Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46587 * 2 1 4 4 C 1.47194 * 109.47103 * 239.99971 * 2 1 3 5 5 N 2.60800 * 109.47145 * 239.99902 * 2 1 3 6 6 C 1.50702 * 109.47098 * 119.99457 * 2 1 3 7 7 O 1.21280 * 119.99612 * 120.00564 * 6 2 1 8 8 N 1.34769 * 119.99997 * 300.00147 * 6 2 1 9 9 C 1.46499 * 119.99903 * 179.97438 * 8 6 2 10 10 C 1.53003 * 109.47455 * 174.70606 * 9 8 6 11 11 H 1.09004 * 109.69571 * 312.95312 * 10 9 8 12 12 C 1.52756 * 109.50968 * 192.84049 * 10 9 8 13 13 C 1.53046 * 109.38112 * 185.70353 * 12 10 9 14 14 C 1.53035 * 109.53605 * 61.23933 * 13 12 10 15 15 C 1.53186 * 109.31165 * 298.63126 * 14 13 12 16 16 N 1.46916 * 109.58974 * 73.30660 * 10 9 8 17 17 C 1.34778 * 120.63084 * 353.42619 * 16 10 9 18 18 O 1.21288 * 120.00062 * 354.56293 * 17 16 10 19 19 C 1.50701 * 120.00517 * 174.56858 * 17 16 10 20 20 S 1.80993 * 109.47569 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00192 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99933 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99879 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99670 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47417 * 270.00048 * 25 23 21 27 27 H 1.48501 * 109.47007 * 149.99937 * 25 23 21 28 28 H 1.48504 * 109.47142 * 30.00619 * 25 23 21 29 29 H 1.08993 * 109.47206 * 300.00048 * 1 2 3 30 30 H 1.09004 * 109.46880 * 60.00406 * 1 2 3 31 31 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00287 * 0.02562 * 8 6 2 33 33 H 1.09005 * 109.47329 * 54.70275 * 9 8 6 34 34 H 1.09002 * 109.47170 * 294.70210 * 9 8 6 35 35 H 1.09004 * 109.56674 * 65.66777 * 12 10 9 36 36 H 1.09002 * 109.38876 * 305.62651 * 12 10 9 37 37 H 1.08995 * 109.45963 * 301.21284 * 13 12 10 38 38 H 1.09003 * 109.44523 * 181.25437 * 13 12 10 39 39 H 1.09004 * 109.49302 * 178.68584 * 14 13 12 40 40 H 1.08996 * 109.52884 * 58.60466 * 14 13 12 41 41 H 1.08998 * 109.59361 * 294.85078 * 15 14 13 42 42 H 1.09009 * 109.70401 * 174.49680 * 15 14 13 43 43 H 1.09009 * 109.46760 * 59.99502 * 19 17 16 44 44 H 1.09004 * 109.47003 * 300.00329 * 19 17 16 45 45 H 0.96995 * 120.00164 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0324 -0.7103 1.2305 7 8 2.7297 -1.6963 1.1193 8 7 1.7068 -0.2498 2.4545 9 6 2.1947 -0.9406 3.6508 10 6 1.7964 -0.1465 4.8965 11 1 2.0329 0.9076 4.7514 12 6 2.5628 -0.6774 6.1065 13 6 2.0599 0.0204 7.3724 14 6 0.5731 -0.2845 7.5684 15 6 -0.2168 0.2558 6.3723 16 7 0.3553 -0.2993 5.1381 17 6 -0.4261 -0.9414 4.2472 18 8 0.0383 -1.3130 3.1902 19 6 -1.8769 -1.1977 4.5643 20 16 -2.6518 -2.0708 3.1812 21 6 -4.2921 -2.2347 3.8032 22 1 -4.5419 -1.8417 4.7777 23 6 -5.2636 -2.8680 3.0404 24 7 -4.9595 -3.3456 1.8521 25 14 -7.0025 -3.0423 3.7002 26 1 -7.1199 -4.3151 4.4559 27 1 -7.9632 -3.0485 2.5678 28 1 -7.3068 -1.9017 4.6011 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.1488 0.5387 2.5435 33 1 3.2806 -1.0239 3.6048 34 1 1.7555 -1.9371 3.6994 35 1 3.6272 -0.4791 5.9802 36 1 2.4009 -1.7517 6.1946 37 1 2.2000 1.0967 7.2737 38 1 2.6215 -0.3415 8.2337 39 1 0.2212 0.1936 8.4826 40 1 0.4288 -1.3623 7.6428 41 1 -0.1480 1.3434 6.3499 42 1 -1.2619 -0.0424 6.4570 43 1 -2.3869 -0.2478 4.7254 44 1 -1.9498 -1.8065 5.4655 45 1 -4.0565 -3.2554 1.5096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081896337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = -26.669021 kcal Electronic energy + Delta-G solvation = -28065.467619 eV Core-core repulsion = 24210.154249 eV Total energy + Delta-G solvation = -3855.313370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87432 -39.48152 -37.38362 -36.48709 -34.88921 -33.39376 -33.06785 -32.58091 -31.54860 -29.21515 -26.87671 -25.21593 -24.87615 -24.54037 -22.48783 -21.36730 -20.60572 -19.31774 -18.36138 -17.91455 -17.25326 -16.53587 -16.32332 -15.81997 -15.30494 -15.14660 -14.76864 -14.58143 -14.22676 -14.15421 -13.90142 -13.82351 -13.56083 -13.33291 -13.03674 -12.92864 -12.70312 -12.48716 -12.46551 -12.38925 -12.14386 -12.06785 -11.88735 -11.71518 -11.48752 -11.38474 -11.28181 -10.99856 -10.95688 -10.91480 -10.23624 -9.73878 -9.61668 -9.14558 -9.05852 -8.83588 -8.43912 -8.27879 -6.72524 -6.66742 -4.05466 2.54665 2.66669 2.70819 2.82348 2.95309 3.26136 3.34406 3.36634 3.44639 3.51620 3.88999 4.18289 4.30020 4.47545 4.54944 4.69659 4.79636 4.83204 4.88308 4.91522 4.97261 4.98583 5.14030 5.17670 5.33812 5.35391 5.40810 5.51655 5.60627 5.63821 5.66130 5.67836 5.73152 5.74590 5.77195 5.92599 5.95769 6.09223 6.27965 6.47780 6.58124 7.33960 7.50446 7.67292 7.86694 8.34031 8.35545 8.45149 9.21405 10.77014 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.004568 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.591320 B = 6127.942323 C = 9254.621496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 H 0.132 0.868 4 C 0.228 3.772 5 N -0.423 5.423 6 C 0.530 3.470 7 O -0.542 6.542 8 N -0.682 5.682 9 C 0.133 3.867 10 C 0.138 3.862 11 H 0.076 0.924 12 C -0.129 4.129 13 C -0.116 4.116 14 C -0.138 4.138 15 C 0.109 3.891 16 N -0.618 5.618 17 C 0.523 3.477 18 O -0.492 6.492 19 C -0.130 4.130 20 S -0.112 6.112 21 C -0.609 4.609 22 H 0.064 0.936 23 C 0.037 3.963 24 N -0.883 5.883 25 Si 1.084 2.916 26 H -0.284 1.284 27 H -0.280 1.280 28 H -0.287 1.287 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.086 14.334 11.753 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 H 0.150 0.850 4 C -0.091 4.091 5 N -0.098 5.098 6 C 0.313 3.687 7 O -0.420 6.420 8 N -0.332 5.332 9 C 0.010 3.990 10 C 0.035 3.965 11 H 0.094 0.906 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.176 4.176 15 C -0.014 4.014 16 N -0.356 5.356 17 C 0.311 3.689 18 O -0.366 6.366 19 C -0.281 4.281 20 S 0.115 5.885 21 C -0.757 4.757 22 H 0.083 0.917 23 C -0.174 4.174 24 N -0.517 5.517 25 Si 0.911 3.089 26 H -0.211 1.211 27 H -0.205 1.205 28 H -0.213 1.213 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.232 0.768 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.355 11.660 8.320 19.584 hybrid contribution 0.263 1.633 2.456 2.961 sum 13.618 13.292 10.776 21.870 Atomic orbital electron populations 1.21746 0.88731 1.05395 1.03761 1.18858 0.99371 0.99434 0.85864 0.85019 1.28159 0.93362 0.93697 0.93869 1.81143 1.08385 1.07897 1.12352 1.19671 0.80406 0.84578 0.84021 1.90740 1.38753 1.25896 1.86570 1.45532 1.51942 1.31017 1.04732 1.21434 0.97633 0.98164 0.81807 1.21326 0.80665 0.99668 0.94872 0.90646 1.21831 0.99618 1.01409 0.93943 1.21483 0.95866 1.00555 0.97508 1.21939 0.95489 1.02236 0.97942 1.21727 0.98434 0.98014 0.83240 1.48160 1.07285 1.58376 1.21754 1.20354 0.87778 0.77222 0.83569 1.90871 1.73185 1.49106 1.23408 1.23381 0.94482 1.04544 1.05668 1.84763 1.09073 1.73598 1.21101 1.23710 0.95163 1.48419 1.08369 0.91731 1.26008 1.04659 0.92529 0.94179 1.70780 1.23255 1.41003 1.16688 0.83319 0.73646 0.76422 0.75539 1.21078 1.20508 1.21306 0.89904 0.90931 0.90228 0.76830 0.91677 0.89256 0.90450 0.90939 0.91728 0.91507 0.90691 0.91224 0.91396 0.89219 0.89356 0.89362 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.05 37.16 0.34 -1.26 16 2 C -0.01 -0.12 3.10 -94.56 -0.29 -0.41 16 3 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.23 3.42 13.88 -20.76 -0.29 3.13 16 5 N -0.42 -7.43 18.54 42.16 0.78 -6.65 16 6 C 0.53 7.53 6.86 -10.99 -0.08 7.45 16 7 O -0.54 -10.25 16.02 5.56 0.09 -10.16 16 8 N -0.68 -8.01 3.07 -60.29 -0.18 -8.19 16 9 C 0.13 1.56 4.31 -4.04 -0.02 1.54 16 10 C 0.14 1.20 2.89 -67.83 -0.20 1.01 16 11 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 12 C -0.13 -0.93 5.31 -26.83 -0.14 -1.08 16 13 C -0.12 -0.70 5.89 -26.69 -0.16 -0.86 16 14 C -0.14 -0.94 6.08 -26.62 -0.16 -1.11 16 15 C 0.11 0.89 6.35 -3.72 -0.02 0.86 16 16 N -0.62 -6.45 2.98 -165.48 -0.49 -6.94 16 17 C 0.52 7.77 7.33 -10.98 -0.08 7.69 16 18 O -0.49 -8.39 9.58 5.55 0.05 -8.34 16 19 C -0.13 -2.29 4.51 36.01 0.16 -2.13 16 20 S -0.11 -2.74 19.60 -107.50 -2.11 -4.85 16 21 C -0.61 -16.63 9.50 30.94 0.29 -16.34 16 22 H 0.06 1.70 7.80 -52.49 -0.41 1.29 16 23 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 24 N -0.88 -26.67 13.67 55.49 0.76 -25.91 16 25 Si 1.08 24.23 29.92 -169.99 -5.09 19.15 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 29 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 3.84 7.45 -40.82 -0.30 3.54 16 33 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.09 1.40 6.36 -51.93 -0.33 1.07 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.81 5.93 -51.92 -0.31 0.50 16 43 H 0.09 1.45 7.73 -51.91 -0.40 1.05 16 44 H 0.09 1.53 7.91 -51.91 -0.41 1.12 16 45 H 0.28 8.55 7.12 -40.82 -0.29 8.26 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -36.43 380.72 -7.90 -44.33 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.71 Total: 2.37 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.74 Total: -0.54 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.86 Total: -47.69 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.14 Total: -18.50 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.09 Total: 19.15 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.11 Total: -4.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.43 -7.90 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081896337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.658 kcal (2) G-P(sol) polarization free energy of solvation -36.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds