Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47561 * 2 1 4 4 C 1.53006 * 109.47069 * 119.99846 * 2 1 3 5 5 C 1.52998 * 109.47294 * 185.00140 * 4 2 1 6 6 N 1.46496 * 109.46846 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99613 * 179.97438 * 6 5 4 8 8 O 1.21632 * 120.00315 * 0.02562 * 7 6 5 9 9 C 1.47266 * 119.99985 * 180.02562 * 7 6 5 10 10 C 1.46691 * 126.94133 * 0.02562 * 9 7 6 11 11 C 1.34485 * 106.33247 * 180.02562 * 10 9 7 12 12 N 1.36449 * 108.85710 * 0.02562 * 11 10 9 13 13 C 1.46498 * 124.85296 * 179.97438 * 12 11 10 14 14 C 1.34659 * 110.29935 * 359.72551 * 12 11 10 15 15 N 1.46495 * 109.47088 * 239.99741 * 2 1 3 16 16 C 1.34780 * 120.00254 * 85.00511 * 15 2 1 17 17 O 1.21278 * 119.99567 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00190 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.47288 * 179.97438 * 18 16 15 20 20 C 1.76191 * 100.00020 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00567 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99911 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00006 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47392 * 59.99592 * 24 22 20 26 26 H 1.48500 * 109.47126 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46904 * 299.99520 * 24 22 20 28 28 H 1.08988 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47114 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.47010 * 59.99678 * 1 2 3 31 31 H 1.08995 * 109.46769 * 64.99252 * 4 2 1 32 32 H 1.09004 * 109.46888 * 305.00162 * 4 2 1 33 33 H 1.09002 * 109.47106 * 59.99809 * 5 4 2 34 34 H 1.08999 * 109.46731 * 299.99697 * 5 4 2 35 35 H 0.96996 * 120.00516 * 0.02562 * 6 5 4 36 36 H 1.07996 * 126.83281 * 359.97438 * 10 9 7 37 37 H 1.07993 * 125.57140 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47267 * 90.01896 * 13 12 11 39 39 H 1.08997 * 109.47091 * 210.02469 * 13 12 11 40 40 H 1.08998 * 109.46811 * 330.02601 * 13 12 11 41 41 H 1.07998 * 125.80689 * 180.28355 * 14 12 11 42 42 H 0.97008 * 120.00000 * 264.99686 * 15 2 1 43 43 H 1.09003 * 109.47569 * 299.99826 * 18 16 15 44 44 H 1.08999 * 109.47074 * 59.99628 * 18 16 15 45 45 H 0.97000 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3739 -1.3395 2.7756 8 8 6.1606 -0.7987 2.0218 9 6 5.8647 -2.0336 3.9781 10 6 5.0574 -2.7324 4.9839 11 6 5.9215 -3.2109 5.8966 12 7 7.1885 -2.8610 5.5303 13 6 8.4008 -3.2031 6.2782 14 6 7.1658 -2.1608 4.3803 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8583 1.1583 -2.4117 18 6 2.6500 -0.7287 -3.5874 19 16 2.7102 0.4341 -4.9732 20 6 3.3148 -0.6308 -6.2400 21 1 3.5248 -1.6671 -6.0199 22 6 3.5213 -0.1379 -7.5210 23 7 3.2650 1.1250 -7.7896 24 14 4.1617 -1.2670 -8.8643 25 1 3.2112 -2.3909 -9.0612 26 1 4.2942 -0.5037 -10.1312 27 1 5.4883 -1.8043 -8.4685 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7515 -1.7714 1.2057 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4370 1.3574 34 1 3.9994 -1.0729 0.4261 35 1 3.4257 -1.7349 3.1113 36 1 3.9829 -2.8403 4.9907 37 1 5.6560 -3.7792 6.7757 38 1 8.7871 -4.1596 5.9262 39 1 9.1527 -2.4290 6.1252 40 1 8.1645 -3.2754 7.3398 41 1 8.0281 -1.7650 3.8644 42 1 2.2491 -1.6319 -1.1525 43 1 3.6493 -1.1205 -3.3978 44 1 1.9778 -1.5510 -3.8324 45 1 3.4089 1.4694 -8.6849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076147173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -34.220132 kcal Electronic energy + Delta-G solvation = -25445.519163 eV Core-core repulsion = 21589.878352 eV Total energy + Delta-G solvation = -3855.640811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58837 -39.59042 -39.06524 -36.48884 -34.49105 -33.23466 -32.37497 -31.71440 -29.75185 -29.23795 -28.40901 -27.01731 -25.42956 -24.05852 -22.28919 -21.48914 -20.54013 -20.26891 -19.82167 -18.30737 -17.75660 -16.51824 -16.25691 -16.00200 -15.90272 -15.71955 -15.23167 -14.83680 -14.75324 -14.55285 -14.16953 -13.77401 -13.67768 -13.50807 -13.48572 -13.15453 -13.00086 -12.80566 -12.73380 -12.58091 -12.42378 -12.06547 -11.86884 -11.63034 -11.42780 -11.01862 -10.99350 -10.97758 -10.71811 -10.02311 -9.76853 -9.31067 -9.24634 -9.01337 -8.99994 -8.83568 -8.69665 -8.17727 -6.43626 -6.16221 -3.86200 1.49722 2.02867 2.36479 3.09717 3.17358 3.18058 3.27702 3.31462 3.35868 3.42230 3.78310 4.20799 4.25837 4.47460 4.56502 4.57274 4.58840 4.70796 4.83867 4.85096 4.95749 5.05703 5.18695 5.22835 5.31928 5.39003 5.43452 5.49838 5.62439 5.65625 5.71884 5.74332 5.90674 5.96473 6.07829 6.21084 6.23370 6.29833 6.36108 6.60779 6.73228 6.78296 7.44354 7.64640 7.78261 8.22428 8.40452 8.69512 9.28920 10.91150 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.001899 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.245956 B =14738.272451 C =16328.321330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.118 3.882 6 N -0.727 5.727 7 C 0.588 3.412 8 O -0.548 6.548 9 C -0.235 4.235 10 C -0.170 4.170 11 C -0.018 4.018 12 N -0.448 5.448 13 C 0.068 3.932 14 C 0.075 3.925 15 N -0.735 5.735 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.175 0.825 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -11.911 33.126 35.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.005 4.005 6 N -0.379 5.379 7 C 0.377 3.623 8 O -0.427 6.427 9 C -0.244 4.244 10 C -0.194 4.194 11 C -0.144 4.144 12 N -0.124 5.124 13 C -0.074 4.074 14 C -0.060 4.060 15 N -0.390 5.390 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.232 0.768 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.193 0.807 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.330 -9.481 32.552 34.068 hybrid contribution 0.536 -2.867 -0.414 2.946 sum 3.866 -12.347 32.139 34.645 Atomic orbital electron populations 1.22169 0.95087 1.02049 1.02776 1.20779 0.94081 0.97775 0.83268 0.89074 1.22101 0.94739 1.01974 0.98695 1.21381 0.93390 0.98024 0.87709 1.45752 1.07384 1.57627 1.27121 1.17390 0.81942 0.78953 0.84042 1.90821 1.55524 1.46602 1.49732 1.20360 0.93481 1.11053 0.99556 1.22022 0.98681 1.03188 0.95537 1.21754 0.82756 1.07182 1.02750 1.43645 1.07206 1.42028 1.19489 1.22143 0.85632 1.02575 0.97020 1.21840 0.98624 0.97516 0.88019 1.46124 1.69436 1.13876 1.09562 1.20282 0.76729 0.87211 0.83768 1.90695 1.48279 1.15735 1.84401 1.23539 1.03696 1.04825 0.98432 1.85370 1.86191 1.13010 0.98723 1.22836 1.50969 0.98158 0.96414 0.91005 1.24987 0.95127 0.95527 0.97932 1.70011 1.45542 1.13221 1.21546 0.86232 0.79334 0.80017 0.79964 1.19981 1.20837 1.19940 0.92569 0.91903 0.91476 0.90675 0.89795 0.91172 0.90949 0.76756 0.83719 0.81621 0.90531 0.89465 0.89530 0.80740 0.76917 0.89220 0.89306 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.15 1.64 2.57 -67.93 -0.17 1.47 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 C -0.14 -1.06 4.87 -26.73 -0.13 -1.19 16 5 C 0.12 1.24 5.56 -4.05 -0.02 1.21 16 6 N -0.73 -6.91 5.55 -61.44 -0.34 -7.25 16 7 C 0.59 7.36 7.81 -12.59 -0.10 7.26 16 8 O -0.55 -9.24 16.91 5.25 0.09 -9.15 16 9 C -0.23 -2.35 6.29 -103.35 -0.65 -3.00 16 10 C -0.17 -1.22 10.56 -37.50 -0.40 -1.61 16 11 C -0.02 -0.10 11.34 -16.82 -0.19 -0.30 16 12 N -0.45 -2.74 3.09 -124.53 -0.38 -3.12 16 13 C 0.07 0.15 11.03 59.85 0.66 0.81 16 14 C 0.08 0.66 11.12 -16.84 -0.19 0.47 16 15 N -0.74 -9.77 4.53 -53.81 -0.24 -10.01 16 16 C 0.53 10.10 7.81 -10.99 -0.09 10.01 16 17 O -0.52 -11.83 15.52 5.56 0.09 -11.74 16 18 C -0.15 -3.20 6.16 36.00 0.22 -2.98 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.60 9.50 30.94 0.29 -15.31 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 24 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.06 0.51 8.14 -51.94 -0.42 0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 35 H 0.40 2.55 7.60 -40.82 -0.31 2.24 16 36 H 0.15 0.69 7.69 -52.49 -0.40 0.28 16 37 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.09 0.12 8.13 -51.93 -0.42 -0.30 16 40 H 0.09 0.05 8.13 -51.93 -0.42 -0.37 16 41 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.40 4.22 8.60 -40.82 -0.35 3.87 16 43 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -39.65 400.86 -8.66 -48.31 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.90 Total: 2.31 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.50 Total: -2.45 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.24 Total: -46.29 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.18 Total: -20.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.65 -8.66 -48.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076147173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.092 kcal (2) G-P(sol) polarization free energy of solvation -39.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds