Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47087 * 2 1 4 4 C 1.53001 * 109.46840 * 119.99942 * 2 1 3 5 5 C 1.53003 * 109.47104 * 185.00190 * 4 2 1 6 6 N 1.46495 * 109.47201 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99862 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99685 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.46808 * 180.02562 * 9 7 6 11 11 C 1.76191 * 99.99937 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00531 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00200 * 179.97438 * 11 10 9 14 14 N 1.31635 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00226 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47374 * 89.99834 * 15 13 11 17 17 H 1.48502 * 109.47034 * 210.00150 * 15 13 11 18 18 H 1.48502 * 109.46780 * 329.99783 * 15 13 11 19 19 N 1.46504 * 109.47360 * 239.99565 * 2 1 3 20 20 C 1.34774 * 119.99448 * 84.99915 * 19 2 1 21 21 O 1.21689 * 120.00590 * 5.18340 * 20 19 2 22 22 C 1.46681 * 119.99660 * 185.18009 * 20 19 2 23 23 C 1.37875 * 126.23123 * 5.67648 * 22 20 19 24 24 C 1.39837 * 107.08413 * 180.23703 * 23 22 20 25 25 C 1.35462 * 107.86263 * 359.76215 * 24 23 22 26 26 N 1.35532 * 108.87452 * 359.97438 * 25 24 23 27 27 C 1.46493 * 125.67854 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47426 * 300.00039 * 1 2 3 30 30 H 1.09002 * 109.46934 * 60.00753 * 1 2 3 31 31 H 1.09003 * 109.46886 * 304.99618 * 4 2 1 32 32 H 1.08993 * 109.47618 * 65.00044 * 4 2 1 33 33 H 1.08997 * 109.46923 * 299.99899 * 5 4 2 34 34 H 1.09003 * 109.46853 * 59.99603 * 5 4 2 35 35 H 0.97002 * 120.00370 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.47136 * 299.99782 * 9 7 6 37 37 H 1.08995 * 109.46992 * 59.99990 * 9 7 6 38 38 H 0.96993 * 119.99645 * 179.97438 * 14 13 11 39 39 H 0.96998 * 120.00079 * 265.00193 * 19 2 1 40 40 H 1.07997 * 126.45853 * 359.97438 * 23 22 20 41 41 H 1.07998 * 126.07227 * 179.74146 * 24 23 22 42 42 H 1.08002 * 125.55926 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.47158 * 86.02249 * 27 26 25 44 44 H 1.08997 * 109.47241 * 326.01941 * 27 26 25 45 45 H 1.09008 * 109.46795 * 206.01872 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3740 -1.3394 2.7755 8 8 6.1584 -0.8002 2.0239 9 6 5.8763 -2.0498 4.0061 10 16 7.6801 -1.9219 4.0825 11 6 7.9872 -2.8118 5.5718 12 1 7.1635 -3.2347 6.1279 13 6 9.2876 -2.9695 6.0305 14 7 10.2917 -2.4547 5.3526 15 14 9.6132 -3.9136 7.6092 16 1 9.8143 -5.3508 7.2941 17 1 10.8319 -3.3755 8.2654 18 1 8.4523 -3.7650 8.5232 19 7 2.0184 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3571 21 8 1.9485 1.1818 -2.3905 22 6 2.5267 -0.7332 -3.5804 23 6 2.6747 -2.0975 -3.7143 24 6 3.0478 -2.3420 -5.0396 25 6 3.1144 -1.1498 -5.6793 26 7 2.7963 -0.1646 -4.8046 27 6 2.7536 1.2676 -5.1095 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6053 -0.2616 2.1370 32 1 1.7517 -1.7715 1.2057 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.4257 -1.7343 3.1116 36 1 5.4419 -1.5900 4.8938 37 1 5.5876 -3.0999 3.9626 38 1 11.2004 -2.5646 5.6734 39 1 2.2491 -1.6318 -1.1525 40 1 2.5336 -2.8374 -2.9404 41 1 3.2477 -3.3096 -5.4758 42 1 3.3773 -1.0077 -6.7171 43 1 1.7749 1.5237 -5.5153 44 1 3.5245 1.5063 -5.8422 45 1 2.9296 1.8386 -4.1977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -34.359552 kcal Electronic energy + Delta-G solvation = -25835.618921 eV Core-core repulsion = 21979.972065 eV Total energy + Delta-G solvation = -3855.646857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65942 -39.72982 -39.05772 -36.77865 -34.50667 -33.27278 -32.42645 -32.01397 -30.22138 -29.16039 -28.13546 -26.78494 -25.49265 -24.02097 -22.92150 -21.40714 -20.71627 -20.33292 -19.88934 -18.19819 -17.80721 -16.77053 -16.31000 -16.09977 -15.82932 -15.78507 -15.33426 -14.86442 -14.80134 -14.40442 -14.02933 -13.96013 -13.79650 -13.70324 -13.56023 -13.20019 -12.95142 -12.69235 -12.59105 -12.56030 -12.39191 -12.26606 -12.16510 -11.65133 -11.53611 -11.27183 -11.06199 -11.02283 -10.75920 -10.23896 -9.81618 -9.50758 -9.37109 -9.06930 -9.04565 -8.89040 -8.51951 -8.23098 -6.49814 -6.21404 -3.92010 1.18596 2.31358 2.45314 3.02427 3.04931 3.10557 3.12751 3.22393 3.27862 3.31835 3.68880 4.20560 4.36883 4.48639 4.52699 4.58657 4.69166 4.73812 4.90619 5.05383 5.08107 5.08437 5.11961 5.13664 5.22381 5.29771 5.30723 5.37296 5.57857 5.63134 5.73457 5.75950 5.83509 5.88565 5.89942 5.93919 6.13613 6.15903 6.44513 6.59897 6.67914 6.88749 7.18699 7.59640 7.69941 7.90282 8.35350 8.61829 9.23794 10.86025 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.001901 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.307051 B =14727.119752 C =15675.175839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.095 0.905 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.714 5.714 20 C 0.593 3.407 21 O -0.550 6.550 22 C -0.055 4.055 23 C -0.139 4.139 24 C -0.207 4.207 25 C 0.014 3.986 26 N -0.410 5.410 27 C 0.064 3.936 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.404 0.596 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.169 0.831 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.940 2.205 -18.427 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.113 0.887 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 N -0.366 5.366 20 C 0.382 3.618 21 O -0.429 6.429 22 C -0.169 4.169 23 C -0.166 4.166 24 C -0.231 4.231 25 C -0.121 4.121 26 N -0.083 5.083 27 C -0.077 4.077 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.239 0.761 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.605 4.423 -19.769 29.617 hybrid contribution -0.850 -1.970 2.059 2.974 sum -22.455 2.453 -17.710 28.703 Atomic orbital electron populations 1.22175 0.94677 1.02403 1.02788 1.20916 0.94115 0.97894 0.82781 0.88661 1.22128 0.95507 1.02008 0.98123 1.21261 0.92573 0.98050 0.88506 1.45995 1.07822 1.58668 1.27022 1.20326 0.81490 0.79735 0.86820 1.90713 1.54949 1.44318 1.49048 1.23529 1.06854 1.02535 0.97456 1.85423 0.92195 1.72644 1.33164 1.22865 0.95460 1.40118 1.09916 0.90925 1.25003 0.95062 0.95661 0.97921 1.70021 0.99371 1.42553 1.38328 0.86163 0.77960 0.79623 0.81716 1.20266 1.20761 1.19703 1.45738 1.67528 1.14325 1.08977 1.16960 0.76411 0.86075 0.82373 1.90773 1.51930 1.14185 1.86046 1.20038 1.16767 0.92683 0.87408 1.21364 1.04402 0.92911 0.97878 1.20851 1.09933 0.97647 0.94654 1.22055 1.06443 0.87413 0.96234 1.43856 1.49280 1.07353 1.07823 1.22302 1.03084 0.77793 1.04505 0.92204 0.91242 0.92030 0.89279 0.90417 0.91562 0.91550 0.76850 0.89234 0.89227 0.92182 0.76094 0.83874 0.83908 0.81407 0.90630 0.89978 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.48 37.16 0.35 -0.71 16 2 C 0.15 1.14 2.62 -67.93 -0.18 0.97 16 3 H 0.10 0.92 7.51 -51.93 -0.39 0.53 16 4 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 5 C 0.12 1.33 5.56 -4.04 -0.02 1.31 16 6 N -0.74 -9.38 5.56 -60.29 -0.33 -9.72 16 7 C 0.53 9.84 7.85 -10.98 -0.09 9.76 16 8 O -0.52 -11.89 15.86 5.56 0.09 -11.81 16 9 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 15 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.71 -6.00 4.50 -55.11 -0.25 -6.25 16 20 C 0.59 6.58 7.73 -12.85 -0.10 6.48 16 21 O -0.55 -7.46 14.28 5.20 0.07 -7.39 16 22 C -0.06 -0.58 6.88 -81.98 -0.56 -1.15 16 23 C -0.14 -1.25 10.35 -39.12 -0.40 -1.66 16 24 C -0.21 -1.73 10.81 -39.97 -0.43 -2.16 16 25 C 0.01 0.11 11.38 -16.91 -0.19 -0.08 16 26 N -0.41 -3.90 3.16 -120.23 -0.38 -4.28 16 27 C 0.06 0.48 10.65 59.84 0.64 1.12 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 36 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 39 H 0.40 2.68 7.56 -40.82 -0.31 2.37 16 40 H 0.14 0.96 7.49 -52.49 -0.39 0.57 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.99 6.20 -51.92 -0.32 0.67 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -37.90 396.00 -8.81 -46.72 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.78 Total: 2.77 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.70 Total: -3.01 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.23 Total: -45.75 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.90 -8.81 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.359 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds