Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00533 * 2 1 4 4 H 1.09009 * 109.46480 * 29.99536 * 3 2 1 5 5 C 1.52998 * 109.47139 * 269.99959 * 3 2 1 6 6 C 1.50697 * 109.47367 * 149.99194 * 3 2 1 7 7 N 1.28642 * 124.72157 * 224.99835 * 6 3 2 8 8 C 1.33564 * 115.76713 * 180.02562 * 7 6 3 9 9 C 1.47273 * 123.14276 * 179.97438 * 8 7 6 10 10 O 1.21628 * 120.00021 * 184.83673 * 9 8 7 11 11 N 1.34774 * 119.99800 * 4.83918 * 9 8 7 12 12 C 1.46501 * 120.00208 * 5.12388 * 11 9 8 13 13 C 1.46499 * 119.99836 * 185.12967 * 11 9 8 14 14 C 1.53003 * 109.46977 * 275.53547 * 13 11 9 15 15 H 1.09004 * 113.03659 * 68.72268 * 14 13 11 16 16 C 1.53946 * 113.77265 * 296.97467 * 14 13 11 17 17 C 1.53942 * 86.29002 * 222.08889 * 16 14 13 18 18 N 1.47578 * 86.24013 * 23.54917 * 17 16 14 19 19 C 1.36943 * 134.48990 * 155.42567 * 18 17 16 20 20 H 1.08007 * 119.99407 * 185.51025 * 19 18 17 21 21 C 1.38807 * 120.00098 * 5.50783 * 19 18 17 22 22 N 1.31614 * 120.00076 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47259 * 89.99975 * 23 21 19 25 25 H 1.48497 * 109.47031 * 210.00239 * 23 21 19 26 26 H 1.48503 * 109.46986 * 330.00197 * 23 21 19 27 27 C 1.35205 * 113.71860 * 0.24893 * 8 7 6 28 28 S 1.70770 * 124.72049 * 45.00894 * 6 3 2 29 29 H 1.08999 * 109.47775 * 300.00414 * 1 2 3 30 30 H 1.09006 * 109.46875 * 60.00513 * 1 2 3 31 31 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47027 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.46901 * 299.99176 * 5 3 2 34 34 H 1.09004 * 109.47181 * 59.99648 * 5 3 2 35 35 H 1.09003 * 109.47400 * 275.73253 * 12 11 9 36 36 H 1.08994 * 109.47072 * 35.73124 * 12 11 9 37 37 H 1.08997 * 109.46985 * 155.73302 * 12 11 9 38 38 H 1.09003 * 109.47274 * 155.54363 * 13 11 9 39 39 H 1.09004 * 109.47150 * 35.53660 * 13 11 9 40 40 H 1.09000 * 113.74156 * 107.73881 * 16 14 13 41 41 H 1.09003 * 113.83740 * 336.45034 * 16 14 13 42 42 H 1.08998 * 113.76991 * 137.90401 * 17 16 14 43 43 H 1.08997 * 113.77272 * 269.19154 * 17 16 14 44 44 H 0.97007 * 120.00267 * 179.97438 * 22 21 19 45 45 H 1.07998 * 125.58870 * 179.75509 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3385 1.2638 0.7106 7 7 3.7324 2.1274 1.5788 8 6 4.9451 1.9175 2.0977 9 6 5.5552 2.8041 3.1031 10 8 6.6975 2.6093 3.4725 11 7 4.8476 3.8313 3.6137 12 6 3.4374 3.9997 3.2543 13 6 5.4888 4.7794 4.5281 14 6 5.4494 4.2208 5.9520 15 1 6.0892 3.3485 6.0858 16 6 4.0254 4.0369 6.5073 17 6 4.5730 4.6121 7.8260 18 7 5.6190 5.2477 7.0015 19 6 6.4221 6.3469 7.1499 20 1 7.0651 6.6592 6.3402 21 6 6.4097 7.0598 8.3409 22 7 5.6257 6.6795 9.3273 23 14 7.5046 8.5597 8.5431 24 1 6.7710 9.7717 8.0985 25 1 7.8839 8.7067 9.9713 26 1 8.7296 8.3929 7.7203 27 6 5.5627 0.8183 1.6095 28 16 4.5305 0.0638 0.4750 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6608 2.7672 -1.4425 33 1 2.8830 1.0774 -1.9562 34 1 1.2569 1.8014 -1.9564 35 1 3.3650 4.5407 2.3108 36 1 2.9700 3.0208 3.1486 37 1 2.9280 4.5631 4.0361 38 1 4.9576 5.7307 4.4963 39 1 6.5250 4.9315 4.2260 40 1 3.7135 2.9949 6.5789 41 1 3.2802 4.6714 6.0276 42 1 3.9014 5.3225 8.3079 43 1 4.9536 3.8546 8.5112 44 1 5.6173 7.1774 10.1598 45 1 6.5461 0.4724 1.8919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085595451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = 17.357118 kcal Electronic energy + Delta-G solvation = -27264.980116 eV Core-core repulsion = 23411.575863 eV Total energy + Delta-G solvation = -3853.404253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82551 -40.33875 -39.45270 -38.85152 -36.53478 -34.24470 -33.52279 -30.79359 -30.26998 -29.86875 -27.73028 -27.61783 -26.58758 -25.33553 -24.84685 -23.39371 -21.76605 -21.01628 -20.54167 -19.40255 -18.57785 -17.70823 -17.35148 -17.23010 -17.13572 -16.82696 -16.49938 -16.30317 -15.94670 -15.63391 -15.21420 -14.86224 -14.66638 -14.17964 -14.01136 -13.98796 -13.86093 -13.61472 -13.50482 -13.31287 -13.19551 -12.94161 -12.83693 -12.62122 -12.59104 -12.39483 -12.26170 -11.97487 -11.84718 -11.60811 -11.36864 -11.21760 -10.87617 -10.83540 -10.67948 -10.54875 -10.01210 -9.64909 -8.91997 -7.91713 -5.25022 -0.56212 0.21626 0.60658 0.81156 1.43464 1.46181 1.54618 1.91798 2.20635 2.36061 2.48681 3.21928 3.28813 3.42423 3.59237 3.82551 3.97288 4.09472 4.11704 4.16921 4.25937 4.27146 4.39892 4.47467 4.55875 4.62171 4.64599 4.66216 4.77594 4.85338 4.89710 4.91000 4.95877 4.96861 5.00886 5.12546 5.21136 5.25431 5.45795 5.53852 5.67672 5.92134 6.08202 6.25078 6.41591 6.91639 7.02173 7.59505 8.56364 9.26079 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002424 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.064609 B =11550.365288 C =11998.443939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.164 3.836 4 H 0.101 0.899 5 C -0.166 4.166 6 C 0.003 3.997 7 N -0.438 5.438 8 C -0.006 4.006 9 C 0.580 3.420 10 O -0.577 6.577 11 N -0.587 5.587 12 C 0.091 3.909 13 C 0.136 3.864 14 C 0.130 3.870 15 H 0.026 0.974 16 C -0.124 4.124 17 C 0.159 3.841 18 N -0.628 5.628 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.067 4.067 22 N -0.954 5.954 23 Si 0.978 3.022 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.273 1.273 27 C -0.241 4.241 28 S 0.317 5.683 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.009 0.991 44 H 0.249 0.751 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.816 -15.437 -26.366 33.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.103 3.897 4 H 0.119 0.881 5 C -0.225 4.225 6 C -0.276 4.276 7 N -0.156 5.156 8 C -0.142 4.142 9 C 0.367 3.633 10 O -0.457 6.457 11 N -0.317 5.317 12 C -0.051 4.051 13 C 0.012 3.988 14 C 0.023 3.977 15 H 0.044 0.956 16 C -0.161 4.161 17 C 0.034 3.966 18 N -0.355 5.355 19 C -0.360 4.360 20 H 0.098 0.902 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.806 3.194 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.198 1.198 27 C -0.384 4.384 28 S 0.575 5.425 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.058 0.942 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.303 -15.857 -26.501 33.626 hybrid contribution 1.381 1.671 1.741 2.780 sum -11.922 -14.186 -24.760 30.926 Atomic orbital electron populations 1.23045 0.78266 1.04309 1.01385 1.87863 1.22283 1.26384 1.95252 1.20402 0.87214 0.86418 0.95660 0.88123 1.22292 1.04410 1.02250 0.93511 1.27416 1.03385 0.96838 0.99956 1.67201 1.11957 1.27593 1.08817 1.20049 0.92571 0.98436 1.03118 1.17609 0.84769 0.80396 0.80573 1.90796 1.19633 1.72631 1.62657 1.47678 1.13268 1.26381 1.44421 1.22211 0.78298 1.04045 1.00549 1.21404 0.97705 0.91614 0.88081 1.22605 0.95034 0.90399 0.89677 0.95631 1.23518 0.95511 1.00427 0.96692 1.22055 0.88985 0.92861 0.92709 1.46511 1.43890 1.25735 1.19330 1.19387 1.16833 1.01175 0.98621 0.90174 1.25642 1.01770 1.02956 0.95591 1.70016 1.42783 1.42459 1.05063 0.85092 0.78580 0.79219 0.76529 1.20661 1.22074 1.19796 1.26973 1.07810 0.99850 1.03789 1.82643 1.03120 1.24132 1.32559 0.93258 0.91979 0.88140 0.90859 0.91255 0.89186 0.91495 0.88835 0.90788 0.89041 0.92975 0.90855 0.88820 0.93788 0.97310 0.94218 0.79206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 113.37 1.23 1.39 16 2 O -0.40 -4.86 10.17 -148.98 -1.51 -6.37 16 3 C 0.16 1.96 3.23 29.85 0.10 2.05 16 4 H 0.10 1.07 7.79 -2.38 -0.02 1.05 16 5 C -0.17 -1.36 9.51 71.98 0.68 -0.68 16 6 C 0.00 0.05 6.30 88.57 0.56 0.60 16 7 N -0.44 -9.87 6.92 -180.83 -1.25 -11.12 16 8 C -0.01 -0.18 6.45 40.56 0.26 0.09 16 9 C 0.58 20.29 7.60 86.62 0.66 20.94 16 10 O -0.58 -24.54 16.45 -4.12 -0.07 -24.61 16 11 N -0.59 -19.28 2.75 -850.83 -2.34 -21.61 16 12 C 0.09 2.24 8.87 127.77 1.13 3.37 16 13 C 0.14 5.33 5.23 86.38 0.45 5.78 16 14 C 0.13 5.83 4.56 45.05 0.21 6.04 16 15 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 16 C -0.12 -4.83 7.27 31.25 0.23 -4.60 16 17 C 0.16 8.05 7.38 86.48 0.64 8.69 16 18 N -0.63 -34.12 3.58 -690.99 -2.48 -36.59 16 19 C -0.23 -13.59 10.52 84.03 0.88 -12.71 16 20 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 22 N -0.95 -59.57 11.53 21.65 0.25 -59.32 16 23 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 C -0.24 -5.40 10.62 67.12 0.71 -4.69 16 28 S 0.32 4.79 22.73 -56.49 -1.28 3.51 16 29 H 0.05 0.31 8.08 -2.39 -0.02 0.29 16 30 H 0.06 0.20 7.87 -2.38 -0.02 0.19 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 0.42 7.87 -2.38 -0.02 0.40 16 35 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.09 2.20 5.80 -2.39 -0.01 2.19 16 37 H 0.07 1.73 6.55 -2.39 -0.02 1.71 16 38 H 0.09 3.47 8.03 -2.39 -0.02 3.45 16 39 H 0.05 2.25 7.67 -2.39 -0.02 2.23 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.09 3.28 6.77 -2.39 -0.02 3.27 16 42 H 0.04 2.40 7.42 -2.39 -0.02 2.38 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.25 15.03 8.31 -92.70 -0.77 14.25 16 45 H 0.19 4.10 8.03 -2.91 -0.02 4.08 16 Total: -1.00 -77.11 383.81 2.54 -74.57 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.99 Total: 9.28 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 8.20 Total: 22.80 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.81 Total: -128.64 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.58 Total: -30.98 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.28 Total: 3.51 kcal Total: -77.11 2.54 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.928 kcal (2) G-P(sol) polarization free energy of solvation -77.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds