Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47186 * 2 1 4 4 C 1.47199 * 109.47037 * 239.99571 * 2 1 3 5 5 N 2.60796 * 109.47094 * 239.99768 * 2 1 3 6 6 C 1.50702 * 109.46660 * 120.00052 * 2 1 3 7 7 O 1.21280 * 120.00129 * 105.28833 * 6 2 1 8 8 N 1.34770 * 120.00053 * 285.28140 * 6 2 1 9 9 C 1.46932 * 120.63295 * 356.37137 * 8 6 2 10 10 C 1.53187 * 108.77442 * 126.36793 * 9 8 6 11 11 C 1.53037 * 109.31626 * 54.63703 * 10 9 8 12 12 C 1.53034 * 109.53601 * 298.63557 * 11 10 9 13 13 C 1.46925 * 120.63185 * 176.34599 * 8 6 2 14 14 H 1.09007 * 109.58723 * 113.84754 * 13 8 6 15 15 C 1.53001 * 109.58757 * 353.56388 * 13 8 6 16 16 N 1.46502 * 109.46842 * 72.52432 * 15 13 8 17 17 C 1.34778 * 119.99887 * 174.64610 * 16 15 13 18 18 O 1.21289 * 119.99841 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00159 * 180.02562 * 17 16 15 20 20 S 1.81005 * 109.47006 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99767 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99978 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99835 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00098 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99877 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46972 * 90.00483 * 25 23 21 27 27 H 1.48503 * 109.46973 * 209.99783 * 25 23 21 28 28 H 1.48493 * 109.47453 * 330.00254 * 25 23 21 29 29 H 1.08997 * 109.47601 * 185.27860 * 1 2 3 30 30 H 1.09004 * 109.47130 * 305.28044 * 1 2 3 31 31 H 1.09004 * 109.47201 * 65.27595 * 1 2 3 32 32 H 1.09004 * 109.58333 * 6.58225 * 9 8 6 33 33 H 1.08993 * 109.70200 * 246.22543 * 9 8 6 34 34 H 1.09003 * 109.49523 * 294.68082 * 10 9 8 35 35 H 1.09004 * 109.52516 * 174.60862 * 10 9 8 36 36 H 1.09005 * 109.45891 * 58.65446 * 11 10 9 37 37 H 1.08998 * 109.46028 * 178.61067 * 11 10 9 38 38 H 1.09003 * 109.49854 * 181.31895 * 12 11 10 39 39 H 1.09004 * 109.49822 * 301.40610 * 12 11 10 40 40 H 1.09000 * 109.47382 * 192.52331 * 15 13 8 41 41 H 1.08996 * 109.46829 * 312.53040 * 15 13 8 42 42 H 0.96996 * 120.00353 * 354.65001 * 16 15 13 43 43 H 1.08994 * 109.47202 * 299.99766 * 19 17 16 44 44 H 1.08994 * 109.47336 * 60.00246 * 19 17 16 45 45 H 0.97000 * 119.99712 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1293 6 6 2.0322 -0.7104 1.2305 7 8 2.4954 -1.8276 1.1392 8 7 1.9667 -0.1044 2.4324 9 6 1.4822 1.2779 2.5485 10 6 0.3485 1.3182 3.5779 11 6 0.8385 0.7113 4.8946 12 6 1.2342 -0.7496 4.6688 13 6 2.3780 -0.8134 3.6518 14 1 3.2653 -0.3376 4.0696 15 6 2.6889 -2.2734 3.3160 16 7 3.9505 -2.3459 2.5747 17 6 4.4820 -3.5451 2.2648 18 8 3.9156 -4.5641 2.5993 19 6 5.7800 -3.6198 1.5028 20 16 6.2277 -5.3541 1.2423 21 6 7.7364 -5.1506 0.3552 22 1 8.1049 -4.1592 0.1367 23 6 8.4508 -6.2645 -0.0636 24 7 8.0010 -7.4728 0.2014 25 14 10.0500 -6.0487 -1.0047 26 1 11.1837 -5.9901 -0.0473 27 1 10.2402 -7.1968 -1.9273 28 1 9.9976 -4.7880 -1.7876 29 1 -0.3634 -1.0232 0.0945 30 1 -0.3633 0.5936 0.8389 31 1 -0.3634 0.4298 -0.9335 32 1 1.1102 1.6170 1.5817 33 1 2.2954 1.9261 2.8750 34 1 -0.5006 0.7444 3.2065 35 1 0.0442 2.3515 3.7445 36 1 1.7029 1.2706 5.2527 37 1 0.0413 0.7613 5.6363 38 1 1.5609 -1.1879 5.6118 39 1 0.3767 -1.3040 4.2873 40 1 2.7759 -2.8478 4.2383 41 1 1.8849 -2.6850 2.7060 42 1 4.4032 -1.5310 2.3069 43 1 5.6638 -3.1261 0.5380 44 1 6.5651 -3.1232 2.0729 45 1 8.5005 -8.2512 -0.0910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082267187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -15.065790 kcal Electronic energy + Delta-G solvation = -27723.571599 eV Core-core repulsion = 23868.761383 eV Total energy + Delta-G solvation = -3854.810216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35559 -38.65709 -38.06775 -36.72453 -34.95406 -33.76402 -32.67915 -32.31948 -31.72007 -29.20745 -26.89246 -25.54609 -25.31944 -24.71279 -22.93047 -21.58100 -20.23982 -19.68361 -17.96509 -17.83590 -17.44654 -16.37897 -15.95585 -15.92072 -15.46366 -15.10502 -14.94753 -14.89666 -14.70874 -14.31953 -14.02605 -13.90262 -13.47947 -13.29788 -13.27930 -12.98771 -12.91178 -12.79864 -12.50482 -12.49917 -12.39084 -12.15236 -11.85312 -11.70578 -11.51675 -11.45561 -11.19104 -11.08165 -10.97816 -10.90978 -10.66450 -9.69823 -9.54976 -9.13476 -9.02150 -8.96091 -8.28084 -8.07961 -6.35151 -6.10727 -3.79212 2.14892 2.16923 2.64012 2.83996 3.21716 3.29254 3.35209 3.42024 3.49150 3.53145 3.89566 3.98444 4.18870 4.31514 4.31684 4.37266 4.41389 4.50296 4.61290 4.71827 4.75238 4.95453 4.96675 5.06135 5.12259 5.23896 5.24756 5.34242 5.35678 5.41597 5.50897 5.52814 5.58595 5.64638 5.78137 5.85098 6.04332 6.09442 6.25737 6.33775 6.88801 6.95253 7.40422 7.70069 7.79817 8.02667 8.46230 8.96884 9.34310 10.96821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.002872 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.074653 B = 9746.904908 C =10856.136284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 H 0.132 0.868 4 C 0.209 3.791 5 N -0.398 5.398 6 C 0.505 3.495 7 O -0.479 6.479 8 N -0.609 5.609 9 C 0.101 3.899 10 C -0.137 4.137 11 C -0.119 4.119 12 C -0.128 4.128 13 C 0.138 3.862 14 H 0.081 0.919 15 C 0.134 3.866 16 N -0.706 5.706 17 C 0.538 3.462 18 O -0.528 6.528 19 C -0.149 4.149 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.389 0.611 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.619 27.265 9.209 34.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.149 0.851 4 C -0.111 4.111 5 N -0.072 5.072 6 C 0.289 3.711 7 O -0.351 6.351 8 N -0.345 5.345 9 C -0.021 4.021 10 C -0.175 4.175 11 C -0.157 4.157 12 C -0.167 4.167 13 C 0.035 3.965 14 H 0.099 0.901 15 C 0.009 3.991 16 N -0.359 5.359 17 C 0.324 3.676 18 O -0.404 6.404 19 C -0.300 4.300 20 S 0.166 5.834 21 C -0.681 4.681 22 H 0.089 0.911 23 C -0.137 4.137 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.223 0.777 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.707 23.919 8.278 32.078 hybrid contribution 1.737 2.111 -0.785 2.844 sum -17.970 26.030 7.492 32.505 Atomic orbital electron populations 1.21830 0.89645 1.04570 1.04146 1.18840 0.98758 0.99735 0.86107 0.85056 1.28050 0.94450 0.94344 0.94218 1.81286 1.06934 1.06915 1.12082 1.20108 0.79915 0.87271 0.83791 1.91114 1.41306 1.17950 1.84720 1.48020 1.66086 1.14427 1.05974 1.21900 0.97259 0.82266 1.00718 1.21952 0.98106 1.01841 0.95635 1.21503 1.01487 0.95526 0.97157 1.21906 0.98396 0.97404 0.99013 1.21575 0.97423 0.93130 0.84364 0.90068 1.21337 0.88890 0.93024 0.95813 1.45712 1.23581 1.08039 1.58521 1.20008 0.85845 0.82938 0.78781 1.90662 1.62338 1.34313 1.53054 1.23473 0.96742 1.07855 1.01885 1.85337 1.28272 0.96833 1.72966 1.22885 1.08437 0.95386 1.41384 0.91125 1.24981 0.98285 0.94472 0.95914 1.70030 1.38468 0.97585 1.44332 0.86186 0.82120 0.77919 0.79381 1.20314 1.20781 1.19759 0.90795 0.89937 0.90318 0.89256 0.90745 0.91106 0.90453 0.91543 0.91301 0.90083 0.90859 0.91651 0.90065 0.77749 0.89738 0.89851 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 8.86 37.16 0.33 -0.24 16 2 C -0.01 -0.06 2.24 -94.56 -0.21 -0.27 16 3 H 0.13 0.33 6.95 -51.93 -0.36 -0.03 16 4 C 0.21 2.48 13.93 -20.76 -0.29 2.19 16 5 N -0.40 -6.37 18.54 42.15 0.78 -5.59 16 6 C 0.50 4.55 6.50 -10.99 -0.07 4.48 16 7 O -0.48 -6.98 9.80 5.56 0.05 -6.93 16 8 N -0.61 -3.64 2.97 -165.22 -0.49 -4.14 16 9 C 0.10 0.23 5.70 -3.71 -0.02 0.21 16 10 C -0.14 -0.26 6.08 -26.62 -0.16 -0.42 16 11 C -0.12 -0.37 5.88 -26.69 -0.16 -0.52 16 12 C -0.13 -0.67 5.35 -26.62 -0.14 -0.81 16 13 C 0.14 1.00 2.90 -67.60 -0.20 0.80 16 14 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 15 C 0.13 1.67 4.31 -4.04 -0.02 1.65 16 16 N -0.71 -10.89 3.17 -60.29 -0.19 -11.08 16 17 C 0.54 11.51 7.56 -10.99 -0.08 11.42 16 18 O -0.53 -13.41 15.86 5.55 0.09 -13.32 16 19 C -0.15 -3.43 6.16 36.01 0.22 -3.21 16 20 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 21 C -0.53 -16.27 9.50 30.94 0.29 -15.97 16 22 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 23 C 0.07 2.19 5.49 -17.43 -0.10 2.09 16 24 N -0.87 -27.57 13.22 55.49 0.73 -26.83 16 25 Si 0.92 22.64 29.55 -169.99 -5.02 17.62 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.11 6.46 -51.93 -0.34 -0.22 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.03 4.63 -51.93 -0.24 -0.21 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 0.16 8.05 -51.93 -0.42 -0.26 16 35 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.08 1.21 6.35 -51.93 -0.33 0.88 16 42 H 0.39 5.14 8.00 -40.82 -0.33 4.82 16 43 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 44 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -42.01 379.67 -7.77 -49.77 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.63 Total: -2.62 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.60 Total: 1.41 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.83 Total: -47.64 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.14 Total: -20.25 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -42.01 -7.77 -49.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082267187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.706 kcal (2) G-P(sol) polarization free energy of solvation -42.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds