Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47561 * 2 1 4 4 C 1.53006 * 109.47069 * 119.99846 * 2 1 3 5 5 C 1.52998 * 109.47294 * 185.00140 * 4 2 1 6 6 N 1.46496 * 109.46846 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99613 * 179.97438 * 6 5 4 8 8 O 1.21632 * 120.00315 * 0.02562 * 7 6 5 9 9 C 1.47266 * 119.99985 * 180.02562 * 7 6 5 10 10 C 1.46691 * 126.94133 * 0.02562 * 9 7 6 11 11 C 1.34485 * 106.33247 * 180.02562 * 10 9 7 12 12 N 1.36449 * 108.85710 * 0.02562 * 11 10 9 13 13 C 1.46498 * 124.85296 * 179.97438 * 12 11 10 14 14 C 1.34659 * 110.29935 * 359.72551 * 12 11 10 15 15 N 1.46495 * 109.47088 * 239.99741 * 2 1 3 16 16 C 1.34780 * 120.00254 * 85.00511 * 15 2 1 17 17 O 1.21278 * 119.99567 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00190 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.47288 * 179.97438 * 18 16 15 20 20 C 1.76191 * 100.00020 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00567 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99911 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00006 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47392 * 59.99592 * 24 22 20 26 26 H 1.48500 * 109.47126 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46904 * 299.99520 * 24 22 20 28 28 H 1.08988 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47114 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.47010 * 59.99678 * 1 2 3 31 31 H 1.08995 * 109.46769 * 64.99252 * 4 2 1 32 32 H 1.09004 * 109.46888 * 305.00162 * 4 2 1 33 33 H 1.09002 * 109.47106 * 59.99809 * 5 4 2 34 34 H 1.08999 * 109.46731 * 299.99697 * 5 4 2 35 35 H 0.96996 * 120.00516 * 0.02562 * 6 5 4 36 36 H 1.07996 * 126.83281 * 359.97438 * 10 9 7 37 37 H 1.07993 * 125.57140 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47267 * 90.01896 * 13 12 11 39 39 H 1.08997 * 109.47091 * 210.02469 * 13 12 11 40 40 H 1.08998 * 109.46811 * 330.02601 * 13 12 11 41 41 H 1.07998 * 125.80689 * 180.28355 * 14 12 11 42 42 H 0.97008 * 120.00000 * 264.99686 * 15 2 1 43 43 H 1.09003 * 109.47569 * 299.99826 * 18 16 15 44 44 H 1.08999 * 109.47074 * 59.99628 * 18 16 15 45 45 H 0.97000 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3739 -1.3395 2.7756 8 8 6.1606 -0.7987 2.0218 9 6 5.8647 -2.0336 3.9781 10 6 5.0574 -2.7324 4.9839 11 6 5.9215 -3.2109 5.8966 12 7 7.1885 -2.8610 5.5303 13 6 8.4008 -3.2031 6.2782 14 6 7.1658 -2.1608 4.3803 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8583 1.1583 -2.4117 18 6 2.6500 -0.7287 -3.5874 19 16 2.7102 0.4341 -4.9732 20 6 3.3148 -0.6308 -6.2400 21 1 3.5248 -1.6671 -6.0199 22 6 3.5213 -0.1379 -7.5210 23 7 3.2650 1.1250 -7.7896 24 14 4.1617 -1.2670 -8.8643 25 1 3.2112 -2.3909 -9.0612 26 1 4.2942 -0.5037 -10.1312 27 1 5.4883 -1.8043 -8.4685 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7515 -1.7714 1.2057 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4370 1.3574 34 1 3.9994 -1.0729 0.4261 35 1 3.4257 -1.7349 3.1113 36 1 3.9829 -2.8403 4.9907 37 1 5.6560 -3.7792 6.7757 38 1 8.7871 -4.1596 5.9262 39 1 9.1527 -2.4290 6.1252 40 1 8.1645 -3.2754 7.3398 41 1 8.0281 -1.7650 3.8644 42 1 2.2491 -1.6319 -1.1525 43 1 3.6493 -1.1205 -3.3978 44 1 1.9778 -1.5510 -3.8324 45 1 3.4089 1.4694 -8.6849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076147173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -63.613088 kcal Electronic energy + Delta-G solvation = -25446.793737 eV Core-core repulsion = 21589.878352 eV Total energy + Delta-G solvation = -3856.915385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.11439 -40.84029 -40.12464 -37.61935 -35.55042 -34.58650 -33.72658 -32.93549 -30.60962 -30.05346 -29.62925 -27.65936 -27.43441 -24.83968 -23.07330 -22.52941 -21.59115 -21.03666 -20.58546 -19.82356 -18.86439 -17.92936 -17.40602 -16.88395 -16.80061 -16.65901 -16.51741 -16.30888 -16.10429 -15.76900 -15.11288 -14.85682 -14.76649 -14.52637 -14.41922 -14.30679 -13.94730 -13.87937 -13.30929 -13.27875 -13.17454 -13.06671 -12.99818 -12.96785 -12.86953 -12.61239 -12.40653 -12.36197 -11.89589 -11.73489 -11.13223 -11.02674 -10.89110 -10.28389 -10.19583 -10.05291 -9.49792 -9.27738 -8.66637 -8.34581 -6.12739 0.76503 1.26902 1.43382 1.46351 1.55509 1.56783 1.64754 1.91717 2.26662 2.33266 2.43532 2.59458 2.99093 3.32606 3.76716 3.84256 3.99351 4.01446 4.05010 4.09383 4.12476 4.29199 4.33989 4.45599 4.46569 4.50207 4.51777 4.61003 4.67401 4.75093 4.84411 4.91636 5.02515 5.04723 5.13956 5.20091 5.35645 5.41019 5.48278 5.58415 5.79447 6.08208 6.19329 6.36051 6.53910 6.69273 7.06193 7.28867 7.36584 8.74464 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.001899 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.245956 B =14738.272451 C =16328.321330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.063 0.937 4 C -0.116 4.116 5 C 0.120 3.880 6 N -0.709 5.709 7 C 0.580 3.420 8 O -0.607 6.607 9 C -0.267 4.267 10 C -0.179 4.179 11 C -0.011 4.011 12 N -0.444 5.444 13 C 0.060 3.940 14 C 0.060 3.940 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.264 1.264 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.030 0.970 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.417 0.583 36 H 0.168 0.832 37 H 0.203 0.797 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.170 0.830 42 H 0.414 0.586 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -15.459 35.946 39.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.361 5.361 7 C 0.371 3.629 8 O -0.490 6.490 9 C -0.277 4.277 10 C -0.202 4.202 11 C -0.138 4.138 12 N -0.118 5.118 13 C -0.080 4.080 14 C -0.078 4.078 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.202 1.202 27 H -0.188 1.188 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.186 0.814 37 H 0.219 0.781 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.187 0.813 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.777 -13.101 35.463 37.908 hybrid contribution 0.716 -1.802 -1.087 2.223 sum 3.493 -14.903 34.376 37.630 Atomic orbital electron populations 1.22111 0.93712 1.03281 1.02317 1.20987 0.95065 0.96772 0.83475 0.91864 1.21991 0.92160 1.03595 0.97662 1.21276 0.95378 0.96425 0.87388 1.45557 1.06907 1.56777 1.26833 1.17916 0.82333 0.78372 0.84326 1.90778 1.57049 1.49327 1.51857 1.20387 0.94830 1.12707 0.99775 1.22323 0.99997 1.03002 0.94864 1.22380 0.82173 1.06105 1.03155 1.43938 1.08692 1.40631 1.18556 1.22443 0.84471 1.03213 0.97893 1.21907 0.98339 0.98291 0.89251 1.45915 1.67484 1.14513 1.08492 1.20004 0.76664 0.86582 0.84724 1.90682 1.50729 1.17680 1.85195 1.23389 1.05259 1.03292 0.96310 1.85541 1.86590 1.17485 1.02746 1.23179 1.51089 0.98467 0.96906 0.90025 1.26145 0.95049 0.97249 1.00741 1.70182 1.46740 1.15491 1.22300 0.85000 0.79028 0.77771 0.76163 1.18502 1.20247 1.18838 0.90404 0.89302 0.95061 0.87620 0.86819 0.93738 0.93087 0.74554 0.81417 0.78066 0.89530 0.88935 0.87176 0.81256 0.74889 0.87841 0.87124 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.48 71.98 0.68 -2.24 16 2 C 0.14 3.00 2.57 44.99 0.12 3.12 16 3 H 0.06 1.74 7.58 -2.39 -0.02 1.73 16 4 C -0.12 -1.46 4.87 30.60 0.15 -1.31 16 5 C 0.12 2.44 5.56 86.38 0.48 2.92 16 6 N -0.71 -12.79 5.55 -466.53 -2.59 -15.38 16 7 C 0.58 14.88 7.81 86.62 0.68 15.56 16 8 O -0.61 -21.87 16.91 -4.13 -0.07 -21.94 16 9 C -0.27 -5.27 6.29 -19.04 -0.12 -5.39 16 10 C -0.18 -2.12 10.56 23.62 0.25 -1.87 16 11 C -0.01 -0.10 11.34 83.12 0.94 0.85 16 12 N -0.44 -4.57 3.09 -547.91 -1.69 -6.26 16 13 C 0.06 0.12 11.03 127.77 1.41 1.53 16 14 C 0.06 1.03 11.12 83.92 0.93 1.97 16 15 N -0.71 -18.19 4.53 -442.54 -2.00 -20.19 16 16 C 0.53 20.54 7.81 87.65 0.68 21.22 16 17 O -0.56 -27.05 15.52 -3.02 -0.05 -27.09 16 18 C -0.13 -5.48 6.16 71.23 0.44 -5.04 16 19 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 20 C -0.55 -32.40 9.50 67.96 0.65 -31.76 16 21 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -57.38 13.22 21.65 0.29 -57.09 16 24 Si 1.00 44.86 29.55 68.60 2.03 46.89 16 25 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.27 7.75 -2.39 -0.02 1.25 16 35 H 0.42 4.23 7.60 -92.71 -0.70 3.52 16 36 H 0.17 1.00 7.69 -2.91 -0.02 0.98 16 37 H 0.20 0.16 8.06 -2.91 -0.02 0.14 16 38 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.09 0.10 8.13 -2.39 -0.02 0.08 16 40 H 0.11 -0.27 8.13 -2.39 -0.02 -0.28 16 41 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.41 7.87 8.60 -92.70 -0.80 7.08 16 43 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 45 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -93.52 400.86 2.01 -91.51 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.49 Total: 18.64 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 7.75 Total: 0.78 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -6.00 Total: -98.92 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -0.12 Total: -49.03 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -93.52 2.01 -91.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076147173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.894 kcal (2) G-P(sol) polarization free energy of solvation -93.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds