46876 -24.27747 -22.38297 -21.58887 -20.85833 -20.33852 -19.86506 -18.26874 -17.79930 -16.60966 -16.43599 -16.08592 -15.92850 -15.81645 -15.19538 -14.89285 -14.78780 -14.39363 -14.21580 -13.86219 -13.74855 -13.64015 -13.47677 -13.22120 -12.92003 -12.74427 -12.66272 -12.62151 -12.36259 -12.13563 -11.93442 -11.75765 -11.53305 -11.08549 -11.04966 -11.00330 -10.74493 -10.25850 -9.79813 -9.44658 -9.36940 -9.12966 -9.05514 -8.90745 -8.59034 -8.21635 -6.47811 -6.20017 -3.90209 1.13394 2.26483 2.37325 3.01435 3.04720 3.08902 3.11491 3.23514 3.29033 3.33425 3.72674 4.22088 4.36856 4.45638 4.49121 4.62084 4.68797 4.74292 4.89117 4.99520 5.04475 5.15086 5.16918 5.22917 5.29778 5.31805 5.34900 5.56167 5.61464 5.65653 5.68112 5.72292 5.81189 5.91136 6.00968 6.07110 6.15915 6.18285 6.36738 6.60403 6.66311 6.81568 7.16065 7.61274 7.71512 7.88977 8.36928 8.63347 9.25333 10.87398 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.002056 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.899636 B =13615.117699 C =15233.565330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.119 3.881 6 N -0.719 5.719 7 C 0.586 3.414 8 O -0.544 6.544 9 C -0.052 4.052 10 C -0.143 4.143 11 C -0.208 4.208 12 C 0.013 3.987 13 N -0.410 5.410 14 C 0.063 3.937 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.402 0.598 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.169 0.831 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -10.716 29.631 31.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.004 4.004 6 N -0.371 5.371 7 C 0.374 3.626 8 O -0.422 6.422 9 C -0.166 4.166 10 C -0.169 4.169 11 C -0.232 4.232 12 C -0.122 4.122 13 N -0.082 5.082 14 C -0.078 4.078 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.237 0.763 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.186 0.814 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.842 -7.980 28.639 29.865 hybrid contribution 0.610 -2.835 -0.402 2.927 sum 3.452 -10.814 28.237 30.434 Atomic orbital electron populations 1.22172 0.94968 1.02118 1.02849 1.20776 0.94191 0.97751 0.83166 0.89031 1.22112 0.94379 1.02183 0.98912 1.21447 0.93704 0.98171 0.87043 1.45620 1.06683 1.57416 1.27343 1.17005 0.82592 0.80152 0.82858 1.90830 1.55783 1.44688 1.50943 1.20070 0.84121 1.10452 1.01979 1.21331 0.98922 1.00870 0.95827 1.20828 0.91864 1.07397 1.03119 1.22058 1.00046 0.99698 0.90443 1.43896 1.05600 1.37546 1.21151 1.22332 0.86246 0.99883 0.99359 1.46133 1.69503 1.13875 1.09580 1.20292 0.76730 0.87217 0.83758 1.90699 1.48226 1.15720 1.84377 1.23538 1.03658 1.04854 0.98440 1.85385 1.86282 1.12910 0.98752 1.22867 1.50938 0.98141 0.96380 0.90960 1.24994 0.95134 0.95539 0.97967 1.70019 1.45600 1.13177 1.21480 0.86168 0.78816 0.79964 0.80551 1.20284 1.20757 1.19717 0.91848 0.91424 0.92516 0.90505 0.89615 0.90819 0.90748 0.76329 0.83911 0.83960 0.81402 0.90430 0.89913 0.87602 0.76925 0.89268 0.89276 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.15 0.35 -1.25 16 2 C 0.15 1.54 2.57 -67.93 -0.17 1.36 16 3 H 0.09 1.17 7.58 -51.92 -0.39 0.77 16 4 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 5 C 0.12 1.10 5.57 -4.04 -0.02 1.08 16 6 N -0.72 -5.98 5.54 -61.62 -0.34 -6.32 16 7 C 0.59 6.65 7.77 -12.86 -0.10 6.55 16 8 O -0.54 -8.11 14.67 5.19 0.08 -8.03 16 9 C -0.05 -0.52 6.88 -81.98 -0.56 -1.08 16 10 C -0.14 -1.10 10.36 -39.12 -0.41 -1.51 16 11 C -0.21 -1.47 10.81 -39.98 -0.43 -1.90 16 12 C 0.01 0.09 11.38 -16.92 -0.19 -0.10 16 13 N -0.41 -3.68 3.16 -120.24 -0.38 -4.06 16 14 C 0.06 0.47 10.63 59.85 0.64 1.11 16 15 N -0.74 -9.25 4.53 -53.80 -0.24 -9.50 16 16 C 0.53 9.77 7.81 -10.99 -0.09 9.69 16 17 O -0.52 -11.53 15.52 5.56 0.09 -11.45 16 18 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 35 H 0.40 2.12 7.38 -40.82 -0.30 1.82 16 36 H 0.14 0.71 7.45 -52.49 -0.39 0.32 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 1.03 6.23 -51.93 -0.32 0.71 16 42 H 0.40 3.92 8.60 -40.82 -0.35 3.57 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -38.04 396.02 -8.82 -46.86 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.78 Total: 2.52 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.70 Total: -3.10 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.23 Total: -45.51 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.16 Total: -19.48 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.04 -8.82 -46.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075633237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.777 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds