Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46587 * 2 1 4 4 C 1.47194 * 109.47103 * 239.99971 * 2 1 3 5 5 N 2.60800 * 109.47145 * 239.99902 * 2 1 3 6 6 C 1.50702 * 109.47098 * 119.99457 * 2 1 3 7 7 O 1.21280 * 119.99612 * 120.00564 * 6 2 1 8 8 N 1.34769 * 119.99997 * 300.00147 * 6 2 1 9 9 C 1.46499 * 119.99903 * 179.97438 * 8 6 2 10 10 C 1.53003 * 109.47455 * 174.70606 * 9 8 6 11 11 H 1.09004 * 109.69571 * 312.95312 * 10 9 8 12 12 C 1.52756 * 109.50968 * 192.84049 * 10 9 8 13 13 C 1.53046 * 109.38112 * 185.70353 * 12 10 9 14 14 C 1.53035 * 109.53605 * 61.23933 * 13 12 10 15 15 C 1.53186 * 109.31165 * 298.63126 * 14 13 12 16 16 N 1.46916 * 109.58974 * 73.30660 * 10 9 8 17 17 C 1.34778 * 120.63084 * 353.42619 * 16 10 9 18 18 O 1.21288 * 120.00062 * 354.56293 * 17 16 10 19 19 C 1.50701 * 120.00517 * 174.56858 * 17 16 10 20 20 S 1.80993 * 109.47569 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00192 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99933 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99879 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99670 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47417 * 270.00048 * 25 23 21 27 27 H 1.48501 * 109.47007 * 149.99937 * 25 23 21 28 28 H 1.48504 * 109.47142 * 30.00619 * 25 23 21 29 29 H 1.08993 * 109.47206 * 300.00048 * 1 2 3 30 30 H 1.09004 * 109.46880 * 60.00406 * 1 2 3 31 31 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00287 * 0.02562 * 8 6 2 33 33 H 1.09005 * 109.47329 * 54.70275 * 9 8 6 34 34 H 1.09002 * 109.47170 * 294.70210 * 9 8 6 35 35 H 1.09004 * 109.56674 * 65.66777 * 12 10 9 36 36 H 1.09002 * 109.38876 * 305.62651 * 12 10 9 37 37 H 1.08995 * 109.45963 * 301.21284 * 13 12 10 38 38 H 1.09003 * 109.44523 * 181.25437 * 13 12 10 39 39 H 1.09004 * 109.49302 * 178.68584 * 14 13 12 40 40 H 1.08996 * 109.52884 * 58.60466 * 14 13 12 41 41 H 1.08998 * 109.59361 * 294.85078 * 15 14 13 42 42 H 1.09009 * 109.70401 * 174.49680 * 15 14 13 43 43 H 1.09009 * 109.46760 * 59.99502 * 19 17 16 44 44 H 1.09004 * 109.47003 * 300.00329 * 19 17 16 45 45 H 0.96995 * 120.00164 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0324 -0.7103 1.2305 7 8 2.7297 -1.6963 1.1193 8 7 1.7068 -0.2498 2.4545 9 6 2.1947 -0.9406 3.6508 10 6 1.7964 -0.1465 4.8965 11 1 2.0329 0.9076 4.7514 12 6 2.5628 -0.6774 6.1065 13 6 2.0599 0.0204 7.3724 14 6 0.5731 -0.2845 7.5684 15 6 -0.2168 0.2558 6.3723 16 7 0.3553 -0.2993 5.1381 17 6 -0.4261 -0.9414 4.2472 18 8 0.0383 -1.3130 3.1902 19 6 -1.8769 -1.1977 4.5643 20 16 -2.6518 -2.0708 3.1812 21 6 -4.2921 -2.2347 3.8032 22 1 -4.5419 -1.8417 4.7777 23 6 -5.2636 -2.8680 3.0404 24 7 -4.9595 -3.3456 1.8521 25 14 -7.0025 -3.0423 3.7002 26 1 -7.1199 -4.3151 4.4559 27 1 -7.9632 -3.0485 2.5678 28 1 -7.3068 -1.9017 4.6011 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.1488 0.5387 2.5435 33 1 3.2806 -1.0239 3.6048 34 1 1.7555 -1.9371 3.6994 35 1 3.6272 -0.4791 5.9802 36 1 2.4009 -1.7517 6.1946 37 1 2.2000 1.0967 7.2737 38 1 2.6215 -0.3415 8.2337 39 1 0.2212 0.1936 8.4826 40 1 0.4288 -1.3623 7.6428 41 1 -0.1480 1.3434 6.3499 42 1 -1.2619 -0.0424 6.4570 43 1 -2.3869 -0.2478 4.7254 44 1 -1.9498 -1.8065 5.4655 45 1 -4.0565 -3.2554 1.5096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081896337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -51.463446 kcal Electronic energy + Delta-G solvation = -28066.542786 eV Core-core repulsion = 24210.154249 eV Total energy + Delta-G solvation = -3856.388537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87486 -40.59218 -38.31347 -37.71094 -35.95876 -34.71712 -34.44651 -33.90819 -32.37713 -30.48829 -27.78456 -27.01969 -26.13704 -25.34084 -23.31717 -22.26612 -21.57525 -20.60346 -19.91812 -19.10601 -18.30733 -17.57074 -17.34534 -16.92460 -16.48233 -16.30602 -16.02650 -15.71299 -15.37288 -15.28296 -15.07175 -14.94018 -14.65860 -14.34998 -14.32343 -14.17943 -13.91059 -13.80768 -13.72576 -13.59534 -13.27004 -13.21133 -13.11516 -12.78593 -12.74418 -12.43341 -12.14303 -11.94070 -11.89403 -11.59197 -11.52680 -11.44242 -11.08312 -10.89995 -10.26190 -10.23111 -9.87455 -9.40947 -8.88129 -8.77314 -6.21128 1.27716 1.40920 1.52851 1.56034 1.60780 1.64021 1.77718 1.78766 2.09697 2.36501 2.42744 2.82485 3.05839 3.14934 3.48703 3.75811 3.86889 3.89557 3.95253 4.02330 4.11967 4.16251 4.23051 4.24068 4.29955 4.43731 4.51991 4.65800 4.75623 4.76905 4.81179 4.86670 4.98303 5.04385 5.09089 5.22680 5.27395 5.28334 5.49734 5.56656 5.67420 5.68290 6.19097 6.33076 6.39109 6.61900 7.09536 7.22692 7.30644 8.55351 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.004568 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.591320 B = 6127.942323 C = 9254.621496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.001 4.001 3 H 0.194 0.806 4 C 0.244 3.756 5 N -0.476 5.476 6 C 0.522 3.478 7 O -0.599 6.599 8 N -0.665 5.665 9 C 0.134 3.866 10 C 0.145 3.855 11 H 0.112 0.888 12 C -0.127 4.127 13 C -0.111 4.111 14 C -0.135 4.135 15 C 0.102 3.898 16 N -0.604 5.604 17 C 0.524 3.476 18 O -0.522 6.522 19 C -0.107 4.107 20 S -0.179 6.179 21 C -0.613 4.613 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.916 5.916 25 Si 1.133 2.867 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.260 1.260 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.311 17.848 14.741 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.024 4.024 3 H 0.211 0.789 4 C -0.074 4.074 5 N -0.152 5.152 6 C 0.307 3.693 7 O -0.481 6.481 8 N -0.314 5.314 9 C 0.010 3.990 10 C 0.042 3.958 11 H 0.130 0.870 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.174 4.174 15 C -0.020 4.020 16 N -0.340 5.340 17 C 0.311 3.689 18 O -0.398 6.398 19 C -0.258 4.258 20 S 0.048 5.952 21 C -0.761 4.761 22 H 0.089 0.911 23 C -0.220 4.220 24 N -0.551 5.551 25 Si 0.952 3.048 26 H -0.198 1.198 27 H -0.207 1.207 28 H -0.185 1.185 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.052 0.948 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.593 15.236 11.383 23.377 hybrid contribution 0.286 0.579 1.679 1.799 sum 13.879 15.815 13.062 24.766 Atomic orbital electron populations 1.21696 0.88747 1.02906 1.05588 1.19118 0.98867 1.01608 0.82842 0.78949 1.28877 0.92040 0.92617 0.93893 1.81138 1.10205 1.09529 1.14341 1.20170 0.79725 0.84010 0.85381 1.90718 1.41541 1.28408 1.87411 1.45444 1.50970 1.30835 1.04129 1.21378 0.97677 0.96654 0.83248 1.21504 0.79252 1.01059 0.93946 0.87034 1.21855 1.00626 1.00208 0.93928 1.21479 0.94929 1.01611 0.96826 1.21934 0.96212 1.01080 0.98132 1.22009 0.97973 0.99675 0.82314 1.48103 1.07722 1.56639 1.21491 1.19904 0.86932 0.77992 0.84100 1.90889 1.73253 1.50689 1.24933 1.23271 0.96327 1.04119 1.02110 1.84942 1.09167 1.75496 1.25637 1.24061 0.96241 1.47384 1.08369 0.91140 1.27647 1.08908 0.91763 0.93701 1.70901 1.22390 1.43459 1.18387 0.82748 0.68819 0.77799 0.75457 1.19820 1.20651 1.18472 0.88545 0.88600 0.94817 0.75293 0.91026 0.93755 0.88489 0.93185 0.89620 0.90579 0.88617 0.93314 0.88321 0.90245 0.87609 0.89089 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.05 71.98 0.65 -2.30 16 2 C 0.00 -0.01 3.10 -13.34 -0.04 -0.05 16 3 H 0.19 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.24 7.38 13.88 89.44 1.24 8.62 16 5 N -0.48 -17.30 18.54 20.00 0.37 -16.93 16 6 C 0.52 14.79 6.86 87.66 0.60 15.39 16 7 O -0.60 -23.55 16.02 -3.03 -0.05 -23.60 16 8 N -0.66 -14.81 3.07 -463.06 -1.42 -16.23 16 9 C 0.13 3.05 4.31 86.38 0.37 3.42 16 10 C 0.14 2.09 2.89 44.83 0.13 2.22 16 11 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 12 C -0.13 -1.47 5.31 30.53 0.16 -1.31 16 13 C -0.11 -0.86 5.89 30.62 0.18 -0.68 16 14 C -0.14 -1.39 6.08 30.67 0.19 -1.20 16 15 C 0.10 1.29 6.35 86.36 0.55 1.84 16 16 N -0.60 -11.10 2.98 -795.84 -2.37 -13.47 16 17 C 0.52 15.18 7.33 87.66 0.64 15.82 16 18 O -0.52 -18.07 9.58 -3.05 -0.03 -18.10 16 19 C -0.11 -3.71 4.51 71.24 0.32 -3.39 16 20 S -0.18 -9.06 19.60 -56.49 -1.11 -10.17 16 21 C -0.61 -33.78 9.50 67.95 0.65 -33.14 16 22 H 0.07 3.67 7.80 -2.91 -0.02 3.65 16 23 C -0.02 -0.95 5.49 84.86 0.47 -0.48 16 24 N -0.92 -57.01 13.67 21.65 0.30 -56.72 16 25 Si 1.13 48.32 29.92 68.60 2.05 50.38 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 29 H 0.10 1.91 7.56 -2.39 -0.02 1.89 16 30 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.41 6.87 7.45 -92.71 -0.69 6.17 16 33 H 0.07 1.55 8.07 -2.38 -0.02 1.53 16 34 H 0.04 1.45 6.36 -2.39 -0.02 1.43 16 35 H 0.10 0.79 8.14 -2.38 -0.02 0.78 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.08 1.20 5.93 -2.38 -0.01 1.19 16 43 H 0.11 3.30 7.73 -2.39 -0.02 3.28 16 44 H 0.09 3.11 7.91 -2.39 -0.02 3.09 16 45 H 0.26 16.86 7.12 -92.71 -0.66 16.20 16 Total: -1.00 -86.76 380.72 4.28 -82.47 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.43 Total: 17.60 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.11 Total: 4.76 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.12 Total: -103.35 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.08 Total: -41.70 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.38 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.11 Total: -10.17 kcal Total: -86.76 4.28 -82.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081896337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.011 kcal (2) G-P(sol) polarization free energy of solvation -86.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds