Wall clock time and date at job start Sat Apr 11 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47446 * 2 1 4 4 C 1.53001 * 109.47149 * 120.00167 * 2 1 3 5 5 C 1.53006 * 109.47092 * 184.99642 * 4 2 1 6 6 N 1.46497 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99935 * 180.02562 * 6 5 4 8 8 O 1.21269 * 119.99905 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99578 * 179.97438 * 7 6 5 10 10 C 1.50704 * 109.46762 * 179.97438 * 9 7 6 11 11 C 1.34845 * 125.88833 * 85.00052 * 10 9 7 12 12 C 1.40883 * 107.41891 * 180.02562 * 11 10 9 13 13 C 1.34854 * 107.41814 * 0.02562 * 12 11 10 14 14 N 1.36343 * 108.21624 * 0.26031 * 13 12 11 15 15 H 0.96994 * 125.63652 * 179.73195 * 14 13 12 16 16 N 1.46503 * 109.47168 * 239.99999 * 2 1 3 17 17 C 1.34779 * 119.99576 * 84.99595 * 16 2 1 18 18 O 1.21282 * 120.00497 * 0.02562 * 17 16 2 19 19 C 1.50705 * 119.99533 * 180.02562 * 17 16 2 20 20 S 1.81004 * 109.47176 * 180.02562 * 19 17 16 21 21 C 1.76189 * 100.00196 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00368 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00158 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99616 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46930 * 90.00476 * 25 23 21 27 27 H 1.48506 * 109.46902 * 209.99868 * 25 23 21 28 28 H 1.48494 * 109.47313 * 330.00124 * 25 23 21 29 29 H 1.08997 * 109.47148 * 59.99739 * 1 2 3 30 30 H 1.08998 * 109.46944 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47178 * 299.99720 * 1 2 3 32 32 H 1.08998 * 109.47090 * 64.99856 * 4 2 1 33 33 H 1.08998 * 109.47171 * 305.00010 * 4 2 1 34 34 H 1.09005 * 109.46419 * 59.99783 * 5 4 2 35 35 H 1.09002 * 109.46995 * 299.99971 * 5 4 2 36 36 H 0.97004 * 119.99681 * 0.02562 * 6 5 4 37 37 H 1.09007 * 109.46806 * 60.00106 * 9 7 6 38 38 H 1.08998 * 109.47448 * 300.00182 * 9 7 6 39 39 H 1.08010 * 126.29114 * 0.04613 * 11 10 9 40 40 H 1.08008 * 126.29481 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.89007 * 179.97438 * 13 12 11 42 42 H 0.96994 * 120.00216 * 265.00794 * 16 2 1 43 43 H 1.09009 * 109.47022 * 300.00049 * 19 17 16 44 44 H 1.08991 * 109.47403 * 60.00325 * 19 17 16 45 45 H 0.96999 * 120.00151 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3035 2.5101 7 6 5.3741 -1.3388 2.7757 8 8 6.1583 -0.7997 2.0241 9 6 5.8763 -2.0482 4.0068 10 6 7.3782 -1.9420 4.0702 11 6 8.0766 -0.9128 4.5910 12 6 9.4449 -1.2161 4.4474 13 6 9.5306 -2.4190 3.8438 14 7 8.2652 -2.8667 3.6042 15 1 8.0343 -3.7056 3.1757 16 7 2.0184 -0.6906 -1.1962 17 6 2.1470 -0.0182 -2.3571 18 8 1.8589 1.1587 -2.4115 19 6 2.6488 -0.7288 -3.5878 20 16 2.7104 0.4345 -4.9732 21 6 3.3135 -0.6307 -6.2405 22 1 3.5229 -1.6672 -6.0206 23 6 3.5196 -0.1378 -7.5216 24 7 3.2649 1.1255 -7.7895 25 14 4.1596 -1.2670 -8.8650 26 1 3.0144 -1.9047 -9.5628 27 1 4.9546 -0.4765 -9.8389 28 1 5.0186 -2.3172 -8.2614 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8532 0.4369 1.3572 35 1 3.9995 -1.0729 0.4259 36 1 3.4259 -1.7350 3.1110 37 1 5.5881 -3.0986 3.9638 38 1 5.4414 -1.5882 4.8941 39 1 7.6631 -0.0201 5.0366 40 1 10.2732 -0.5984 4.7621 41 1 10.4440 -2.9361 3.5894 42 1 2.2489 -1.6317 -1.1527 43 1 3.6480 -1.1213 -3.3986 44 1 1.9760 -1.5505 -3.8326 45 1 3.4092 1.4701 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076769905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:58 Heat of formation + Delta-G solvation = -41.143163 kcal Electronic energy + Delta-G solvation = -25550.266362 eV Core-core repulsion = 21694.325346 eV Total energy + Delta-G solvation = -3855.941016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40638 -39.85120 -39.30906 -36.63670 -34.65359 -32.48306 -32.41347 -31.69871 -31.13171 -29.42082 -28.47525 -26.76189 -25.47104 -23.67318 -21.63109 -21.08690 -20.75046 -20.35386 -20.26449 -17.98425 -17.81903 -17.34258 -16.61732 -16.23504 -15.92647 -15.69544 -14.91880 -14.79376 -14.58919 -14.47162 -14.02782 -13.78765 -13.72373 -13.63931 -13.50712 -13.22432 -12.92071 -12.79600 -12.63260 -12.46927 -12.15801 -11.98691 -11.94427 -11.71338 -11.53322 -11.10070 -11.05267 -11.00764 -10.74847 -10.16197 -9.80213 -9.39463 -9.37750 -9.05838 -9.03660 -8.91698 -8.26370 -8.22074 -6.48191 -6.20256 -3.90516 1.93924 2.36086 2.71363 2.98145 3.03792 3.10406 3.14161 3.23218 3.28717 3.33009 3.71612 4.21751 4.30173 4.44142 4.53103 4.63144 4.72812 4.75208 4.96994 5.00431 5.14812 5.15884 5.21222 5.30038 5.30116 5.33993 5.50165 5.54708 5.60617 5.66812 5.74914 5.90057 5.99436 6.02039 6.09177 6.10141 6.14580 6.16653 6.64871 6.76403 6.90429 7.13834 7.35341 7.60838 7.70020 7.94749 8.36538 8.62229 9.25030 10.87205 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.002103 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.975512 B =13311.986451 C =15488.681430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.117 3.883 6 N -0.734 5.734 7 C 0.506 3.494 8 O -0.519 6.519 9 C -0.070 4.070 10 C 0.026 3.974 11 C -0.179 4.179 12 C -0.201 4.201 13 C -0.010 4.010 14 N -0.553 5.553 15 H 0.411 0.589 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.163 0.837 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -11.495 29.421 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.387 5.387 7 C 0.291 3.709 8 O -0.393 6.393 9 C -0.110 4.110 10 C -0.086 4.086 11 C -0.203 4.203 12 C -0.226 4.226 13 C -0.142 4.142 14 N -0.148 5.148 15 H 0.247 0.753 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.181 0.819 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.856 -9.085 28.560 30.028 hybrid contribution 0.450 -3.136 -0.758 3.258 sum 2.306 -12.221 27.802 30.457 Atomic orbital electron populations 1.22172 0.95011 1.02069 1.02851 1.20781 0.94153 0.97783 0.83228 0.89056 1.22101 0.94571 1.01979 0.98822 1.21413 0.93541 0.98120 0.87603 1.46014 1.07447 1.57841 1.27401 1.20614 0.82180 0.80858 0.87254 1.90802 1.55100 1.44338 1.49057 1.20106 0.90789 1.02251 0.97896 1.19462 0.90177 0.92945 1.06044 1.20630 0.93449 0.98840 1.07426 1.20886 0.96724 0.97441 1.07512 1.21809 0.87218 0.98292 1.06850 1.41865 1.06060 1.18821 1.48022 0.75298 1.46125 1.69535 1.13831 1.09590 1.20297 0.76719 0.87224 0.83763 1.90701 1.48188 1.15711 1.84381 1.23539 1.03640 1.04854 0.98453 1.85388 1.86265 1.12901 0.98737 1.22864 1.50998 0.98131 0.96361 0.90977 1.24994 0.95120 0.95539 0.97968 1.70015 1.45591 1.13171 1.21486 0.86168 0.78815 0.79964 0.80549 1.20289 1.20735 1.19720 0.91429 0.92563 0.91858 0.90690 0.89724 0.91069 0.90975 0.76729 0.88452 0.86759 0.85007 0.84767 0.81948 0.76982 0.89286 0.89300 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.15 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 5 C 0.12 1.04 5.56 -4.04 -0.02 1.02 16 6 N -0.73 -4.99 5.56 -60.29 -0.33 -5.33 16 7 C 0.51 4.81 7.82 -10.98 -0.09 4.72 16 8 O -0.52 -7.87 16.03 5.57 0.09 -7.79 16 9 C -0.07 -0.42 6.24 -29.03 -0.18 -0.60 16 10 C 0.03 0.24 5.66 -81.79 -0.46 -0.22 16 11 C -0.18 -1.86 10.76 -39.79 -0.43 -2.29 16 12 C -0.20 -2.00 10.86 -39.78 -0.43 -2.43 16 13 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 14 N -0.55 -4.50 6.08 -9.12 -0.06 -4.56 16 15 H 0.41 2.24 8.96 -40.82 -0.37 1.87 16 16 N -0.74 -9.25 4.53 -53.80 -0.24 -9.50 16 17 C 0.53 9.82 7.81 -10.98 -0.09 9.73 16 18 O -0.52 -11.58 15.53 5.56 0.09 -11.49 16 19 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 25 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 36 H 0.40 1.25 8.47 -40.82 -0.35 0.90 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.40 3.90 8.60 -40.82 -0.35 3.54 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -39.97 400.20 -9.26 -49.23 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.90 Total: 3.60 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.43 Total: -7.29 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.10 Total: -45.09 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.97 -9.26 -49.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076769905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.088 kcal (2) G-P(sol) polarization free energy of solvation -39.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds