Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99983 * 2 1 4 4 H 1.09001 * 109.46655 * 29.99750 * 3 2 1 5 5 C 1.53005 * 109.46920 * 269.99857 * 3 2 1 6 6 C 1.50696 * 109.47216 * 149.99960 * 3 2 1 7 7 N 1.28650 * 124.71729 * 225.28356 * 6 3 2 8 8 C 1.33563 * 115.76595 * 180.15516 * 7 6 3 9 9 C 1.47263 * 123.14452 * 179.82955 * 8 7 6 10 10 O 1.21634 * 120.00196 * 186.11968 * 9 8 7 11 11 N 1.34780 * 119.99593 * 6.11607 * 9 8 7 12 12 C 1.46496 * 120.00352 * 356.29271 * 11 9 8 13 13 C 1.46508 * 119.99638 * 176.28689 * 11 9 8 14 14 C 1.52998 * 109.47008 * 94.86812 * 13 11 9 15 15 H 1.09007 * 112.74092 * 316.52394 * 14 13 11 16 16 C 1.53497 * 113.52024 * 87.31275 * 14 13 11 17 17 C 1.53238 * 83.43061 * 140.68737 * 16 14 13 18 18 N 1.47060 * 113.46691 * 185.77583 * 14 13 11 19 19 C 1.36938 * 136.05875 * 38.01096 * 18 14 13 20 20 H 1.08002 * 119.99793 * 354.79856 * 19 18 14 21 21 C 1.38812 * 119.99929 * 174.53120 * 19 18 14 22 22 N 1.31618 * 120.00364 * 0.27340 * 21 19 18 23 23 Si 1.86807 * 119.99676 * 180.27208 * 21 19 18 24 24 H 1.48497 * 109.47063 * 59.99828 * 23 21 19 25 25 H 1.48500 * 109.46779 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47082 * 299.99739 * 23 21 19 27 27 C 1.35212 * 113.71543 * 359.55755 * 8 7 6 28 28 S 1.70770 * 124.72160 * 44.97529 * 6 3 2 29 29 H 1.08996 * 109.47312 * 299.99817 * 1 2 3 30 30 H 1.09004 * 109.47207 * 60.00249 * 1 2 3 31 31 H 1.09004 * 109.46626 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47185 * 300.00053 * 5 3 2 33 33 H 1.08998 * 109.47163 * 60.00070 * 5 3 2 34 34 H 1.08998 * 109.47031 * 179.97438 * 5 3 2 35 35 H 1.09006 * 109.46995 * 275.88612 * 12 11 9 36 36 H 1.08996 * 109.47337 * 35.88250 * 12 11 9 37 37 H 1.08997 * 109.47405 * 155.89201 * 12 11 9 38 38 H 1.09002 * 109.47130 * 334.86991 * 13 11 9 39 39 H 1.08994 * 109.46939 * 214.86840 * 13 11 9 40 40 H 1.09002 * 114.20989 * 254.44153 * 16 14 13 41 41 H 1.08996 * 114.20942 * 27.07436 * 16 14 13 42 42 H 1.08993 * 113.38676 * 219.29617 * 17 16 14 43 43 H 1.09002 * 113.46800 * 88.92901 * 17 16 14 44 44 H 0.96998 * 119.99886 * 180.02562 * 22 21 19 45 45 H 1.07993 * 125.58567 * 180.23154 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3386 1.2639 0.7104 7 7 3.7303 2.1248 1.5825 8 6 4.9445 1.9171 2.0986 9 6 5.5538 2.8025 3.1052 10 8 6.7051 2.6244 3.4549 11 7 4.8357 3.8104 3.6391 12 6 3.4770 4.0758 3.1598 13 6 5.4138 4.6406 4.6988 14 6 6.0371 5.8942 4.0818 15 1 6.6110 5.6794 3.1802 16 6 5.0440 7.0523 3.9126 17 6 6.2374 7.9075 4.3513 18 7 6.7624 6.7265 5.0533 19 6 7.5674 6.5012 6.1379 20 1 7.7230 5.4938 6.4949 21 6 8.1879 7.5670 6.7751 22 7 7.9982 8.7947 6.3401 23 14 9.2921 7.2588 8.2500 24 1 10.4170 6.3756 7.8502 25 1 9.8290 8.5518 8.7450 26 1 8.5075 6.6041 9.3275 27 6 5.5598 0.8145 1.6147 28 16 4.5302 0.0636 0.4753 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.8829 1.0775 -1.9563 33 1 1.2569 1.8014 -1.9564 34 1 2.6606 2.7673 -1.4426 35 1 3.5219 4.7010 2.2680 36 1 2.9863 3.1330 2.9181 37 1 2.9118 4.5909 3.9365 38 1 6.1821 4.0744 5.2255 39 1 4.6317 4.9312 5.4001 40 1 4.7248 7.2209 2.8841 41 1 4.2178 7.0401 4.6235 42 1 5.9627 8.7233 5.0198 43 1 6.8652 8.2344 3.5223 44 1 8.4321 9.5393 6.7851 45 1 6.5408 0.4656 1.9011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085595450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = 45.842362 kcal Electronic energy + Delta-G solvation = -27212.641484 eV Core-core repulsion = 23360.472444 eV Total energy + Delta-G solvation = -3852.169041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.77428 -39.18637 -38.43342 -37.71856 -35.13787 -32.91200 -32.10748 -29.97206 -28.78125 -27.84629 -27.35145 -26.43582 -25.62344 -23.76566 -23.35552 -21.96167 -20.83945 -19.62205 -19.16950 -18.27459 -16.83812 -16.72741 -16.71135 -16.20682 -15.96165 -15.64701 -15.32488 -14.79827 -14.49445 -14.17320 -14.00117 -13.57323 -13.38602 -13.28060 -13.14529 -12.85721 -12.69455 -12.60692 -12.50390 -12.14629 -11.96353 -11.73089 -11.49352 -11.42329 -11.03223 -10.81614 -10.70231 -10.38513 -10.36703 -10.01707 -9.87176 -9.79242 -9.78561 -9.57616 -9.33866 -9.13815 -8.71735 -8.17456 -6.79349 -5.69338 -3.00737 0.29901 0.99372 1.43197 1.80965 2.90044 3.28944 3.41534 3.46289 3.49933 3.51876 3.92809 4.39561 4.54242 4.57872 4.63184 4.83486 4.91509 4.94389 5.08470 5.17151 5.24340 5.25409 5.28041 5.43725 5.51102 5.52759 5.64730 5.65009 5.83938 5.90761 6.05964 6.20880 6.24825 6.37292 6.52080 6.53871 6.66310 6.75604 6.95646 7.16514 7.31212 7.48498 7.63696 7.64229 8.06147 8.35071 9.12684 9.78692 10.73375 11.48976 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002447 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.206946 B =11439.748930 C =12114.549463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.170 4.170 6 C 0.009 3.991 7 N -0.426 5.426 8 C 0.019 3.981 9 C 0.584 3.416 10 O -0.530 6.530 11 N -0.590 5.590 12 C 0.076 3.924 13 C 0.114 3.886 14 C 0.134 3.866 15 H 0.042 0.958 16 C -0.167 4.167 17 C 0.159 3.841 18 N -0.601 5.601 19 C -0.214 4.214 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C -0.231 4.231 28 S 0.245 5.755 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.253 0.747 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.130 -18.087 -17.215 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.112 0.888 5 C -0.228 4.228 6 C -0.269 4.269 7 N -0.144 5.144 8 C -0.116 4.116 9 C 0.368 3.632 10 O -0.407 6.407 11 N -0.322 5.322 12 C -0.067 4.067 13 C -0.009 4.009 14 C 0.026 3.974 15 H 0.060 0.940 16 C -0.205 4.205 17 C 0.033 3.967 18 N -0.326 5.326 19 C -0.342 4.342 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.373 4.373 28 S 0.502 5.498 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -17.468 -18.660 -17.192 30.804 hybrid contribution 0.990 0.850 1.389 1.906 sum -16.479 -17.810 -15.803 28.957 Atomic orbital electron populations 1.22856 0.79766 1.03304 1.00506 1.87905 1.20658 1.26442 1.95122 1.20283 0.88316 0.86037 0.95025 0.88793 1.22301 1.03346 1.02634 0.94548 1.26939 1.02162 0.97227 1.00576 1.67257 1.12696 1.26366 1.08054 1.20498 0.91041 0.97758 1.02337 1.17116 0.85273 0.80239 0.80596 1.90854 1.16298 1.72132 1.61403 1.47694 1.15947 1.30455 1.38056 1.22269 0.82113 1.03334 0.98987 1.21973 0.98552 0.92094 0.88251 1.22407 0.91657 0.90604 0.92733 0.94022 1.23693 0.97824 0.99713 0.99286 1.21867 0.88971 0.92083 0.93779 1.45679 1.56942 1.01783 1.28241 1.18899 1.20205 0.93345 1.01720 0.90180 1.24803 1.00345 0.95382 0.99946 1.69837 1.47082 0.97686 1.42257 0.86216 0.80700 0.76692 0.82295 1.21138 1.21619 1.21072 1.26752 1.07159 1.00123 1.03253 1.82865 1.05705 1.26217 1.34983 0.93462 0.93520 0.89111 0.91288 0.90996 0.90516 0.92850 0.88276 0.91966 0.89734 0.90320 0.92831 0.90597 0.91664 0.95790 0.93698 0.79236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.38 -2.82 10.17 -35.23 -0.36 -3.18 16 3 C 0.16 1.20 3.23 -27.88 -0.09 1.11 16 4 H 0.09 0.61 7.79 -51.93 -0.40 0.21 16 5 C -0.17 -0.97 9.51 37.16 0.35 -0.61 16 6 C 0.01 0.09 6.30 -13.61 -0.09 0.01 16 7 N -0.43 -5.19 6.73 -8.51 -0.06 -5.24 16 8 C 0.02 0.27 6.50 -84.52 -0.55 -0.28 16 9 C 0.58 10.42 7.64 -12.59 -0.10 10.32 16 10 O -0.53 -11.36 16.27 5.25 0.09 -11.28 16 11 N -0.59 -9.96 2.87 -182.91 -0.53 -10.49 16 12 C 0.08 1.00 9.56 59.84 0.57 1.57 16 13 C 0.11 2.24 5.41 -4.04 -0.02 2.22 16 14 C 0.13 2.96 4.32 -72.40 -0.31 2.65 16 15 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.17 -3.26 8.00 -26.35 -0.21 -3.47 16 17 C 0.16 3.92 7.26 -8.64 -0.06 3.86 16 18 N -0.60 -16.17 3.65 -177.16 -0.65 -16.82 16 19 C -0.21 -6.28 10.55 -15.06 -0.16 -6.44 16 20 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -28.34 11.66 55.49 0.65 -27.70 16 23 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 27 C -0.23 -2.75 10.62 29.65 0.31 -2.43 16 28 S 0.25 2.17 22.73 -107.50 -2.44 -0.27 16 29 H 0.05 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.05 0.14 7.87 -51.93 -0.41 -0.26 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.22 5.17 -51.93 -0.27 0.95 16 37 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 38 H 0.08 1.88 7.33 -51.93 -0.38 1.50 16 39 H 0.08 1.45 7.66 -51.93 -0.40 1.05 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 42 H 0.07 1.74 7.39 -51.93 -0.38 1.36 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.19 2.13 8.04 -52.49 -0.42 1.70 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -35.43 386.32 -8.67 -44.11 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.82 Total: -2.38 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 0.65 Total: 9.38 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.58 Total: -60.25 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.27 Total: -14.46 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.44 Total: -0.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.43 -8.67 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.948 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds