Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47248 * 2 1 4 4 C 1.47202 * 109.47127 * 120.00449 * 2 1 3 5 5 N 2.60797 * 109.47123 * 120.00348 * 2 1 3 6 6 C 1.50705 * 109.47478 * 240.00336 * 2 1 3 7 7 O 1.21284 * 120.00032 * 240.00451 * 6 2 1 8 8 N 1.34780 * 119.99891 * 59.99862 * 6 2 1 9 9 C 1.46495 * 119.99773 * 180.02562 * 8 6 2 10 10 C 1.53007 * 109.46855 * 174.72811 * 9 8 6 11 11 H 1.08994 * 109.58547 * 312.79771 * 10 9 8 12 12 C 1.53191 * 109.70302 * 192.44580 * 10 9 8 13 13 C 1.53037 * 109.31524 * 185.50792 * 12 10 9 14 14 C 1.53040 * 109.53812 * 61.36567 * 13 12 10 15 15 C 1.53626 * 109.24064 * 298.51240 * 14 13 12 16 16 N 1.46927 * 108.54232 * 54.85833 * 15 14 13 17 17 C 1.34773 * 120.63428 * 126.37069 * 16 15 14 18 18 O 1.21281 * 120.00212 * 174.60640 * 17 16 15 19 19 C 1.50703 * 119.99966 * 354.60621 * 17 16 15 20 20 S 1.80998 * 109.47491 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00167 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99807 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00013 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00199 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99841 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47547 * 270.00307 * 25 23 21 27 27 H 1.48508 * 109.46931 * 150.00323 * 25 23 21 28 28 H 1.48497 * 109.47248 * 30.00955 * 25 23 21 29 29 H 1.09006 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47372 * 300.00002 * 1 2 3 31 31 H 1.09003 * 109.47015 * 60.00154 * 1 2 3 32 32 H 0.97003 * 120.00010 * 359.97438 * 8 6 2 33 33 H 1.08996 * 109.47790 * 54.72630 * 9 8 6 34 34 H 1.09002 * 109.46829 * 294.72370 * 9 8 6 35 35 H 1.09006 * 109.50023 * 305.45799 * 12 10 9 36 36 H 1.09004 * 109.49937 * 65.55298 * 12 10 9 37 37 H 1.08998 * 109.46309 * 181.38312 * 13 12 10 38 38 H 1.09002 * 109.45931 * 301.36296 * 13 12 10 39 39 H 1.08994 * 109.50003 * 58.58571 * 14 13 12 40 40 H 1.08995 * 109.49867 * 178.65218 * 14 13 12 41 41 H 1.08996 * 109.74381 * 295.12077 * 15 14 13 42 42 H 1.09005 * 109.66605 * 174.54822 * 15 14 13 43 43 H 1.09001 * 109.46835 * 59.99736 * 19 17 16 44 44 H 1.09006 * 109.46750 * 300.00436 * 19 17 16 45 45 H 0.96997 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 1.2018 5 7 2.3993 -1.2295 2.1293 6 6 2.0324 -0.7103 -1.2305 7 8 2.7297 -1.6965 -1.1193 8 7 1.7068 -0.2498 -2.4546 9 6 2.1948 -0.9407 -3.6508 10 6 1.5795 -0.2998 -4.8965 11 1 0.5068 -0.1736 -4.7505 12 6 1.8302 -1.1941 -6.1147 13 6 1.3338 -0.4828 -7.3755 14 6 2.1102 0.8222 -7.5663 15 6 1.8584 1.7419 -6.3618 16 7 2.2016 1.0097 -5.1351 17 6 3.0663 1.5319 -4.2429 18 8 3.2671 0.9650 -3.1896 19 6 3.7838 2.8201 -4.5540 20 16 4.8668 3.2568 -3.1711 21 6 5.5585 4.7563 -3.7857 22 1 5.2672 5.1269 -4.7574 23 6 6.4784 5.4607 -3.0215 24 7 6.9947 6.5812 -3.4804 25 14 6.9827 4.8193 -1.3411 26 1 6.0727 5.3728 -0.3063 27 1 8.3772 5.2386 -1.0493 28 1 6.8994 3.3367 -1.3317 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1488 0.5386 -2.5436 33 1 1.9103 -1.9918 -3.6048 34 1 3.2807 -0.8599 -3.6993 35 1 2.8980 -1.3935 -6.2061 36 1 1.2932 -2.1347 -5.9923 37 1 1.4886 -1.1272 -8.2409 38 1 0.2714 -0.2613 -7.2731 39 1 3.1752 0.6038 -7.6440 40 1 1.7728 1.3164 -8.4773 41 1 0.8079 2.0312 -6.3328 42 1 2.4825 2.6318 -6.4429 43 1 3.0536 3.6144 -4.7089 44 1 4.3810 2.6944 -5.4571 45 1 7.6379 7.0732 -2.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081896338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -21.447628 kcal Electronic energy + Delta-G solvation = -27908.783895 eV Core-core repulsion = 24053.696941 eV Total energy + Delta-G solvation = -3855.086954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88354 -39.53037 -37.38082 -36.55137 -34.91009 -33.52462 -33.07887 -32.48517 -31.55883 -29.22069 -26.91258 -25.66663 -25.37414 -24.57884 -22.51836 -21.39768 -20.63627 -19.35427 -18.21409 -17.61628 -17.13887 -16.64045 -16.28176 -15.81671 -15.39139 -15.15307 -15.01405 -14.70391 -14.41122 -14.17930 -14.00044 -13.89060 -13.50389 -13.34364 -13.23201 -12.90476 -12.82624 -12.79813 -12.65241 -12.41420 -12.34074 -12.10986 -11.92904 -11.53520 -11.50383 -11.30743 -11.27916 -11.05526 -10.99526 -10.90442 -10.64350 -9.89890 -9.79375 -9.15667 -9.05168 -8.86779 -8.55001 -8.45659 -6.97414 -6.33829 -4.05982 2.50821 2.58998 2.65655 2.78666 2.90927 3.08681 3.28642 3.39073 3.47223 3.53024 3.79925 4.26097 4.29510 4.47661 4.53246 4.63766 4.64756 4.68971 4.79045 4.87116 4.92836 4.98469 5.05636 5.08613 5.19665 5.26331 5.35350 5.40662 5.45228 5.52577 5.61141 5.64672 5.66127 5.72151 5.73835 5.75652 5.92424 5.96113 6.08764 6.45943 6.55462 7.32372 7.45899 7.62569 7.89104 8.30385 8.32631 8.36286 9.12557 10.75397 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.004960 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.747574 B = 5643.952327 C = 8861.035344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.016 4.016 3 H 0.143 0.857 4 C 0.229 3.771 5 N -0.422 5.422 6 C 0.531 3.469 7 O -0.542 6.542 8 N -0.682 5.682 9 C 0.133 3.867 10 C 0.138 3.862 11 H 0.076 0.924 12 C -0.128 4.128 13 C -0.117 4.117 14 C -0.138 4.138 15 C 0.108 3.892 16 N -0.618 5.618 17 C 0.524 3.476 18 O -0.497 6.497 19 C -0.123 4.123 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.087 0.913 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.855 3.145 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.890 -11.751 -7.855 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 H 0.161 0.839 4 C -0.090 4.090 5 N -0.097 5.097 6 C 0.314 3.686 7 O -0.419 6.419 8 N -0.332 5.332 9 C 0.009 3.991 10 C 0.034 3.966 11 H 0.094 0.906 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.176 4.176 15 C -0.015 4.015 16 N -0.355 5.355 17 C 0.311 3.689 18 O -0.371 6.371 19 C -0.273 4.273 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.105 0.895 23 C -0.111 4.111 24 N -0.516 5.516 25 Si 0.680 3.320 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.232 0.768 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.369 -13.948 -4.793 22.786 hybrid contribution -0.105 1.534 -1.195 1.948 sum -17.474 -12.414 -5.988 22.256 Atomic orbital electron populations 1.21763 0.90059 1.03795 1.04186 1.18872 0.98278 1.00873 0.86009 0.83915 1.28109 0.93516 0.93583 0.93828 1.81143 1.07820 1.08408 1.12343 1.19611 0.80571 0.84420 0.83967 1.90743 1.37777 1.26865 1.86547 1.45535 1.52051 1.30866 1.04737 1.21434 1.01550 0.94293 0.81781 1.21429 0.97055 0.83237 0.94844 0.90596 1.21897 1.02790 0.98172 0.93858 1.21487 0.99820 0.96619 0.97520 1.22017 1.01478 0.96204 0.97906 1.21846 1.01203 0.95195 0.83243 1.48160 1.45889 1.19326 1.22145 1.20350 0.78753 0.86320 0.83428 1.90860 1.62346 1.60057 1.23800 1.23345 1.02028 0.96890 1.05070 1.84780 1.51889 1.31477 1.23215 1.22292 1.29922 1.06809 1.07933 0.89474 1.24695 0.94410 0.93901 0.98138 1.69932 1.28829 1.14690 1.38161 0.86769 0.78866 0.82285 0.84121 1.19217 1.19942 1.15945 0.91290 0.90452 0.90153 0.76809 0.91659 0.89205 0.90895 0.90506 0.91510 0.91740 0.91150 0.90675 0.91281 0.89037 0.88828 0.88779 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.04 37.16 0.34 -0.57 16 2 C -0.02 -0.17 3.10 -94.56 -0.29 -0.46 16 3 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.23 3.29 13.88 -20.76 -0.29 3.00 16 5 N -0.42 -7.16 18.54 42.15 0.78 -6.38 16 6 C 0.53 7.24 6.85 -10.98 -0.08 7.16 16 7 O -0.54 -9.93 16.02 5.55 0.09 -9.84 16 8 N -0.68 -7.64 3.06 -60.29 -0.18 -7.82 16 9 C 0.13 1.49 4.32 -4.04 -0.02 1.47 16 10 C 0.14 1.14 2.90 -67.60 -0.20 0.94 16 11 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 12 C -0.13 -0.88 5.35 -26.61 -0.14 -1.02 16 13 C -0.12 -0.67 5.88 -26.69 -0.16 -0.83 16 14 C -0.14 -0.91 6.10 -26.39 -0.16 -1.07 16 15 C 0.11 0.84 6.38 -3.48 -0.02 0.82 16 16 N -0.62 -6.18 2.97 -164.95 -0.49 -6.67 16 17 C 0.52 7.51 7.33 -10.99 -0.08 7.43 16 18 O -0.50 -8.29 9.57 5.56 0.05 -8.23 16 19 C -0.12 -2.09 4.51 36.01 0.16 -1.93 16 20 S -0.14 -3.28 18.55 -107.50 -1.99 -5.27 16 21 C -0.52 -14.37 10.04 30.94 0.31 -14.06 16 22 H 0.09 2.51 8.03 -52.49 -0.42 2.09 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -25.94 13.97 55.49 0.78 -25.17 16 25 Si 0.85 21.36 27.74 -169.99 -4.71 16.65 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.35 7.56 -51.93 -0.39 -0.04 16 32 H 0.40 3.61 7.45 -40.82 -0.30 3.31 16 33 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.09 1.36 6.36 -51.93 -0.33 1.02 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.79 5.93 -51.93 -0.31 0.49 16 43 H 0.09 1.48 7.72 -51.92 -0.40 1.07 16 44 H 0.09 1.57 7.91 -51.91 -0.41 1.16 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -36.30 379.46 -7.48 -43.78 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.79 Total: -0.33 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.72 Total: 3.56 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.88 Total: -46.04 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.14 Total: -18.07 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.99 Total: -5.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.30 -7.48 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081896338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.336 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds