Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 N 1.46501 * 109.46843 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99967 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99932 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47103 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99850 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00370 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47236 * 89.99243 * 15 13 11 17 17 H 1.48500 * 109.47317 * 209.99987 * 15 13 11 18 18 H 1.48501 * 109.46830 * 329.99639 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.34844 * 125.88789 * 274.68947 * 23 22 20 25 25 C 1.40901 * 107.41189 * 179.88432 * 24 23 22 26 26 C 1.34844 * 107.41595 * 0.38306 * 25 24 23 27 27 N 1.36339 * 108.22144 * 359.76448 * 26 25 24 28 28 H 0.97000 * 125.63766 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 0.96997 * 120.00090 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47320 * 300.00084 * 9 7 6 38 38 H 1.08998 * 109.47063 * 60.00511 * 9 7 6 39 39 H 0.97002 * 119.99692 * 180.02562 * 14 13 11 40 40 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 42 42 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 43 43 H 1.07999 * 126.29836 * 0.02562 * 24 23 22 44 44 H 1.07994 * 126.28778 * 180.12528 * 25 24 23 45 45 H 1.08002 * 125.89015 * 179.73305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8005 2.0236 9 6 5.8764 -2.0500 4.0057 10 16 7.6803 -1.9223 4.0820 11 6 7.9874 -2.8122 5.5714 12 1 7.1637 -3.2357 6.1271 13 6 9.2878 -2.9699 6.0300 14 7 9.5173 -3.6352 7.1424 15 14 10.7125 -2.2382 5.0686 16 1 10.9753 -0.8572 5.5473 17 1 11.9253 -3.0712 5.2700 18 1 10.3694 -2.2045 3.6242 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 6 2.6842 0.2358 -4.7453 24 6 1.6542 0.5455 -5.5586 25 6 2.1252 1.4860 -6.4961 26 6 3.4272 1.7086 -6.2252 27 7 3.7761 0.9441 -5.1515 28 1 4.6556 0.9100 -4.7438 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.4259 -1.7350 3.1110 37 1 5.4421 -1.5902 4.8935 38 1 5.5877 -3.1002 3.9622 39 1 10.4262 -3.7451 7.4630 40 1 2.2490 -1.6318 -1.1527 41 1 3.6381 -1.1236 -3.4054 42 1 1.9643 -1.5536 -3.8314 43 1 0.6518 0.1477 -5.5005 44 1 1.5502 1.9413 -7.2888 45 1 4.0811 2.3769 -6.7658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075678320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -71.100257 kcal Electronic energy + Delta-G solvation = -25540.654164 eV Core-core repulsion = 21683.414111 eV Total energy + Delta-G solvation = -3857.240053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05442 -40.83912 -40.43549 -37.66776 -35.58373 -34.67204 -33.45035 -32.20478 -31.78638 -31.20728 -29.22743 -27.84401 -27.43656 -24.47204 -22.61718 -21.87611 -21.49532 -21.41990 -20.97182 -19.89333 -18.53750 -18.15138 -17.79381 -17.35681 -17.10002 -17.01556 -16.61898 -16.18619 -15.68878 -15.27974 -15.14109 -14.97771 -14.82192 -14.61312 -14.48089 -14.34027 -14.17726 -13.74700 -13.63135 -13.34815 -13.29458 -13.12095 -13.02566 -12.95571 -12.71816 -12.52094 -12.41084 -12.35062 -11.92209 -11.85441 -11.17553 -11.02519 -10.91082 -10.53304 -10.19513 -10.03472 -9.72511 -8.99736 -8.92388 -8.51783 -6.22465 0.99361 1.30111 1.30979 1.46336 1.55781 1.56665 1.67807 2.04737 2.21775 2.26050 2.36366 2.57711 2.71915 2.86580 3.70521 3.76883 3.78537 3.99917 4.05411 4.15600 4.23824 4.25074 4.43985 4.45346 4.48415 4.49971 4.56519 4.62609 4.66317 4.82910 4.86309 4.90530 5.04676 5.14584 5.32649 5.35009 5.41154 5.41904 5.57205 5.70550 6.09597 6.11404 6.23916 6.48316 6.58355 6.79314 6.93643 7.20755 7.31536 8.60431 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.001866 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.332146 B =14999.838263 C =16481.372997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.063 0.937 4 C -0.123 4.123 5 C 0.121 3.879 6 N -0.709 5.709 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.111 4.111 10 S -0.180 6.180 11 C -0.528 4.528 12 H 0.064 0.936 13 C 0.046 3.954 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.259 1.259 18 H -0.237 1.237 19 N -0.716 5.716 20 C 0.511 3.489 21 O -0.576 6.576 22 C -0.069 4.069 23 C 0.019 3.981 24 C -0.208 4.208 25 C -0.228 4.228 26 C -0.016 4.016 27 N -0.553 5.553 28 H 0.421 0.579 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.419 0.581 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.277 0.723 40 H 0.416 0.584 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.142 0.858 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.161 3.869 -22.403 31.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.161 4.161 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.445 6.445 9 C -0.262 4.262 10 S 0.047 5.953 11 C -0.676 4.676 12 H 0.082 0.918 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.184 1.184 18 H -0.160 1.160 19 N -0.369 5.369 20 C 0.298 3.702 21 O -0.455 6.455 22 C -0.109 4.109 23 C -0.094 4.094 24 C -0.233 4.233 25 C -0.252 4.252 26 C -0.147 4.147 27 N -0.149 5.149 28 H 0.259 0.741 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.257 0.743 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.140 0.860 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.160 0.840 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -19.831 5.516 -23.472 31.219 hybrid contribution 0.122 -0.850 1.450 1.685 sum -19.709 4.666 -22.022 29.920 Atomic orbital electron populations 1.22090 0.93829 1.03216 1.02235 1.20820 0.94809 0.96553 0.83684 0.91857 1.22038 0.91995 1.03775 0.98271 1.21382 0.95376 0.96400 0.87130 1.45700 1.05975 1.57081 1.27604 1.19984 0.83133 0.79307 0.85725 1.90696 1.56623 1.46738 1.50423 1.23277 0.97997 1.05127 0.99800 1.84745 1.04494 1.73328 1.32767 1.22462 0.96795 1.39381 1.08947 0.91825 1.25552 1.00807 0.94312 0.95302 1.70016 1.22710 1.40705 1.21980 0.85878 0.79586 0.79389 0.81584 1.18871 1.18374 1.16043 1.46048 1.67163 1.14827 1.08888 1.20989 0.76911 0.86972 0.85325 1.90735 1.51132 1.18074 1.85590 1.20233 1.05938 0.96891 0.87828 1.19875 0.88228 1.01429 0.99871 1.20866 0.98755 1.04092 0.99613 1.21168 0.95639 1.04449 1.03965 1.22264 0.97747 1.01155 0.93557 1.42029 1.11829 1.34768 1.26259 0.74091 0.90493 0.90435 0.94188 0.87827 0.87616 0.91907 0.93644 0.74294 0.86851 0.86497 0.91395 0.74684 0.86042 0.84056 0.84825 0.84021 0.79527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 71.98 0.68 -0.93 16 2 C 0.15 1.75 2.57 44.99 0.12 1.86 16 3 H 0.06 1.16 7.58 -2.39 -0.02 1.14 16 4 C -0.12 -1.00 4.87 30.60 0.15 -0.85 16 5 C 0.12 2.03 5.56 86.38 0.48 2.51 16 6 N -0.71 -13.85 5.56 -463.07 -2.57 -16.42 16 7 C 0.53 16.94 7.85 87.66 0.69 17.63 16 8 O -0.57 -23.27 15.86 -3.04 -0.05 -23.31 16 9 C -0.11 -3.92 6.16 71.23 0.44 -3.48 16 10 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 11 C -0.53 -30.16 10.04 67.95 0.68 -29.48 16 12 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 13 C 0.05 2.65 5.50 84.86 0.47 3.11 16 14 N -0.92 -55.06 13.97 21.65 0.30 -54.76 16 15 Si 0.91 44.45 27.74 68.60 1.90 46.35 16 16 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 19 N -0.72 -7.74 4.53 -442.53 -2.00 -9.75 16 20 C 0.51 8.55 7.78 87.66 0.68 9.23 16 21 O -0.58 -15.60 15.70 -3.04 -0.05 -15.64 16 22 C -0.07 -0.77 6.24 29.10 0.18 -0.59 16 23 C 0.02 0.34 5.66 41.08 0.23 0.58 16 24 C -0.21 -4.19 10.77 22.14 0.24 -3.95 16 25 C -0.23 -4.37 10.86 22.14 0.24 -4.13 16 26 C -0.02 -0.26 11.94 83.21 0.99 0.74 16 27 N -0.55 -8.97 6.07 -182.78 -1.11 -10.08 16 28 H 0.42 4.92 8.96 -92.71 -0.83 4.09 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 1.14 7.75 -2.39 -0.02 1.12 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.42 5.09 8.47 -92.71 -0.79 4.31 16 37 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.12 3.69 8.14 -2.40 -0.02 3.68 16 39 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.42 2.00 8.60 -92.71 -0.80 1.21 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -85.96 397.50 0.22 -85.74 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -1.43 Total: 15.53 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 6.27 Total: -7.74 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -5.39 Total: -91.01 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.10 Total: -38.96 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -85.96 0.22 -85.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -85.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds