Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99620 * 2 1 4 4 H 1.08998 * 109.47401 * 329.99715 * 3 2 1 5 5 C 1.53000 * 109.47152 * 90.00236 * 3 2 1 6 6 C 1.50702 * 109.46848 * 210.00109 * 3 2 1 7 7 N 1.28655 * 124.71683 * 134.99857 * 6 3 2 8 8 C 1.33561 * 115.76300 * 180.02562 * 7 6 3 9 9 C 1.47270 * 123.13861 * 180.02562 * 8 7 6 10 10 O 1.21638 * 119.99649 * 186.81997 * 9 8 7 11 11 N 1.34772 * 120.00045 * 6.81791 * 9 8 7 12 12 C 1.46497 * 119.99935 * 356.45569 * 11 9 8 13 13 C 1.46502 * 119.99799 * 176.45799 * 11 9 8 14 14 C 1.52992 * 109.47305 * 95.67329 * 13 11 9 15 15 H 1.09005 * 113.04308 * 65.68292 * 14 13 11 16 16 C 1.53946 * 113.77007 * 293.92923 * 14 13 11 17 17 C 1.53948 * 86.29183 * 222.09309 * 16 14 13 18 18 N 1.47587 * 86.24033 * 23.54868 * 17 16 14 19 19 C 1.36932 * 134.49344 * 155.42634 * 18 17 16 20 20 H 1.07998 * 120.00115 * 185.20925 * 19 18 17 21 21 C 1.38813 * 119.99958 * 5.20927 * 19 18 17 22 22 N 1.31621 * 120.00167 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00007 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47526 * 89.99698 * 23 21 19 25 25 H 1.48504 * 109.46687 * 209.99604 * 23 21 19 26 26 H 1.48500 * 109.47081 * 329.99207 * 23 21 19 27 27 C 1.35204 * 113.72104 * 0.27347 * 8 7 6 28 28 S 1.70765 * 124.72250 * 315.04362 * 6 3 2 29 29 H 1.09004 * 109.46924 * 299.99810 * 1 2 3 30 30 H 1.08997 * 109.47439 * 59.99782 * 1 2 3 31 31 H 1.09002 * 109.46605 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46737 * 299.99820 * 5 3 2 33 33 H 1.09005 * 109.46630 * 59.99829 * 5 3 2 34 34 H 1.09000 * 109.46742 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47345 * 275.90578 * 12 11 9 36 36 H 1.08995 * 109.47608 * 35.90868 * 12 11 9 37 37 H 1.08999 * 109.47031 * 155.91360 * 12 11 9 38 38 H 1.09000 * 109.47017 * 335.66820 * 13 11 9 39 39 H 1.09004 * 109.46947 * 215.67219 * 13 11 9 40 40 H 1.09001 * 113.74397 * 107.74757 * 16 14 13 41 41 H 1.08997 * 113.83699 * 336.44869 * 16 14 13 42 42 H 1.08999 * 113.77094 * 137.90274 * 17 16 14 43 43 H 1.08999 * 113.77003 * 269.19244 * 17 16 14 44 44 H 0.96997 * 119.99963 * 179.97438 * 22 21 19 45 45 H 1.07995 * 125.59041 * 179.73755 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7105 7 7 3.7324 2.1277 -1.5789 8 6 4.9447 1.9173 -2.0984 9 6 5.5546 2.8037 -3.1039 10 8 6.6064 2.4934 -3.6302 11 7 4.9473 3.9587 -3.4410 12 6 3.6429 4.2956 -2.8654 13 6 5.5916 4.8772 -4.3830 14 6 5.0521 4.6240 -5.7921 15 1 3.9944 4.8671 -5.8941 16 6 5.4296 3.2449 -6.3625 17 6 5.7023 3.9788 -7.6880 18 7 5.8968 5.1888 -6.8656 19 6 6.5842 6.3614 -7.0313 20 1 6.6367 7.0755 -6.2227 21 6 7.2136 6.6324 -8.2385 22 7 7.1501 5.7620 -9.2237 23 14 8.1519 8.2318 -8.4643 24 1 9.5662 8.0381 -8.0550 25 1 8.1009 8.6382 -9.8917 26 1 7.5345 9.2905 -7.6258 27 6 5.5574 0.8115 -1.6190 28 16 4.5300 0.0634 -0.4757 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.2569 1.8014 1.9563 33 1 2.8830 1.0775 1.9562 34 1 2.6613 2.7670 1.4424 35 1 2.8547 3.8167 -3.4465 36 1 3.5989 3.9442 -1.8346 37 1 3.5045 5.3765 -2.8871 38 1 6.6691 4.7128 -4.3714 39 1 5.3778 5.9056 -4.0915 40 1 4.5941 2.5465 -6.4114 41 1 6.3210 2.8101 -5.9103 42 1 6.6058 3.6442 -8.1977 43 1 4.8362 4.0307 -8.3477 44 1 7.5896 5.9515 -10.0674 45 1 6.5365 0.4598 -1.9091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085595452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = 43.117800 kcal Electronic energy + Delta-G solvation = -27343.640493 eV Core-core repulsion = 23491.353307 eV Total energy + Delta-G solvation = -3852.287186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76869 -39.18120 -38.37859 -37.40662 -35.13874 -32.91134 -32.05824 -29.96437 -28.76695 -27.71748 -27.34157 -26.45194 -25.65645 -23.80721 -23.15105 -22.05749 -20.88477 -19.62929 -18.87281 -18.28223 -16.85547 -16.73295 -16.65723 -16.09671 -15.92840 -15.60121 -15.48302 -14.75445 -14.38825 -14.31371 -13.86628 -13.63734 -13.39404 -13.34172 -13.14396 -12.82315 -12.73054 -12.55754 -12.26572 -12.15769 -12.05242 -11.79114 -11.47007 -11.30001 -10.94421 -10.77981 -10.63123 -10.38397 -10.33205 -9.95352 -9.87014 -9.77372 -9.63836 -9.54195 -9.35848 -9.12482 -8.69807 -8.19859 -6.75570 -5.66890 -2.98286 0.30949 1.00382 1.44159 1.82478 2.90020 3.29690 3.44005 3.45390 3.49334 3.51298 3.92199 4.39504 4.54405 4.58079 4.63656 4.83999 4.93421 4.94708 5.08523 5.16819 5.24515 5.25491 5.28292 5.47208 5.51807 5.53885 5.62311 5.70415 5.82769 5.98875 6.07900 6.18937 6.22467 6.47727 6.53483 6.67450 6.83113 6.86972 6.92500 7.17783 7.38227 7.57902 7.68495 7.71088 8.08724 8.38147 9.14466 9.80862 10.73219 11.50893 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.002411 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.939517 B =11611.096656 C =11802.682760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.170 4.170 6 C 0.009 3.991 7 N -0.427 5.427 8 C 0.019 3.981 9 C 0.586 3.414 10 O -0.525 6.525 11 N -0.590 5.590 12 C 0.076 3.924 13 C 0.116 3.884 14 C 0.129 3.871 15 H 0.042 0.958 16 C -0.158 4.158 17 C 0.165 3.835 18 N -0.601 5.601 19 C -0.220 4.220 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.230 4.230 28 S 0.245 5.755 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.252 0.748 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.895 -12.863 24.523 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.103 3.897 4 H 0.112 0.888 5 C -0.228 4.228 6 C -0.270 4.270 7 N -0.145 5.145 8 C -0.116 4.116 9 C 0.371 3.629 10 O -0.401 6.401 11 N -0.321 5.321 12 C -0.068 4.068 13 C -0.007 4.007 14 C 0.021 3.979 15 H 0.059 0.941 16 C -0.197 4.197 17 C 0.040 3.960 18 N -0.327 5.327 19 C -0.348 4.348 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.372 4.372 28 S 0.502 5.498 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.320 -13.363 24.518 30.938 hybrid contribution 0.452 1.871 -1.095 2.214 sum -12.868 -11.492 23.424 29.091 Atomic orbital electron populations 1.22859 0.79745 1.03339 1.00491 1.87908 1.20675 1.26357 1.95107 1.20276 0.88368 0.86136 0.94912 0.88806 1.22304 1.03339 1.02516 0.94664 1.26916 1.01934 0.96964 1.01156 1.67254 1.12988 1.25792 1.08416 1.20510 0.91207 0.97688 1.02233 1.17045 0.84123 0.80796 0.80976 1.90841 1.22589 1.72969 1.53693 1.47611 1.20776 1.19682 1.44074 1.22251 0.83556 1.00163 1.00801 1.21894 0.99119 0.91132 0.88569 1.22546 0.94017 0.92537 0.88821 0.94107 1.23821 1.00480 0.95259 1.00109 1.22103 0.98611 0.83978 0.91337 1.46015 1.54016 1.17069 1.15631 1.18985 1.24163 0.94055 0.97599 0.90417 1.24794 1.01437 0.98465 0.95825 1.69845 1.47788 1.35106 1.04019 0.86160 0.79866 0.83024 0.76956 1.21585 1.21734 1.20760 1.26750 1.07372 0.99824 1.03288 1.82865 1.05786 1.26507 1.34657 0.93562 0.93423 0.89080 0.91002 0.91288 0.90633 0.92957 0.88258 0.92095 0.88926 0.91261 0.94107 0.89481 0.91613 0.95764 0.93747 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.90 10.17 -35.23 -0.36 -3.26 16 3 C 0.16 1.20 3.23 -27.88 -0.09 1.11 16 4 H 0.09 0.63 7.79 -51.93 -0.40 0.22 16 5 C -0.17 -0.91 9.51 37.16 0.35 -0.56 16 6 C 0.01 0.08 6.30 -13.61 -0.09 0.00 16 7 N -0.43 -5.16 6.74 -8.51 -0.06 -5.22 16 8 C 0.02 0.26 6.50 -84.52 -0.55 -0.29 16 9 C 0.59 10.18 7.29 -12.59 -0.09 10.09 16 10 O -0.52 -10.76 14.51 5.24 0.08 -10.69 16 11 N -0.59 -9.82 2.80 -182.91 -0.51 -10.33 16 12 C 0.08 0.99 9.54 59.85 0.57 1.56 16 13 C 0.12 2.26 5.42 -4.04 -0.02 2.24 16 14 C 0.13 2.84 4.58 -66.74 -0.31 2.54 16 15 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.16 -3.52 7.25 -25.79 -0.19 -3.71 16 17 C 0.16 4.28 7.38 -2.97 -0.02 4.25 16 18 N -0.60 -16.28 3.58 -169.71 -0.61 -16.89 16 19 C -0.22 -6.38 10.52 -15.06 -0.16 -6.54 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.92 -28.56 11.52 55.49 0.64 -27.92 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C -0.23 -2.69 10.62 29.65 0.31 -2.38 16 28 S 0.24 2.15 22.73 -107.50 -2.44 -0.30 16 29 H 0.05 0.15 7.87 -51.93 -0.41 -0.26 16 30 H 0.05 0.21 8.08 -51.93 -0.42 -0.21 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.28 7.87 -51.93 -0.41 -0.13 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.20 5.21 -51.93 -0.27 0.93 16 37 H 0.06 0.72 7.89 -51.93 -0.41 0.31 16 38 H 0.09 2.05 7.31 -51.93 -0.38 1.67 16 39 H 0.07 1.26 7.95 -51.93 -0.41 0.85 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.05 6.49 -51.93 -0.34 1.72 16 42 H 0.07 1.86 7.40 -51.93 -0.38 1.47 16 43 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.19 2.08 8.04 -52.49 -0.42 1.66 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -35.10 382.41 -8.56 -43.66 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.76 Total: -1.89 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 0.73 Total: 9.19 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.54 Total: -60.36 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.28 Total: -13.94 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.44 Total: -0.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.10 -8.56 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.782 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds