Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46893 * 2 1 4 4 C 1.53005 * 109.47214 * 119.99717 * 2 1 3 5 5 C 1.52994 * 109.46908 * 185.00283 * 4 2 1 6 6 N 1.46504 * 109.47209 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00428 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99962 * 5.13309 * 7 6 5 9 9 C 1.46676 * 120.00239 * 185.12611 * 7 6 5 10 10 C 1.37873 * 126.23099 * 354.29074 * 9 7 6 11 11 C 1.39831 * 107.08277 * 180.26080 * 10 9 7 12 12 C 1.35451 * 107.86681 * 0.02562 * 11 10 9 13 13 N 1.35523 * 108.87367 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.68207 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47323 * 240.00000 * 2 1 3 16 16 C 1.34775 * 120.00018 * 84.99555 * 15 2 1 17 17 O 1.21280 * 119.99975 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99878 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.46971 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99930 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00356 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00170 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99679 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00061 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47125 * 90.00047 * 24 22 20 26 26 H 1.48507 * 109.46769 * 209.99742 * 24 22 20 27 27 H 1.48496 * 109.47063 * 329.99785 * 24 22 20 28 28 H 1.09000 * 109.47957 * 299.99841 * 1 2 3 29 29 H 1.09007 * 109.47481 * 60.00302 * 1 2 3 30 30 H 1.09007 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46982 * 65.00263 * 4 2 1 32 32 H 1.09000 * 109.46914 * 305.00010 * 4 2 1 33 33 H 1.09005 * 109.47193 * 60.00474 * 5 4 2 34 34 H 1.08998 * 109.47442 * 300.00301 * 5 4 2 35 35 H 0.96996 * 119.99614 * 0.02562 * 6 5 4 36 36 H 1.08001 * 126.45873 * 0.24211 * 10 9 7 37 37 H 1.07999 * 126.06655 * 180.02562 * 11 10 9 38 38 H 1.08005 * 125.56167 * 179.97438 * 12 11 10 39 39 H 1.08994 * 109.47110 * 273.91676 * 14 13 12 40 40 H 1.08996 * 109.46962 * 33.91896 * 14 13 12 41 41 H 1.09000 * 109.46986 * 153.91421 * 14 13 12 42 42 H 0.97001 * 119.99682 * 264.99451 * 15 2 1 43 43 H 1.08997 * 109.47283 * 299.99940 * 18 16 15 44 44 H 1.08993 * 109.47070 * 60.00357 * 18 16 15 45 45 H 0.97004 * 119.99832 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6131 1.3137 6 7 4.0531 -1.3032 2.5102 7 6 5.3740 -1.3392 2.7755 8 8 6.1527 -0.7208 2.0738 9 6 5.8731 -2.1237 3.9099 10 6 5.1047 -2.7788 4.8486 11 6 5.9854 -3.3898 5.7465 12 6 7.2484 -3.1033 5.3498 13 7 7.1940 -2.3338 4.2355 14 6 8.3487 -1.8131 3.4993 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0183 -2.3571 17 8 1.8589 1.1585 -2.4115 18 6 2.6499 -0.7286 -3.5874 19 16 2.7113 0.4346 -4.9729 20 6 3.3143 -0.6307 -6.2402 21 1 3.5238 -1.6670 -6.0202 22 6 3.5212 -0.1376 -7.5211 23 7 3.2664 1.1256 -7.7891 24 14 4.1599 -1.2671 -8.8648 25 1 3.0140 -1.9032 -9.5629 26 1 4.9561 -0.4773 -9.8383 27 1 5.0174 -2.3186 -8.2614 28 1 -0.3635 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7714 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9994 -1.0726 0.4260 35 1 3.4258 -1.7347 3.1112 36 1 4.0258 -2.8132 4.8840 37 1 5.7079 -3.9847 6.6041 38 1 8.1515 -3.4334 5.8417 39 1 8.6695 -0.8718 3.9453 40 1 9.1647 -2.5342 3.5463 41 1 8.0708 -1.6462 2.4586 42 1 2.2491 -1.6317 -1.1525 43 1 3.6493 -1.1203 -3.3978 44 1 1.9778 -1.5509 -3.8325 45 1 3.4114 1.4703 -8.6842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075633237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -61.971236 kcal Electronic energy + Delta-G solvation = -25784.912269 eV Core-core repulsion = 21928.068080 eV Total energy + Delta-G solvation = -3856.844189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30891 -40.85032 -40.10873 -37.66227 -35.75220 -34.59772 -33.78757 -33.02546 -31.18227 -30.02389 -29.19896 -27.67020 -27.39965 -25.03680 -23.14305 -22.56619 -21.61033 -21.39660 -20.59380 -19.83403 -18.86487 -17.94408 -17.45925 -16.97747 -16.89076 -16.74559 -16.59990 -16.30076 -16.11544 -15.72115 -15.12632 -14.86303 -14.77692 -14.54080 -14.43020 -14.27964 -14.13416 -13.97267 -13.34035 -13.23235 -13.19924 -13.17949 -13.02753 -12.90160 -12.89396 -12.61163 -12.44429 -12.40889 -11.91302 -11.73155 -11.15448 -11.13256 -10.90655 -10.28866 -10.27805 -10.08405 -9.68893 -9.17363 -8.67639 -8.35811 -6.13801 0.46862 1.26248 1.41203 1.46047 1.56811 1.63585 1.66640 1.83519 2.25446 2.31771 2.34953 2.37014 2.98075 3.31515 3.69740 3.72928 3.92136 3.96832 4.02649 4.08562 4.19529 4.28384 4.33475 4.43632 4.47334 4.49368 4.50823 4.55203 4.62843 4.70569 4.83422 4.89525 5.02473 5.14235 5.18856 5.27672 5.33755 5.35898 5.40382 5.57022 5.82507 6.02965 6.18535 6.30493 6.50200 6.53247 7.05265 7.15250 7.27832 8.73430 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.002056 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.899636 B =13615.117699 C =15233.565330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.122 3.878 6 N -0.701 5.701 7 C 0.579 3.421 8 O -0.593 6.593 9 C -0.094 4.094 10 C -0.131 4.131 11 C -0.220 4.220 12 C 0.018 3.982 13 N -0.424 5.424 14 C 0.063 3.937 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.420 0.580 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.199 0.801 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.414 0.586 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -14.216 32.170 35.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.082 0.918 4 C -0.156 4.156 5 C -0.002 4.002 6 N -0.353 5.353 7 C 0.368 3.632 8 O -0.476 6.476 9 C -0.206 4.206 10 C -0.158 4.158 11 C -0.243 4.243 12 C -0.118 4.118 13 N -0.097 5.097 14 C -0.078 4.078 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.216 0.784 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.446 -11.541 31.247 33.400 hybrid contribution 0.715 -1.793 -0.986 2.167 sum 3.161 -13.334 30.261 33.219 Atomic orbital electron populations 1.22118 0.93766 1.03302 1.02316 1.20981 0.95048 0.96801 0.83441 0.91798 1.22006 0.92041 1.03769 0.97736 1.21327 0.95468 0.96624 0.86802 1.45421 1.06170 1.56655 1.27063 1.17411 0.83059 0.79780 0.82935 1.90803 1.57103 1.46925 1.52796 1.20108 0.85194 1.12501 1.02820 1.21749 1.00314 0.99114 0.94601 1.21228 0.91715 1.07629 1.03752 1.22708 1.01581 0.98108 0.89363 1.44126 1.05548 1.38105 1.21916 1.22315 0.86775 1.00977 0.97684 1.45914 1.67514 1.14522 1.08481 1.20001 0.76657 0.86572 0.84723 1.90687 1.50709 1.17701 1.85184 1.23388 1.05273 1.03276 0.96302 1.85558 1.86670 1.17424 1.02806 1.23199 1.50965 0.98418 0.96857 0.90019 1.26150 0.95102 0.97250 1.00788 1.70187 1.46840 1.15443 1.22255 0.84941 0.78451 0.77708 0.76797 1.19115 1.20272 1.18332 0.89299 0.95109 0.90387 0.87443 0.86693 0.93342 0.92679 0.74218 0.81294 0.81623 0.78414 0.90288 0.87120 0.90470 0.74856 0.87792 0.87138 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 71.98 0.68 -2.08 16 2 C 0.14 2.79 2.57 44.99 0.12 2.90 16 3 H 0.06 1.66 7.58 -2.38 -0.02 1.64 16 4 C -0.12 -1.25 4.87 30.59 0.15 -1.10 16 5 C 0.12 2.16 5.57 86.38 0.48 2.64 16 6 N -0.70 -10.75 5.54 -467.08 -2.59 -13.34 16 7 C 0.58 13.25 7.77 86.45 0.67 13.92 16 8 O -0.59 -18.84 14.67 -4.36 -0.06 -18.90 16 9 C -0.09 -1.77 6.88 40.35 0.28 -1.50 16 10 C -0.13 -1.68 10.36 22.57 0.23 -1.44 16 11 C -0.22 -2.42 10.81 22.01 0.24 -2.19 16 12 C 0.02 0.21 11.38 83.48 0.95 1.16 16 13 N -0.42 -7.24 3.16 -534.32 -1.69 -8.92 16 14 C 0.06 0.96 10.63 127.77 1.36 2.32 16 15 N -0.71 -17.11 4.53 -442.53 -2.00 -19.11 16 16 C 0.53 19.86 7.81 87.66 0.68 20.54 16 17 O -0.56 -26.42 15.52 -3.03 -0.05 -26.47 16 18 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 19 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 20 C -0.55 -31.86 9.50 67.95 0.65 -31.21 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 24 Si 1.00 44.39 29.55 68.60 2.03 46.42 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.05 1.20 7.75 -2.39 -0.02 1.18 16 35 H 0.42 3.19 7.38 -92.71 -0.68 2.50 16 36 H 0.17 1.04 7.45 -2.91 -0.02 1.02 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.64 6.23 -2.39 -0.01 1.63 16 42 H 0.41 7.19 8.60 -92.71 -0.80 6.40 16 43 H 0.10 3.90 8.14 -2.40 -0.02 3.88 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -89.55 396.02 1.68 -87.86 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.47 Total: 18.60 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 7.39 Total: 0.23 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -6.00 Total: -97.96 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.11 Total: -45.37 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -89.55 1.68 -87.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075633237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.892 kcal (2) G-P(sol) polarization free energy of solvation -89.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds