Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 N 1.46501 * 109.46843 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99967 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99932 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47103 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99850 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00370 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47236 * 89.99243 * 15 13 11 17 17 H 1.48500 * 109.47317 * 209.99987 * 15 13 11 18 18 H 1.48501 * 109.46830 * 329.99639 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.34844 * 125.88789 * 274.68947 * 23 22 20 25 25 C 1.40901 * 107.41189 * 179.88432 * 24 23 22 26 26 C 1.34844 * 107.41595 * 0.38306 * 25 24 23 27 27 N 1.36339 * 108.22144 * 359.76448 * 26 25 24 28 28 H 0.97000 * 125.63766 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 0.96997 * 120.00090 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47320 * 300.00084 * 9 7 6 38 38 H 1.08998 * 109.47063 * 60.00511 * 9 7 6 39 39 H 0.97002 * 119.99692 * 180.02562 * 14 13 11 40 40 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 42 42 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 43 43 H 1.07999 * 126.29836 * 0.02562 * 24 23 22 44 44 H 1.07994 * 126.28778 * 180.12528 * 25 24 23 45 45 H 1.08002 * 125.89015 * 179.73305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8005 2.0236 9 6 5.8764 -2.0500 4.0057 10 16 7.6803 -1.9223 4.0820 11 6 7.9874 -2.8122 5.5714 12 1 7.1637 -3.2357 6.1271 13 6 9.2878 -2.9699 6.0300 14 7 9.5173 -3.6352 7.1424 15 14 10.7125 -2.2382 5.0686 16 1 10.9753 -0.8572 5.5473 17 1 11.9253 -3.0712 5.2700 18 1 10.3694 -2.2045 3.6242 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 6 2.6842 0.2358 -4.7453 24 6 1.6542 0.5455 -5.5586 25 6 2.1252 1.4860 -6.4961 26 6 3.4272 1.7086 -6.2252 27 7 3.7761 0.9441 -5.1515 28 1 4.6556 0.9100 -4.7438 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.4259 -1.7350 3.1110 37 1 5.4421 -1.5902 4.8935 38 1 5.5877 -3.1002 3.9622 39 1 10.4262 -3.7451 7.4630 40 1 2.2490 -1.6318 -1.1527 41 1 3.6381 -1.1236 -3.4054 42 1 1.9643 -1.5536 -3.8314 43 1 0.6518 0.1477 -5.5005 44 1 1.5502 1.9413 -7.2888 45 1 4.0811 2.3769 -6.7658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -42.172998 kcal Electronic energy + Delta-G solvation = -25539.399784 eV Core-core repulsion = 21683.414111 eV Total energy + Delta-G solvation = -3855.985673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42317 -40.04077 -39.28240 -36.89922 -34.55884 -32.77696 -32.47262 -31.42071 -31.12929 -30.16862 -28.26861 -26.83364 -25.65307 -23.69346 -21.97583 -21.02745 -20.77851 -20.47991 -20.29748 -18.02092 -17.81097 -17.48129 -16.63889 -16.31757 -16.08361 -15.58862 -15.39609 -14.99449 -14.55469 -14.35378 -14.07295 -13.89899 -13.81657 -13.73221 -13.54039 -13.43448 -13.09816 -12.83025 -12.70614 -12.48122 -12.40808 -12.31995 -11.94507 -11.73800 -11.65068 -11.34073 -11.29169 -11.04030 -10.64312 -10.18251 -9.89453 -9.61743 -9.45254 -9.07327 -9.05038 -9.01570 -8.54323 -8.27222 -6.95979 -6.32302 -4.04421 1.94321 2.32774 2.69140 2.71283 2.91128 2.95994 3.14586 3.25152 3.30815 3.47142 3.59748 4.29269 4.30076 4.37210 4.44176 4.61753 4.67684 4.68967 4.73339 4.98040 5.01131 5.02415 5.06066 5.06786 5.20454 5.28014 5.30118 5.33257 5.48785 5.52081 5.66138 5.72910 5.76855 5.84273 5.96168 6.00209 6.08053 6.13456 6.44018 6.75706 6.89766 7.11620 7.35365 7.53154 7.90707 7.90769 8.37999 8.42356 9.13827 10.76867 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.001866 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.332146 B =14999.838263 C =16481.372997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.122 3.878 6 N -0.738 5.738 7 C 0.530 3.470 8 O -0.520 6.520 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 N -0.728 5.728 20 C 0.513 3.487 21 O -0.524 6.524 22 C -0.073 4.073 23 C 0.030 3.970 24 C -0.181 4.181 25 C -0.202 4.202 26 C -0.010 4.010 27 N -0.552 5.552 28 H 0.413 0.587 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.401 0.599 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 4.674 -21.885 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.316 3.684 8 O -0.394 6.394 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 N -0.382 5.382 20 C 0.299 3.701 21 O -0.399 6.399 22 C -0.114 4.114 23 C -0.083 4.083 24 C -0.206 4.206 25 C -0.227 4.227 26 C -0.142 4.142 27 N -0.147 5.147 28 H 0.249 0.751 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.235 0.765 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.811 6.377 -22.985 30.378 hybrid contribution 0.002 -1.106 1.286 1.696 sum -18.809 5.271 -21.699 29.196 Atomic orbital electron populations 1.22161 0.94750 1.02277 1.02872 1.20869 0.94204 0.97684 0.83108 0.89034 1.22132 0.95266 1.02039 0.98370 1.21263 0.92783 0.97940 0.88271 1.45968 1.07723 1.58470 1.27124 1.20301 0.81642 0.79720 0.86767 1.90703 1.55022 1.44544 1.49147 1.23280 1.03081 1.03250 0.97887 1.84799 0.98090 1.73884 1.34843 1.22312 0.97298 1.39531 1.07828 0.89374 1.24714 0.98301 0.93873 0.94413 1.69939 1.21736 1.39386 1.20550 0.86733 0.82164 0.79917 0.83023 1.19193 1.19915 1.15968 1.46126 1.68221 1.14205 1.09611 1.20571 0.77733 0.87533 0.84282 1.90753 1.48652 1.15777 1.84747 1.20134 1.04171 0.97171 0.89938 1.19458 0.88272 1.01135 0.99411 1.20600 0.98104 1.03196 0.98682 1.20863 0.94745 1.03819 1.03273 1.21802 0.97585 1.01205 0.93587 1.41910 1.11429 1.35043 1.26298 0.75114 0.92317 0.91431 0.91840 0.89369 0.90429 0.91647 0.91576 0.76632 0.88473 0.88445 0.91919 0.76474 0.88178 0.86726 0.85100 0.84858 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.48 37.16 0.35 -0.66 16 2 C 0.15 1.01 2.57 -67.93 -0.17 0.84 16 3 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 4 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 5 C 0.12 1.18 5.56 -4.04 -0.02 1.15 16 6 N -0.74 -8.39 5.56 -60.30 -0.33 -8.72 16 7 C 0.53 8.97 7.85 -10.99 -0.09 8.89 16 8 O -0.52 -10.94 15.86 5.56 0.09 -10.85 16 9 C -0.12 -2.32 6.16 36.00 0.22 -2.09 16 10 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 11 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 12 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 15 Si 0.86 21.58 27.74 -169.99 -4.71 16.87 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 19 N -0.73 -4.68 4.53 -53.81 -0.24 -4.92 16 20 C 0.51 4.53 7.78 -10.98 -0.09 4.44 16 21 O -0.52 -6.96 15.70 5.55 0.09 -6.88 16 22 C -0.07 -0.47 6.24 -29.03 -0.18 -0.65 16 23 C 0.03 0.28 5.66 -81.79 -0.46 -0.19 16 24 C -0.18 -1.80 10.77 -39.78 -0.43 -2.23 16 25 C -0.20 -1.92 10.86 -39.78 -0.43 -2.35 16 26 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 27 N -0.55 -4.62 6.07 -9.12 -0.06 -4.68 16 28 H 0.41 2.56 8.96 -40.82 -0.37 2.20 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.67 7.75 -51.94 -0.40 0.27 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.31 8.47 -40.82 -0.35 2.96 16 37 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.40 1.62 8.60 -40.82 -0.35 1.27 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -38.35 397.50 -8.75 -47.10 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.93 Total: 3.09 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.41 Total: -5.95 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.14 Total: -43.82 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.18 Total: -17.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.35 -8.75 -47.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.923 kcal (2) G-P(sol) polarization free energy of solvation -38.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds