Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46710 * 2 1 4 4 C 1.47191 * 109.47454 * 120.00247 * 2 1 3 5 5 N 2.60797 * 109.47474 * 120.00392 * 2 1 3 6 6 C 1.50695 * 109.47018 * 240.00601 * 2 1 3 7 7 O 1.21286 * 120.00253 * 261.12733 * 6 2 1 8 8 N 1.34776 * 120.00187 * 81.12648 * 6 2 1 9 9 C 1.46922 * 120.63204 * 5.43083 * 8 6 2 10 10 C 1.53190 * 108.77742 * 126.41064 * 9 8 6 11 11 C 1.53040 * 109.31126 * 54.63980 * 10 9 8 12 12 C 1.53042 * 109.53542 * 298.63468 * 11 10 9 13 13 C 1.46927 * 120.63312 * 185.45491 * 8 6 2 14 14 H 1.09003 * 109.58863 * 113.79555 * 13 8 6 15 15 C 1.52998 * 109.70269 * 353.44142 * 13 8 6 16 16 N 1.46506 * 109.47252 * 67.39831 * 15 13 8 17 17 C 1.34770 * 120.00446 * 174.59680 * 16 15 13 18 18 O 1.21289 * 119.99984 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00409 * 180.02562 * 17 16 15 20 20 S 1.81000 * 109.47173 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99728 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99972 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00082 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00449 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99800 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46680 * 90.00547 * 25 23 21 27 27 H 1.48495 * 109.47031 * 209.99991 * 25 23 21 28 28 H 1.48497 * 109.47165 * 330.00356 * 25 23 21 29 29 H 1.08994 * 109.47681 * 55.12072 * 1 2 3 30 30 H 1.09002 * 109.46604 * 175.12128 * 1 2 3 31 31 H 1.08998 * 109.46970 * 295.11512 * 1 2 3 32 32 H 1.09002 * 109.58616 * 6.62284 * 9 8 6 33 33 H 1.08999 * 109.58857 * 246.20360 * 9 8 6 34 34 H 1.08996 * 109.49909 * 294.68587 * 10 9 8 35 35 H 1.09005 * 109.50011 * 174.58527 * 10 9 8 36 36 H 1.09003 * 109.46251 * 58.65151 * 11 10 9 37 37 H 1.08999 * 109.46333 * 178.62487 * 11 10 9 38 38 H 1.09005 * 109.49485 * 181.31749 * 12 11 10 39 39 H 1.08999 * 109.49501 * 301.41205 * 12 11 10 40 40 H 1.09001 * 109.47554 * 187.39803 * 15 13 8 41 41 H 1.09000 * 109.47561 * 307.40076 * 15 13 8 42 42 H 0.97007 * 119.99712 * 354.59389 * 16 15 13 43 43 H 1.08998 * 109.46864 * 300.00158 * 19 17 16 44 44 H 1.09000 * 109.46693 * 59.99621 * 19 17 16 45 45 H 0.96996 * 120.00442 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6939 1.2018 5 7 2.3995 -1.2295 2.1293 6 6 2.0323 -0.7103 -1.2305 7 8 2.3872 -1.8679 -1.1602 8 7 2.0872 -0.0591 -2.4093 9 6 1.7743 1.3742 -2.4880 10 6 2.9410 2.0969 -3.1687 11 6 3.2230 1.4400 -4.5219 12 6 3.6195 -0.0226 -4.3080 13 6 2.4605 -0.7693 -3.6401 14 1 1.6070 -0.8001 -4.3174 15 6 2.8974 -2.1957 -3.3004 16 7 1.7446 -2.9561 -2.8113 17 6 1.8666 -4.2731 -2.5526 18 8 2.9308 -4.8290 -2.7251 19 6 0.6807 -5.0554 -2.0500 20 16 1.1596 -6.7829 -1.7999 21 6 -0.3701 -7.4446 -1.2279 22 1 -1.2331 -6.8028 -1.1299 23 6 -0.4655 -8.7904 -0.9022 24 7 -1.6083 -9.2849 -0.4754 25 14 1.0275 -9.9004 -1.0710 26 1 1.7900 -9.9014 0.2033 27 1 0.5839 -11.2826 -1.3834 28 1 1.8954 -9.3994 -2.1668 29 1 -0.3634 0.5876 -0.8430 30 1 -0.3632 -1.0240 -0.0874 31 1 -0.3633 0.4362 0.9305 32 1 1.6335 1.7732 -1.4834 33 1 0.8649 1.5183 -3.0713 34 1 3.8282 2.0288 -2.5392 35 1 2.6814 3.1447 -3.3201 36 1 2.3276 1.4865 -5.1418 37 1 4.0367 1.9677 -5.0192 38 1 3.8428 -0.4834 -5.2702 39 1 4.5004 -0.0708 -3.6678 40 1 3.2969 -2.6759 -4.1937 41 1 3.6668 -2.1661 -2.5289 42 1 0.8934 -2.5116 -2.6736 43 1 0.3401 -4.6319 -1.1052 44 1 -0.1249 -5.0044 -2.7825 45 1 -1.6751 -10.2255 -0.2481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082267188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -13.011478 kcal Electronic energy + Delta-G solvation = -27838.285675 eV Core-core repulsion = 23983.564540 eV Total energy + Delta-G solvation = -3854.721135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40873 -38.77086 -38.12419 -36.75208 -34.97061 -33.83373 -32.69740 -32.35541 -31.82303 -29.35527 -26.88928 -25.66222 -25.48262 -24.74207 -22.91896 -21.54980 -20.43029 -19.84022 -17.99127 -17.86182 -17.44024 -16.32680 -16.14575 -15.93021 -15.78752 -15.21350 -14.91525 -14.86506 -14.64270 -14.33859 -14.15818 -13.83697 -13.63241 -13.37693 -13.24819 -13.12923 -12.91008 -12.79366 -12.72719 -12.56640 -12.51196 -12.17666 -11.94038 -11.72781 -11.62045 -11.47790 -11.22119 -11.17313 -11.10150 -10.92895 -10.47780 -9.77519 -9.54821 -9.27159 -9.14918 -8.91804 -8.37188 -8.33693 -6.79452 -6.21015 -3.90615 2.07595 2.16084 2.59168 2.79579 2.93077 3.32518 3.40435 3.47113 3.51165 3.58531 3.81530 3.92458 4.14209 4.30417 4.33119 4.41438 4.41678 4.50754 4.55788 4.68980 4.73295 4.89622 4.91995 5.01404 5.08056 5.17938 5.18320 5.21657 5.32288 5.34878 5.45595 5.52770 5.54079 5.61282 5.64592 5.79633 5.93644 5.96332 6.16844 6.20244 6.81994 6.85549 7.35882 7.75430 7.88096 8.02446 8.49399 8.81448 9.25927 10.88406 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.003049 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.337055 B = 9181.259880 C =10216.310369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 H 0.131 0.869 4 C 0.211 3.789 5 N -0.402 5.402 6 C 0.503 3.497 7 O -0.479 6.479 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.138 4.138 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.138 3.862 14 H 0.083 0.917 15 C 0.133 3.867 16 N -0.704 5.704 17 C 0.536 3.464 18 O -0.529 6.529 19 C -0.119 4.119 20 S -0.143 6.143 21 C -0.518 4.518 22 H 0.087 0.913 23 C 0.095 3.905 24 N -0.883 5.883 25 Si 0.857 3.143 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.390 0.610 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 32.683 -8.369 34.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.149 0.851 4 C -0.108 4.108 5 N -0.076 5.076 6 C 0.287 3.713 7 O -0.351 6.351 8 N -0.346 5.346 9 C -0.019 4.019 10 C -0.176 4.176 11 C -0.156 4.156 12 C -0.168 4.168 13 C 0.035 3.965 14 H 0.101 0.899 15 C 0.009 3.991 16 N -0.357 5.357 17 C 0.322 3.678 18 O -0.404 6.404 19 C -0.270 4.270 20 S 0.083 5.917 21 C -0.666 4.666 22 H 0.105 0.895 23 C -0.114 4.114 24 N -0.520 5.520 25 Si 0.682 3.318 26 H -0.193 1.193 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.223 0.777 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.355 30.129 -7.139 31.825 hybrid contribution -1.414 0.619 0.023 1.544 sum 5.941 30.748 -7.116 32.115 Atomic orbital electron populations 1.21787 0.89276 1.04859 1.04253 1.18884 0.99055 0.99553 0.86001 0.85113 1.28087 0.94314 0.94226 0.94187 1.81261 1.07404 1.07001 1.11981 1.20093 0.80056 0.87201 0.83911 1.91092 1.44554 1.15747 1.83669 1.48010 1.69515 1.10001 1.07067 1.21891 0.98265 0.79578 1.02185 1.21950 0.98852 0.99568 0.97242 1.21504 1.01996 0.95230 0.96917 1.21909 0.97884 0.95540 1.01459 1.21580 0.97969 0.91678 0.85255 0.89915 1.21374 0.90733 0.87762 0.99194 1.45732 1.12888 1.08816 1.68296 1.19988 0.89587 0.81435 0.76765 1.90665 1.28886 1.69379 1.51501 1.23224 0.99092 1.00698 1.03994 1.84765 1.19738 1.00104 1.87046 1.22341 0.95705 0.98065 1.50473 0.89540 1.24706 0.96198 0.97117 0.93333 1.69939 1.24585 1.14540 1.42967 0.86729 0.83538 0.80504 0.81072 1.19257 1.20027 1.15879 0.89959 0.90508 0.90233 0.89350 0.90587 0.91229 0.90396 0.91478 0.91318 0.90093 0.90907 0.91647 0.89832 0.77679 0.88996 0.89042 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.09 37.16 0.34 -0.30 16 2 C -0.01 -0.07 2.27 -94.56 -0.21 -0.28 16 3 H 0.13 0.30 6.23 -51.93 -0.32 -0.02 16 4 C 0.21 2.45 13.98 -20.76 -0.29 2.16 16 5 N -0.40 -6.23 18.54 42.16 0.78 -5.45 16 6 C 0.50 4.36 6.13 -10.99 -0.07 4.30 16 7 O -0.48 -6.72 9.86 5.55 0.05 -6.67 16 8 N -0.61 -3.46 2.97 -165.23 -0.49 -3.95 16 9 C 0.10 0.21 5.90 -3.71 -0.02 0.19 16 10 C -0.14 -0.30 6.08 -26.61 -0.16 -0.46 16 11 C -0.12 -0.37 5.88 -26.69 -0.16 -0.52 16 12 C -0.13 -0.66 5.37 -26.61 -0.14 -0.81 16 13 C 0.14 0.94 2.94 -67.60 -0.20 0.74 16 14 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 15 C 0.13 1.59 4.29 -4.04 -0.02 1.57 16 16 N -0.70 -10.05 3.14 -60.29 -0.19 -10.24 16 17 C 0.54 10.71 7.52 -10.99 -0.08 10.63 16 18 O -0.53 -12.69 15.85 5.55 0.09 -12.61 16 19 C -0.12 -2.56 6.16 36.01 0.22 -2.34 16 20 S -0.14 -3.90 18.55 -107.50 -1.99 -5.89 16 21 C -0.52 -15.70 10.04 30.94 0.31 -15.39 16 22 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 23 C 0.09 2.89 5.50 -17.43 -0.10 2.80 16 24 N -0.88 -27.62 13.97 55.49 0.78 -26.85 16 25 Si 0.86 22.88 27.74 -169.99 -4.71 18.16 16 26 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.27 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.23 -6.27 6.74 56.52 0.38 -5.89 16 29 H 0.08 0.14 7.75 -51.93 -0.40 -0.26 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.02 5.43 -51.93 -0.28 -0.26 16 33 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 41 H 0.08 1.23 6.49 -51.93 -0.34 0.89 16 42 H 0.39 4.59 7.67 -40.82 -0.31 4.27 16 43 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 44 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 45 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -41.09 378.47 -7.30 -48.39 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.73 Total: -2.89 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.58 Total: 2.29 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.88 Total: -46.48 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.14 Total: -19.28 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.71 Total: 18.16 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.99 Total: -5.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -41.09 -7.30 -48.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082267188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.375 kcal (2) G-P(sol) polarization free energy of solvation -41.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds