Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00533 * 2 1 4 4 H 1.09009 * 109.46480 * 29.99536 * 3 2 1 5 5 C 1.52998 * 109.47139 * 269.99959 * 3 2 1 6 6 C 1.50697 * 109.47367 * 149.99194 * 3 2 1 7 7 N 1.28642 * 124.72157 * 224.99835 * 6 3 2 8 8 C 1.33564 * 115.76713 * 180.02562 * 7 6 3 9 9 C 1.47273 * 123.14276 * 179.97438 * 8 7 6 10 10 O 1.21628 * 120.00021 * 184.83673 * 9 8 7 11 11 N 1.34774 * 119.99800 * 4.83918 * 9 8 7 12 12 C 1.46501 * 120.00208 * 5.12388 * 11 9 8 13 13 C 1.46499 * 119.99836 * 185.12967 * 11 9 8 14 14 C 1.53003 * 109.46977 * 275.53547 * 13 11 9 15 15 H 1.09004 * 113.03659 * 68.72268 * 14 13 11 16 16 C 1.53946 * 113.77265 * 296.97467 * 14 13 11 17 17 C 1.53942 * 86.29002 * 222.08889 * 16 14 13 18 18 N 1.47578 * 86.24013 * 23.54917 * 17 16 14 19 19 C 1.36943 * 134.48990 * 155.42567 * 18 17 16 20 20 H 1.08007 * 119.99407 * 185.51025 * 19 18 17 21 21 C 1.38807 * 120.00098 * 5.50783 * 19 18 17 22 22 N 1.31614 * 120.00076 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47259 * 89.99975 * 23 21 19 25 25 H 1.48497 * 109.47031 * 210.00239 * 23 21 19 26 26 H 1.48503 * 109.46986 * 330.00197 * 23 21 19 27 27 C 1.35205 * 113.71860 * 0.24893 * 8 7 6 28 28 S 1.70770 * 124.72049 * 45.00894 * 6 3 2 29 29 H 1.08999 * 109.47775 * 300.00414 * 1 2 3 30 30 H 1.09006 * 109.46875 * 60.00513 * 1 2 3 31 31 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47027 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.46901 * 299.99176 * 5 3 2 34 34 H 1.09004 * 109.47181 * 59.99648 * 5 3 2 35 35 H 1.09003 * 109.47400 * 275.73253 * 12 11 9 36 36 H 1.08994 * 109.47072 * 35.73124 * 12 11 9 37 37 H 1.08997 * 109.46985 * 155.73302 * 12 11 9 38 38 H 1.09003 * 109.47274 * 155.54363 * 13 11 9 39 39 H 1.09004 * 109.47150 * 35.53660 * 13 11 9 40 40 H 1.09000 * 113.74156 * 107.73881 * 16 14 13 41 41 H 1.09003 * 113.83740 * 336.45034 * 16 14 13 42 42 H 1.08998 * 113.76991 * 137.90401 * 17 16 14 43 43 H 1.08997 * 113.77272 * 269.19154 * 17 16 14 44 44 H 0.97007 * 120.00267 * 179.97438 * 22 21 19 45 45 H 1.07998 * 125.58870 * 179.75509 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3385 1.2638 0.7106 7 7 3.7324 2.1274 1.5788 8 6 4.9451 1.9175 2.0977 9 6 5.5552 2.8041 3.1031 10 8 6.6975 2.6093 3.4725 11 7 4.8476 3.8313 3.6137 12 6 3.4374 3.9997 3.2543 13 6 5.4888 4.7794 4.5281 14 6 5.4494 4.2208 5.9520 15 1 6.0892 3.3485 6.0858 16 6 4.0254 4.0369 6.5073 17 6 4.5730 4.6121 7.8260 18 7 5.6190 5.2477 7.0015 19 6 6.4221 6.3469 7.1499 20 1 7.0651 6.6592 6.3402 21 6 6.4097 7.0598 8.3409 22 7 5.6257 6.6795 9.3273 23 14 7.5046 8.5597 8.5431 24 1 6.7710 9.7717 8.0985 25 1 7.8839 8.7067 9.9713 26 1 8.7296 8.3929 7.7203 27 6 5.5627 0.8183 1.6095 28 16 4.5305 0.0638 0.4750 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6608 2.7672 -1.4425 33 1 2.8830 1.0774 -1.9562 34 1 1.2569 1.8014 -1.9564 35 1 3.3650 4.5407 2.3108 36 1 2.9700 3.0208 3.1486 37 1 2.9280 4.5631 4.0361 38 1 4.9576 5.7307 4.4963 39 1 6.5250 4.9315 4.2260 40 1 3.7135 2.9949 6.5789 41 1 3.2802 4.6714 6.0276 42 1 3.9014 5.3225 8.3079 43 1 4.9536 3.8546 8.5112 44 1 5.6173 7.1774 10.1598 45 1 6.5461 0.4724 1.8919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085595451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = 40.398777 kcal Electronic energy + Delta-G solvation = -27263.980955 eV Core-core repulsion = 23411.575863 eV Total energy + Delta-G solvation = -3852.405092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76083 -39.18437 -38.38611 -37.54922 -35.10707 -32.90903 -32.07956 -29.97202 -28.81730 -27.78134 -27.33804 -26.47605 -25.60169 -23.79674 -23.24337 -22.08319 -20.87889 -19.63002 -19.09060 -18.20290 -16.83104 -16.72113 -16.61944 -16.19444 -15.92488 -15.58113 -15.42815 -14.78816 -14.57692 -14.30208 -13.88078 -13.60267 -13.38146 -13.36009 -13.14273 -12.81720 -12.65407 -12.50790 -12.35275 -12.16258 -12.09032 -11.87357 -11.51024 -11.32863 -10.98345 -10.79035 -10.69025 -10.38656 -10.35397 -10.02161 -9.87084 -9.79790 -9.72566 -9.63204 -9.39508 -9.13870 -8.72722 -8.23506 -6.78898 -5.69999 -3.01284 0.30170 0.99872 1.43690 1.81680 2.91019 3.27213 3.40351 3.43683 3.48987 3.51018 3.93471 4.39411 4.53058 4.58333 4.63868 4.84607 4.93633 4.94665 5.08056 5.17505 5.24977 5.25647 5.26048 5.44616 5.50734 5.56737 5.63505 5.67080 5.77288 5.92214 6.04418 6.13874 6.27654 6.34111 6.52884 6.54024 6.72332 6.78532 6.91941 7.18279 7.33304 7.49801 7.64003 7.65418 8.05618 8.33274 9.12516 9.78389 10.69724 11.47863 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002424 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.064609 B =11550.365288 C =11998.443939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.010 3.990 7 N -0.426 5.426 8 C 0.018 3.982 9 C 0.585 3.415 10 O -0.532 6.532 11 N -0.588 5.588 12 C 0.088 3.912 13 C 0.120 3.880 14 C 0.130 3.870 15 H 0.049 0.951 16 C -0.159 4.159 17 C 0.166 3.834 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.231 4.231 28 S 0.243 5.757 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.026 0.974 44 H 0.253 0.747 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 -14.750 -23.731 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.112 0.888 5 C -0.228 4.228 6 C -0.269 4.269 7 N -0.144 5.144 8 C -0.117 4.117 9 C 0.369 3.631 10 O -0.409 6.409 11 N -0.319 5.319 12 C -0.055 4.055 13 C -0.004 4.004 14 C 0.022 3.978 15 H 0.067 0.933 16 C -0.197 4.197 17 C 0.040 3.960 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.373 4.373 28 S 0.500 5.500 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.063 0.937 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.578 -15.146 -23.811 30.502 hybrid contribution 0.902 1.615 1.025 2.115 sum -10.676 -13.531 -22.785 28.570 Atomic orbital electron populations 1.22858 0.79736 1.03330 1.00513 1.87901 1.20683 1.26403 1.95114 1.20275 0.88355 0.86087 0.94947 0.88790 1.22298 1.03321 1.02532 0.94630 1.26873 1.02142 0.97081 1.00759 1.67274 1.12704 1.26545 1.07860 1.20476 0.91109 0.97847 1.02299 1.17104 0.85214 0.80326 0.80420 1.90833 1.17701 1.71392 1.60999 1.47642 1.12018 1.27033 1.45206 1.22062 0.80477 1.03197 0.99769 1.21826 0.98357 0.90937 0.89235 1.22565 0.94169 0.92231 0.88861 0.93312 1.23763 0.96515 0.98811 1.00603 1.22089 0.89222 0.93568 0.91082 1.46124 1.43820 1.25376 1.17621 1.19029 1.16881 1.00373 0.98470 0.90334 1.24790 1.00134 0.99775 0.95796 1.69835 1.41207 1.41101 1.04770 0.86162 0.80214 0.82687 0.76984 1.21617 1.21711 1.20681 1.26752 1.07167 1.00075 1.03286 1.82866 1.05481 1.26322 1.35308 0.93397 0.93569 0.89089 0.90623 0.91308 0.91011 0.92864 0.89700 0.91393 0.89589 0.90824 0.93457 0.90983 0.91566 0.95595 0.93747 0.79256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.89 10.17 -35.23 -0.36 -3.25 16 3 C 0.16 1.21 3.23 -27.89 -0.09 1.12 16 4 H 0.09 0.63 7.79 -51.92 -0.40 0.23 16 5 C -0.17 -0.95 9.51 37.16 0.35 -0.59 16 6 C 0.01 0.10 6.30 -13.62 -0.09 0.01 16 7 N -0.43 -5.18 6.92 -8.51 -0.06 -5.24 16 8 C 0.02 0.25 6.45 -84.52 -0.54 -0.29 16 9 C 0.59 10.16 7.60 -12.59 -0.10 10.06 16 10 O -0.53 -10.93 16.45 5.25 0.09 -10.84 16 11 N -0.59 -9.79 2.75 -182.90 -0.50 -10.29 16 12 C 0.09 1.17 8.87 59.85 0.53 1.70 16 13 C 0.12 2.32 5.23 -4.04 -0.02 2.30 16 14 C 0.13 2.87 4.56 -66.74 -0.30 2.57 16 15 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.16 -3.17 7.27 -25.80 -0.19 -3.36 16 17 C 0.17 4.10 7.38 -2.98 -0.02 4.08 16 18 N -0.60 -16.03 3.58 -169.76 -0.61 -16.64 16 19 C -0.22 -6.33 10.52 -15.06 -0.16 -6.48 16 20 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.10 11.53 55.49 0.64 -27.46 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.23 -2.69 10.62 29.65 0.31 -2.38 16 28 S 0.24 2.13 22.73 -107.50 -2.44 -0.31 16 29 H 0.05 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.05 0.15 7.87 -51.93 -0.41 -0.26 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.29 7.87 -51.93 -0.41 -0.12 16 35 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.08 1.09 5.80 -51.93 -0.30 0.79 16 37 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 38 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 39 H 0.07 1.54 7.67 -51.93 -0.40 1.14 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.34 6.77 -51.93 -0.35 0.99 16 42 H 0.07 1.76 7.42 -51.93 -0.39 1.37 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.19 2.06 8.03 -52.49 -0.42 1.64 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -34.72 383.81 -8.56 -43.28 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.76 Total: -2.38 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 0.69 Total: 9.62 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.53 Total: -59.63 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.27 Total: -14.09 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.44 Total: -0.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.72 -8.56 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.678 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds