Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47087 * 2 1 4 4 C 1.53001 * 109.46840 * 119.99942 * 2 1 3 5 5 C 1.53003 * 109.47104 * 185.00190 * 4 2 1 6 6 N 1.46495 * 109.47201 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99862 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99685 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.46808 * 180.02562 * 9 7 6 11 11 C 1.76191 * 99.99937 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00531 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00200 * 179.97438 * 11 10 9 14 14 N 1.31635 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00226 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47374 * 89.99834 * 15 13 11 17 17 H 1.48502 * 109.47034 * 210.00150 * 15 13 11 18 18 H 1.48502 * 109.46780 * 329.99783 * 15 13 11 19 19 N 1.46504 * 109.47360 * 239.99565 * 2 1 3 20 20 C 1.34774 * 119.99448 * 84.99915 * 19 2 1 21 21 O 1.21689 * 120.00590 * 5.18340 * 20 19 2 22 22 C 1.46681 * 119.99660 * 185.18009 * 20 19 2 23 23 C 1.37875 * 126.23123 * 5.67648 * 22 20 19 24 24 C 1.39837 * 107.08413 * 180.23703 * 23 22 20 25 25 C 1.35462 * 107.86263 * 359.76215 * 24 23 22 26 26 N 1.35532 * 108.87452 * 359.97438 * 25 24 23 27 27 C 1.46493 * 125.67854 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47426 * 300.00039 * 1 2 3 30 30 H 1.09002 * 109.46934 * 60.00753 * 1 2 3 31 31 H 1.09003 * 109.46886 * 304.99618 * 4 2 1 32 32 H 1.08993 * 109.47618 * 65.00044 * 4 2 1 33 33 H 1.08997 * 109.46923 * 299.99899 * 5 4 2 34 34 H 1.09003 * 109.46853 * 59.99603 * 5 4 2 35 35 H 0.97002 * 120.00370 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.47136 * 299.99782 * 9 7 6 37 37 H 1.08995 * 109.46992 * 59.99990 * 9 7 6 38 38 H 0.96993 * 119.99645 * 179.97438 * 14 13 11 39 39 H 0.96998 * 120.00079 * 265.00193 * 19 2 1 40 40 H 1.07997 * 126.45853 * 359.97438 * 23 22 20 41 41 H 1.07998 * 126.07227 * 179.74146 * 24 23 22 42 42 H 1.08002 * 125.55926 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.47158 * 86.02249 * 27 26 25 44 44 H 1.08997 * 109.47241 * 326.01941 * 27 26 25 45 45 H 1.09008 * 109.46795 * 206.01872 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3740 -1.3394 2.7755 8 8 6.1584 -0.8002 2.0239 9 6 5.8763 -2.0498 4.0061 10 16 7.6801 -1.9219 4.0825 11 6 7.9872 -2.8118 5.5718 12 1 7.1635 -3.2347 6.1279 13 6 9.2876 -2.9695 6.0305 14 7 10.2917 -2.4547 5.3526 15 14 9.6132 -3.9136 7.6092 16 1 9.8143 -5.3508 7.2941 17 1 10.8319 -3.3755 8.2654 18 1 8.4523 -3.7650 8.5232 19 7 2.0184 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3571 21 8 1.9485 1.1818 -2.3905 22 6 2.5267 -0.7332 -3.5804 23 6 2.6747 -2.0975 -3.7143 24 6 3.0478 -2.3420 -5.0396 25 6 3.1144 -1.1498 -5.6793 26 7 2.7963 -0.1646 -4.8046 27 6 2.7536 1.2676 -5.1095 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6053 -0.2616 2.1370 32 1 1.7517 -1.7715 1.2057 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.4257 -1.7343 3.1116 36 1 5.4419 -1.5900 4.8938 37 1 5.5876 -3.0999 3.9626 38 1 11.2004 -2.5646 5.6734 39 1 2.2491 -1.6318 -1.1525 40 1 2.5336 -2.8374 -2.9404 41 1 3.2477 -3.3096 -5.4758 42 1 3.3773 -1.0077 -6.7171 43 1 1.7749 1.5237 -5.5153 44 1 3.5245 1.5063 -5.8422 45 1 2.9296 1.8386 -4.1977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -61.747287 kcal Electronic energy + Delta-G solvation = -25836.806543 eV Core-core repulsion = 21979.972065 eV Total energy + Delta-G solvation = -3856.834478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32109 -40.72887 -40.23813 -37.65146 -35.64353 -34.57676 -33.95348 -32.83115 -31.44786 -29.87381 -29.18270 -27.64651 -27.39300 -24.82040 -23.73673 -22.17428 -21.69439 -21.27683 -20.64581 -19.82410 -18.83809 -17.77984 -17.51929 -17.24060 -16.87159 -16.68698 -16.67169 -16.39883 -15.83706 -15.54151 -15.31083 -14.92814 -14.74424 -14.51229 -14.45884 -14.35339 -14.15076 -13.63373 -13.54559 -13.27891 -13.18964 -13.15819 -13.00381 -12.88509 -12.87571 -12.64498 -12.42631 -12.39902 -11.93931 -11.71692 -11.13575 -11.07282 -10.96365 -10.26532 -10.24458 -10.08812 -9.69368 -9.18085 -8.66522 -8.33933 -6.12247 0.46959 1.27867 1.43387 1.48162 1.58385 1.62007 1.68728 1.82177 2.26026 2.30044 2.36706 2.39958 3.00219 3.32734 3.67736 3.77967 3.86588 3.96454 4.04200 4.09408 4.18308 4.32136 4.35078 4.42984 4.46548 4.47687 4.52635 4.54082 4.62371 4.69335 4.81949 4.88835 5.01947 5.11792 5.16227 5.26542 5.31035 5.42508 5.43539 5.49294 5.81048 6.01897 6.20633 6.30079 6.49182 6.53639 7.07286 7.15261 7.27031 8.75321 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.001901 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.307051 B =14727.119752 C =15675.175839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.120 3.880 6 N -0.709 5.709 7 C 0.530 3.470 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.544 4.544 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.257 1.257 19 N -0.704 5.704 20 C 0.586 3.414 21 O -0.586 6.586 22 C -0.093 4.093 23 C -0.139 4.139 24 C -0.223 4.223 25 C 0.019 3.981 26 N -0.422 5.422 27 C 0.064 3.936 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.420 0.580 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.200 0.800 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.191 0.170 -17.561 30.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.279 4.279 10 S 0.069 5.931 11 C -0.692 4.692 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.181 1.181 19 N -0.356 5.356 20 C 0.375 3.625 21 O -0.469 6.469 22 C -0.205 4.205 23 C -0.165 4.165 24 C -0.247 4.247 25 C -0.117 4.117 26 N -0.095 5.095 27 C -0.077 4.077 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.179 0.821 41 H 0.180 0.820 42 H 0.217 0.783 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.933 2.352 -18.874 30.570 hybrid contribution -0.249 -1.319 1.680 2.150 sum -24.182 1.033 -17.194 29.689 Atomic orbital electron populations 1.22101 0.93199 1.03369 1.02535 1.20948 0.95134 0.96788 0.82902 0.91167 1.22048 0.91726 1.03854 0.98310 1.21359 0.95592 0.96389 0.87070 1.45681 1.05997 1.57240 1.27447 1.20141 0.83017 0.79285 0.85935 1.90705 1.56794 1.46774 1.50583 1.23367 1.00798 1.04511 0.99226 1.85647 0.99973 1.73350 1.34106 1.23204 0.96203 1.39954 1.09825 0.89723 1.26165 0.94722 0.96580 1.01903 1.70194 0.99923 1.44239 1.40540 0.84933 0.78172 0.78017 0.76725 1.19251 1.20459 1.18064 1.45720 1.66713 1.14681 1.08510 1.17227 0.76129 0.85808 0.83294 1.90745 1.53815 1.15631 1.86663 1.20201 1.18987 0.93505 0.87838 1.21713 1.03335 0.92644 0.98844 1.21216 1.10182 0.98751 0.94530 1.22675 1.04721 0.86974 0.97350 1.44117 1.49360 1.08159 1.07897 1.22340 1.04489 0.76948 1.03899 0.90543 0.89662 0.94145 0.87042 0.87621 0.92806 0.93649 0.74250 0.87071 0.86869 0.92042 0.74973 0.82097 0.82039 0.78292 0.89799 0.87437 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.48 71.98 0.68 -1.07 16 2 C 0.15 2.13 2.62 44.99 0.12 2.25 16 3 H 0.07 1.41 7.51 -2.39 -0.02 1.39 16 4 C -0.12 -1.29 4.87 30.60 0.15 -1.14 16 5 C 0.12 2.51 5.56 86.38 0.48 2.99 16 6 N -0.71 -16.36 5.56 -463.06 -2.57 -18.93 16 7 C 0.53 19.28 7.85 87.66 0.69 19.97 16 8 O -0.57 -26.93 15.86 -3.03 -0.05 -26.97 16 9 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 10 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 11 C -0.54 -30.92 9.50 67.95 0.65 -30.27 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.62 5.49 84.86 0.47 1.08 16 14 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 15 Si 1.00 43.40 29.55 68.60 2.03 45.42 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 N -0.70 -11.61 4.50 -446.49 -2.01 -13.62 16 20 C 0.59 13.55 7.73 86.45 0.67 14.21 16 21 O -0.59 -17.03 14.28 -4.31 -0.06 -17.10 16 22 C -0.09 -1.98 6.88 40.35 0.28 -1.70 16 23 C -0.14 -2.40 10.35 22.57 0.23 -2.16 16 24 C -0.22 -3.42 10.81 22.01 0.24 -3.18 16 25 C 0.02 0.27 11.38 83.48 0.95 1.22 16 26 N -0.42 -7.96 3.16 -534.31 -1.69 -9.65 16 27 C 0.06 0.98 10.65 127.77 1.36 2.34 16 28 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.30 7.75 -2.39 -0.02 1.28 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 6.15 8.47 -92.71 -0.79 5.36 16 36 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.41 5.01 7.56 -92.71 -0.70 4.31 16 40 H 0.16 1.95 7.49 -2.91 -0.02 1.93 16 41 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 1.66 6.20 -2.38 -0.01 1.64 16 Total: -1.00 -87.43 396.00 1.69 -85.74 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.47 Total: 21.06 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 7.40 Total: 0.03 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -5.99 Total: -98.22 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.11 Total: -44.07 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -87.43 1.69 -85.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.989 kcal (2) G-P(sol) polarization free energy of solvation -87.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds